RNA–Protein interactions for RNA: ENST00000566292.5

USB1-213, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 575 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-213ENST00000566292 HTRA3P83110 453 aa23.93■■□□□ 1.42
USB1-213ENST00000566292 PPP1R42Q7Z4L9 355 aa23.93■■□□□ 1.42
USB1-213ENST00000566292 XAGE3Q8WTP9 111 aa23.93■■□□□ 1.42
USB1-213ENST00000566292 ZNF277Q9NRM2 450 aaPredicted RBP23.93■■□□□ 1.42
USB1-213ENST00000566292 HOXA10P31260 410 aaPredicted RBP23.92■■□□□ 1.42
USB1-213ENST00000566292 AIMP1Q12904 312 aaKnown RBP23.92■■□□□ 1.42
USB1-213ENST00000566292 C3orf67Q6ZVT6 689 aa23.92■■□□□ 1.42
USB1-213ENST00000566292 RTKN2Q8IZC4 609 aa23.92■■□□□ 1.42
USB1-213ENST00000566292 DDX21Q9NR30 783 aaKnown RBP eCLIP23.92■■□□□ 1.42
USB1-213ENST00000566292 RPGRQ92834 1020 aaKnown RBP23.91■■□□□ 1.42
USB1-213ENST00000566292 SCN4AP35499 1836 aa23.9■■□□□ 1.42
USB1-213ENST00000566292 CFAP44Q96MT7 982 aa23.9■■□□□ 1.42
USB1-213ENST00000566292 CHPF2Q9P2E5 772 aa23.9■■□□□ 1.42
USB1-213ENST00000566292 APAF1O14727 1248 aa23.89■■□□□ 1.41
USB1-213ENST00000566292 SLC51AQ86UW1 340 aa23.89■■□□□ 1.41
USB1-213ENST00000566292 SYNE4Q8N205 404 aa23.89■■□□□ 1.41
USB1-213ENST00000566292 UTP14AQ9BVJ6 771 aaKnown RBP23.89■■□□□ 1.41
USB1-213ENST00000566292 HOXB7P09629 217 aa23.88■■□□□ 1.41
USB1-213ENST00000566292 SLC10A5Q5PT55 438 aa23.88■■□□□ 1.41
USB1-213ENST00000566292 HDGFL1Q5TGJ6 251 aa23.88■■□□□ 1.41
USB1-213ENST00000566292 CRAMP1Q96RY5 1269 aa23.88■■□□□ 1.41
USB1-213ENST00000566292 MBIPQ9NS73 344 aa23.88■■□□□ 1.41
USB1-213ENST00000566292 ZNF541Q9H0D2 1346 aa23.87■■□□□ 1.41
USB1-213ENST00000566292 ZNF853P0CG23 659 aa23.87■■□□□ 1.41
USB1-213ENST00000566292 IARSP41252 1262 aaKnown RBP23.87■■□□□ 1.41
USB1-213ENST00000566292 HSP90AB3PQ58FF7 597 aa23.87■■□□□ 1.41
USB1-213ENST00000566292 NLRP10Q86W26 655 aa23.87■■□□□ 1.41
USB1-213ENST00000566292 RBM17Q96I25 401 aaKnown RBP23.87■■□□□ 1.41
USB1-213ENST00000566292 PSMD1Q99460 953 aa23.87■■□□□ 1.41
USB1-213ENST00000566292 COL4A5P29400 1685 aa23.86■■□□□ 1.41
USB1-213ENST00000566292 TCIRG1Q13488 830 aa23.86■■□□□ 1.41
USB1-213ENST00000566292 CC2D2BQ6DHV5 1058 aa23.86■■□□□ 1.41
USB1-213ENST00000566292 NLRP3Q96P20 1036 aa23.86■■□□□ 1.41
USB1-213ENST00000566292 RNF123Q5XPI4 1314 aa23.85■■□□□ 1.41
USB1-213ENST00000566292 DUSP27Q5VZP5 1158 aa23.85■■□□□ 1.41
USB1-213ENST00000566292 L3MBTL3Q96JM7 780 aaPredicted RBP23.85■■□□□ 1.41
USB1-213ENST00000566292 TAF1P21675 1872 aa23.85■■□□□ 1.41
USB1-213ENST00000566292 DDX60Q8IY21 1712 aaKnown RBP23.84■■□□□ 1.41
USB1-213ENST00000566292 PPEF1O14829 653 aaPredicted RBP23.84■■□□□ 1.41
USB1-213ENST00000566292 POTEIP0CG38 1075 aa23.84■■□□□ 1.41
USB1-213ENST00000566292 POTEJP0CG39 1038 aa23.84■■□□□ 1.41
USB1-213ENST00000566292 CCDC184Q52MB2 194 aa23.84■■□□□ 1.41
USB1-213ENST00000566292 FZD9O00144 591 aa23.83■■□□□ 1.41
USB1-213ENST00000566292 TCERG1O14776 1098 aaKnown RBP23.83■■□□□ 1.41
USB1-213ENST00000566292 KLRG1Q96E93 195 aa23.83■■□□□ 1.41
USB1-213ENST00000566292 DBF4Q9UBU7 674 aaPredicted RBP23.83■■□□□ 1.41
USB1-213ENST00000566292 HCLS1P14317 486 aaPredicted RBP23.82■■□□□ 1.4
USB1-213ENST00000566292 PLBD2Q8NHP8 589 aa23.82■■□□□ 1.4
USB1-213ENST00000566292 IFT57Q9NWB7 429 aa23.82■■□□□ 1.4
USB1-213ENST00000566292 ABCC4O15439 1325 aa23.82■■□□□ 1.4
USB1-213ENST00000566292 ANKRD13DQ6ZTN6 518 aa23.81■■□□□ 1.4
USB1-213ENST00000566292 ZNF428Q96B54 188 aa23.81■■□□□ 1.4
USB1-213ENST00000566292 TRMT112Q9UI30 125 aaKnown RBP23.81■■□□□ 1.4
USB1-213ENST00000566292 IQCA1LA6NCM1 817 aa23.8■■□□□ 1.4
USB1-213ENST00000566292 GNAI1P63096 354 aa23.8■■□□□ 1.4
USB1-213ENST00000566292 GRIPAP1Q4V328 841 aa23.8■■□□□ 1.4
USB1-213ENST00000566292 CHADLQ6NUI6 762 aa23.8■■□□□ 1.4
USB1-213ENST00000566292 TAF1DQ9H5J8 278 aaPredicted RBP23.8■■□□□ 1.4
USB1-213ENST00000566292 HYPKQ9NX55 129 aa23.8■■□□□ 1.4
USB1-213ENST00000566292 SH3TC1Q8TE82 1336 aa23.8■■□□□ 1.4
USB1-213ENST00000566292 ADAMTSL1Q8N6G6 1762 aa23.79■■□□□ 1.4
USB1-213ENST00000566292 JDP2Q8WYK2 163 aa23.79■■□□□ 1.4
USB1-213ENST00000566292 ISCA1Q9BUE6 129 aa23.79■■□□□ 1.4
USB1-213ENST00000566292 CALD1Q05682 793 aaKnown RBP23.78■■□□□ 1.4
USB1-213ENST00000566292 JMYQ8N9B5 988 aa23.78■■□□□ 1.4
USB1-213ENST00000566292 ATP6V0A2Q9Y487 856 aa23.78■■□□□ 1.4
USB1-213ENST00000566292 ELL2O00472 640 aaPredicted RBP23.77■■□□□ 1.4
USB1-213ENST00000566292 LTBP1Q14766 1721 aa23.76■■□□□ 1.39
USB1-213ENST00000566292 ATP5J2-PTCD1G3V325 749 aa23.76■■□□□ 1.39
USB1-213ENST00000566292 ZEB1P37275 1124 aaPredicted RBP23.76■■□□□ 1.39
USB1-213ENST00000566292 GPC2Q8N158 579 aa23.76■■□□□ 1.39
USB1-213ENST00000566292 LARGE2Q8N3Y3 721 aa23.76■■□□□ 1.39
USB1-213ENST00000566292 HACL1Q9UJ83 578 aa23.76■■□□□ 1.39
USB1-213ENST00000566292 LDHDQ86WU2 507 aa23.75■■□□□ 1.39
USB1-213ENST00000566292 C8orf58Q8NAV2 365 aa23.75■■□□□ 1.39
USB1-213ENST00000566292 PHAXQ9H814 394 aaKnown RBP23.75■■□□□ 1.39
USB1-213ENST00000566292 LRRC37AA6NMS7 1700 aa23.75■■□□□ 1.39
USB1-213ENST00000566292 BBOX1O75936 387 aa23.74■■□□□ 1.39
USB1-213ENST00000566292 DDX46Q7L014 1031 aaKnown RBP23.74■■□□□ 1.39
USB1-213ENST00000566292 FAM89AQ96GI7 184 aa23.74■■□□□ 1.39
USB1-213ENST00000566292 EPHX2P34913 555 aa23.73■■□□□ 1.39
USB1-213ENST00000566292 EIF6P56537 245 aaKnown RBP23.73■■□□□ 1.39
USB1-213ENST00000566292 GRAPQ13588 217 aa23.73■■□□□ 1.39
USB1-213ENST00000566292 EAPPQ56P03 285 aaPredicted RBP23.73■■□□□ 1.39
USB1-213ENST00000566292 SP8Q8IXZ3 490 aa23.73■■□□□ 1.39
USB1-213ENST00000566292 GRAPLQ8TC17 118 aaPredicted RBP23.73■■□□□ 1.39
USB1-213ENST00000566292 TMX4Q9H1E5 349 aaPredicted RBP23.73■■□□□ 1.39
USB1-213ENST00000566292 COL4A1P02462 1669 aa23.73■■□□□ 1.39
USB1-213ENST00000566292 TRIM28Q13263 835 aaKnown RBP23.72■■□□□ 1.39
USB1-213ENST00000566292 AOC3Q16853 763 aa23.72■■□□□ 1.39
USB1-213ENST00000566292 RTFDC1Q9BY42 306 aaPredicted RBP23.72■■□□□ 1.39
USB1-213ENST00000566292 GJA3Q9Y6H8 435 aa23.72■■□□□ 1.39
USB1-213ENST00000566292 PCNTO95613 3336 aa23.71■■□□□ 1.39
USB1-213ENST00000566292 PASKQ96RG2 1323 aa23.71■■□□□ 1.39
USB1-213ENST00000566292 PPIP5K2O43314 1243 aa23.71■■□□□ 1.39
USB1-213ENST00000566292 DUOX1Q9NRD9 1551 aa23.7■■□□□ 1.38
USB1-213ENST00000566292 GOLGA2Q08379 1002 aa23.7■■□□□ 1.38
USB1-213ENST00000566292 RIC3Q7Z5B4 369 aa23.7■■□□□ 1.38
USB1-213ENST00000566292 NIM1KQ8IY84 436 aa23.7■■□□□ 1.38
USB1-213ENST00000566292 TSPYL6Q8N831 410 aa23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms