RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 NPHP1O15259 732 aa24.98■■□□□ 1.59
CLN3-225ENST00000566824 TGFB2P61812 414 aa24.98■■□□□ 1.59
CLN3-225ENST00000566824 UTP14AQ9BVJ6 771 aaKnown RBP24.98■■□□□ 1.59
CLN3-225ENST00000566824 BRIP1Q9BX63 1249 aa24.98■■□□□ 1.59
CLN3-225ENST00000566824 SMC4Q9NTJ3 1288 aa24.98■■□□□ 1.59
CLN3-225ENST00000566824 IBTKQ9P2D0 1353 aaPredicted RBP24.98■■□□□ 1.59
CLN3-225ENST00000566824 ST5P78524 1137 aa24.97■■□□□ 1.59
CLN3-225ENST00000566824 TRIM28Q13263 835 aaKnown RBP24.97■■□□□ 1.59
CLN3-225ENST00000566824 C3orf67Q6ZVT6 689 aa24.97■■□□□ 1.59
CLN3-225ENST00000566824 LAMB2P55268 1798 aa24.97■■□□□ 1.59
CLN3-225ENST00000566824 DDX60Q8IY21 1712 aaKnown RBP24.96■■□□□ 1.59
CLN3-225ENST00000566824 CWF19L2Q2TBE0 894 aaKnown RBP24.96■■□□□ 1.59
CLN3-225ENST00000566824 PPP1R42Q7Z4L9 355 aa24.96■■□□□ 1.59
CLN3-225ENST00000566824 DNAAF4Q8WXU2 420 aa24.96■■□□□ 1.59
CLN3-225ENST00000566824 JARID2Q92833 1246 aaPredicted RBP24.96■■□□□ 1.59
CLN3-225ENST00000566824 NYXQ9GZU5 481 aa24.96■■□□□ 1.59
CLN3-225ENST00000566824 GTF2E1P29083 439 aaPredicted RBP24.95■■□□□ 1.58
CLN3-225ENST00000566824 C2CD5Q86YS7 1000 aa24.95■■□□□ 1.58
CLN3-225ENST00000566824 TRMT112Q9UI30 125 aaKnown RBP24.95■■□□□ 1.58
CLN3-225ENST00000566824 BCAR3O75815 825 aa24.94■■□□□ 1.58
CLN3-225ENST00000566824 YBX3P16989 372 aaKnown RBP eCLIP24.94■■□□□ 1.58
CLN3-225ENST00000566824 RTL5Q5HYW3 569 aaPredicted RBP24.94■■□□□ 1.58
CLN3-225ENST00000566824 FAM89AQ96GI7 184 aa24.94■■□□□ 1.58
CLN3-225ENST00000566824 CACNA1SQ13698 1873 aa24.94■■□□□ 1.58
CLN3-225ENST00000566824 NEURL1BA8MQ27 555 aa24.92■■□□□ 1.58
CLN3-225ENST00000566824 HCLS1P14317 486 aaPredicted RBP24.92■■□□□ 1.58
CLN3-225ENST00000566824 PELP1Q8IZL8 1130 aaKnown RBP24.92■■□□□ 1.58
CLN3-225ENST00000566824 NOB1Q9ULX3 412 aaKnown RBP24.92■■□□□ 1.58
CLN3-225ENST00000566824 KLRG2A4D1S0 409 aaPredicted RBP24.91■■□□□ 1.58
CLN3-225ENST00000566824 PDE6BP35913 854 aa24.91■■□□□ 1.58
CLN3-225ENST00000566824 BEND3Q5T5X7 828 aa24.91■■□□□ 1.58
CLN3-225ENST00000566824 CCDC191Q8NCU4 936 aa24.91■■□□□ 1.58
CLN3-225ENST00000566824 CWC25Q9NXE8 425 aaPredicted RBP24.91■■□□□ 1.58
CLN3-225ENST00000566824 SH3TC1Q8TE82 1336 aa24.91■■□□□ 1.58
CLN3-225ENST00000566824 GOLGB1Q14789 3259 aaKnown RBP24.9■■□□□ 1.58
CLN3-225ENST00000566824 SLC10A5Q5PT55 438 aa24.9■■□□□ 1.58
CLN3-225ENST00000566824 RIC1Q4ADV7 1423 aa24.9■■□□□ 1.58
CLN3-225ENST00000566824 H0YIN7 160 aa24.89■■□□□ 1.58
CLN3-225ENST00000566824 SRGNP10124 158 aa24.89■■□□□ 1.58
CLN3-225ENST00000566824 BRPF1P55201 1214 aaPredicted RBP24.89■■□□□ 1.58
CLN3-225ENST00000566824 NEXNQ0ZGT2 675 aa24.89■■□□□ 1.58
CLN3-225ENST00000566824 SLX4Q8IY92 1834 aa24.89■■□□□ 1.57
CLN3-225ENST00000566824 TAF1P21675 1872 aa24.88■■□□□ 1.57
CLN3-225ENST00000566824 SLC4A10Q6U841 1118 aa24.88■■□□□ 1.57
CLN3-225ENST00000566824 LINS1Q8NG48 757 aa24.88■■□□□ 1.57
CLN3-225ENST00000566824 TNNQ9UQP3 1299 aa24.88■■□□□ 1.57
CLN3-225ENST00000566824 PTPRCP08575 1304 aa24.88■■□□□ 1.57
CLN3-225ENST00000566824 RNF123Q5XPI4 1314 aa24.88■■□□□ 1.57
CLN3-225ENST00000566824 GPR162Q16538 588 aa24.87■■□□□ 1.57
CLN3-225ENST00000566824 ZBTB38Q8NAP3 1195 aaPredicted RBP24.87■■□□□ 1.57
CLN3-225ENST00000566824 ZNF622Q969S3 477 aaKnown RBP eCLIP24.87■■□□□ 1.57
CLN3-225ENST00000566824 PIM2Q9P1W9 311 aa24.87■■□□□ 1.57
CLN3-225ENST00000566824 ARFGEF1Q9Y6D6 1849 aa24.87■■□□□ 1.57
CLN3-225ENST00000566824 PCCAP05165 728 aaPredicted RBP24.86■■□□□ 1.57
CLN3-225ENST00000566824 GCKRQ14397 625 aa24.86■■□□□ 1.57
CLN3-225ENST00000566824 CRY2Q49AN0 593 aa24.86■■□□□ 1.57
CLN3-225ENST00000566824 BCS1LQ9Y276 419 aa24.86■■□□□ 1.57
CLN3-225ENST00000566824 IRS4O14654 1257 aaPredicted RBP24.85■■□□□ 1.57
CLN3-225ENST00000566824 COL4A1P02462 1669 aa24.85■■□□□ 1.57
CLN3-225ENST00000566824 H7C1W4 665 aa24.84■■□□□ 1.57
CLN3-225ENST00000566824 CASP7P55210 303 aa24.84■■□□□ 1.57
CLN3-225ENST00000566824 STYK1Q6J9G0 422 aa24.84■■□□□ 1.57
CLN3-225ENST00000566824 SLC51AQ86UW1 340 aa24.84■■□□□ 1.57
CLN3-225ENST00000566824 MASTLQ96GX5 879 aa24.84■■□□□ 1.57
CLN3-225ENST00000566824 NPR1P16066 1061 aa24.83■■□□□ 1.56
CLN3-225ENST00000566824 DALRD3Q5D0E6 543 aaKnown RBP24.83■■□□□ 1.56
CLN3-225ENST00000566824 UBE3BQ7Z3V4 1068 aa24.83■■□□□ 1.56
CLN3-225ENST00000566824 FRAT1Q92837 279 aaPredicted RBP24.83■■□□□ 1.56
CLN3-225ENST00000566824 NLRP3Q96P20 1036 aa24.83■■□□□ 1.56
CLN3-225ENST00000566824 TTLL6Q8N841 843 aa24.82■■□□□ 1.56
CLN3-225ENST00000566824 SRCIN1Q9C0H9 1055 aa24.82■■□□□ 1.56
CLN3-225ENST00000566824 PDZRN3Q9UPQ7 1066 aa24.82■■□□□ 1.56
CLN3-225ENST00000566824 MYH3P11055 1940 aa24.81■■□□□ 1.56
CLN3-225ENST00000566824 ZNF219Q9P2Y4 722 aaPredicted RBP24.81■■□□□ 1.56
CLN3-225ENST00000566824 KIF16BQ96L93 1317 aa24.81■■□□□ 1.56
CLN3-225ENST00000566824 ALDH1L1O75891 902 aa24.8■■□□□ 1.56
CLN3-225ENST00000566824 HOXA10P31260 410 aaPredicted RBP24.8■■□□□ 1.56
CLN3-225ENST00000566824 CDHR2Q9BYE9 1310 aa24.8■■□□□ 1.56
CLN3-225ENST00000566824 UTRNP46939 3433 aa24.8■■□□□ 1.56
CLN3-225ENST00000566824 PRPF40BQ6NWY9 871 aaKnown RBP24.79■■□□□ 1.56
CLN3-225ENST00000566824 OLFM4Q6UX06 510 aa24.79■■□□□ 1.56
CLN3-225ENST00000566824 API5Q9BZZ5 524 aaKnown RBP24.79■■□□□ 1.56
CLN3-225ENST00000566824 TRIM27P14373 513 aa24.78■■□□□ 1.56
CLN3-225ENST00000566824 ARHGAP45Q92619 1136 aa24.78■■□□□ 1.56
CLN3-225ENST00000566824 RPGRQ92834 1020 aaKnown RBP24.78■■□□□ 1.56
CLN3-225ENST00000566824 SF3B3Q15393 1217 aaKnown RBP24.77■■□□□ 1.56
CLN3-225ENST00000566824 CNKSR1Q969H4 720 aa24.77■■□□□ 1.56
CLN3-225ENST00000566824 CCDC85AQ96PX6 553 aaPredicted RBP24.77■■□□□ 1.56
CLN3-225ENST00000566824 RCAN3Q9UKA8 241 aa24.77■■□□□ 1.56
CLN3-225ENST00000566824 ABCC4O15439 1325 aa24.76■■□□□ 1.55
CLN3-225ENST00000566824 GRM8O00222 908 aa24.76■■□□□ 1.55
CLN3-225ENST00000566824 C21orf2O43822 256 aa24.76■■□□□ 1.55
CLN3-225ENST00000566824 PDE8AO60658 829 aa24.76■■□□□ 1.55
CLN3-225ENST00000566824 ATF7IPQ6VMQ6 1270 aa24.76■■□□□ 1.55
CLN3-225ENST00000566824 C7orf43Q8WVR3 580 aa24.76■■□□□ 1.55
CLN3-225ENST00000566824 CLUAP1Q96AJ1 413 aa24.76■■□□□ 1.55
CLN3-225ENST00000566824 NBPF7P0C2Y1 421 aaPredicted RBP24.75■■□□□ 1.55
CLN3-225ENST00000566824 EPHA10Q5JZY3 1008 aa24.75■■□□□ 1.55
CLN3-225ENST00000566824 RBM17Q96I25 401 aaKnown RBP24.75■■□□□ 1.55
CLN3-225ENST00000566824 CRAMP1Q96RY5 1269 aa24.75■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms