RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 PSMD1Q99460 953 aa24.49■■□□□ 1.51
CLN3-218ENST00000565688 CHL1O00533 1208 aa24.48■■□□□ 1.51
CLN3-218ENST00000565688 IARSP41252 1262 aaKnown RBP24.48■■□□□ 1.51
CLN3-218ENST00000565688 CHADLQ6NUI6 762 aa24.48■■□□□ 1.51
CLN3-218ENST00000565688 SYNE4Q8N205 404 aa24.48■■□□□ 1.51
CLN3-218ENST00000565688 RBM17Q96I25 401 aaKnown RBP24.48■■□□□ 1.51
CLN3-218ENST00000565688 PROSER3Q2NL68 480 aa24.47■■□□□ 1.51
CLN3-218ENST00000565688 CRAMP1Q96RY5 1269 aa24.47■■□□□ 1.51
CLN3-218ENST00000565688 UTP14AQ9BVJ6 771 aaKnown RBP24.47■■□□□ 1.51
CLN3-218ENST00000565688 RNF123Q5XPI4 1314 aa24.46■■□□□ 1.51
CLN3-218ENST00000565688 HSP90AB3PQ58FF7 597 aa24.46■■□□□ 1.51
CLN3-218ENST00000565688 ADAMTS8Q9UP79 889 aa24.46■■□□□ 1.51
CLN3-218ENST00000565688 TRIM35Q9UPQ4 493 aa24.46■■□□□ 1.51
CLN3-218ENST00000565688 SNED1Q8TER0 1413 aa24.45■■□□□ 1.51
CLN3-218ENST00000565688 ANXA1P04083 346 aa24.45■■□□□ 1.5
CLN3-218ENST00000565688 NLRP3Q96P20 1036 aa24.45■■□□□ 1.5
CLN3-218ENST00000565688 DDX21Q9NR30 783 aaKnown RBP eCLIP24.45■■□□□ 1.5
CLN3-218ENST00000565688 SCN4AP35499 1836 aa24.45■■□□□ 1.5
CLN3-218ENST00000565688 SLC10A5Q5PT55 438 aa24.44■■□□□ 1.5
CLN3-218ENST00000565688 COPS6Q7L5N1 327 aa24.44■■□□□ 1.5
CLN3-218ENST00000565688 JDP2Q8WYK2 163 aa24.44■■□□□ 1.5
CLN3-218ENST00000565688 NECTIN2Q92692 538 aa24.44■■□□□ 1.5
CLN3-218ENST00000565688 LAS1LQ9Y4W2 734 aaKnown RBP24.44■■□□□ 1.5
CLN3-218ENST00000565688 ZNF541Q9H0D2 1346 aa24.43■■□□□ 1.5
CLN3-218ENST00000565688 FZD9O00144 591 aa24.43■■□□□ 1.5
CLN3-218ENST00000565688 LDHDQ86WU2 507 aa24.43■■□□□ 1.5
CLN3-218ENST00000565688 XAGE3Q8WTP9 111 aa24.43■■□□□ 1.5
CLN3-218ENST00000565688 TAF1DQ9H5J8 278 aaPredicted RBP24.43■■□□□ 1.5
CLN3-218ENST00000565688 PRKRIP1Q9H875 184 aaPredicted RBP24.43■■□□□ 1.5
CLN3-218ENST00000565688 PPEF1O14829 653 aaPredicted RBP24.42■■□□□ 1.5
CLN3-218ENST00000565688 HOXB7P09629 217 aa24.42■■□□□ 1.5
CLN3-218ENST00000565688 AIMP1Q12904 312 aaKnown RBP24.42■■□□□ 1.5
CLN3-218ENST00000565688 TMX4Q9H1E5 349 aaPredicted RBP24.42■■□□□ 1.5
CLN3-218ENST00000565688 GPC2Q8N158 579 aa24.41■■□□□ 1.5
CLN3-218ENST00000565688 HACL1Q9UJ83 578 aa24.41■■□□□ 1.5
CLN3-218ENST00000565688 PCNTO95613 3336 aa24.41■■□□□ 1.5
CLN3-218ENST00000565688 POTEIP0CG38 1075 aa24.4■■□□□ 1.5
CLN3-218ENST00000565688 POTEJP0CG39 1038 aa24.4■■□□□ 1.5
CLN3-218ENST00000565688 TCIRG1Q13488 830 aa24.4■■□□□ 1.5
CLN3-218ENST00000565688 KRT24Q2M2I5 525 aa24.4■■□□□ 1.5
CLN3-218ENST00000565688 C3orf67Q6ZVT6 689 aa24.4■■□□□ 1.5
CLN3-218ENST00000565688 CFAP44Q96MT7 982 aa24.4■■□□□ 1.5
CLN3-218ENST00000565688 HDGFL1Q5TGJ6 251 aa24.39■■□□□ 1.49
CLN3-218ENST00000565688 NLRP10Q86W26 655 aa24.39■■□□□ 1.49
CLN3-218ENST00000565688 CHPF2Q9P2E5 772 aa24.39■■□□□ 1.49
CLN3-218ENST00000565688 EIF6P56537 245 aaKnown RBP24.38■■□□□ 1.49
CLN3-218ENST00000565688 PNMA8AQ86V59 439 aaPredicted RBP24.38■■□□□ 1.49
CLN3-218ENST00000565688 CREBZFQ9NS37 354 aa24.38■■□□□ 1.49
CLN3-218ENST00000565688 ANKRD36CQ5JPF3 1778 aa24.38■■□□□ 1.49
CLN3-218ENST00000565688 LARGE2Q8N3Y3 721 aa24.37■■□□□ 1.49
CLN3-218ENST00000565688 DBF4Q9UBU7 674 aaPredicted RBP24.37■■□□□ 1.49
CLN3-218ENST00000565688 TRMT112Q9UI30 125 aaKnown RBP24.37■■□□□ 1.49
CLN3-218ENST00000565688 ATP6V0A2Q9Y487 856 aa24.37■■□□□ 1.49
CLN3-218ENST00000565688 TCERG1O14776 1098 aaKnown RBP24.36■■□□□ 1.49
CLN3-218ENST00000565688 EPHX2P34913 555 aa24.36■■□□□ 1.49
CLN3-218ENST00000565688 EAPPQ56P03 285 aaPredicted RBP24.36■■□□□ 1.49
CLN3-218ENST00000565688 VPS33BQ9H267 617 aa24.36■■□□□ 1.49
CLN3-218ENST00000565688 SH3TC1Q8TE82 1336 aa24.35■■□□□ 1.49
CLN3-218ENST00000565688 BBOX1O75936 387 aa24.35■■□□□ 1.49
CLN3-218ENST00000565688 CALD1Q05682 793 aaKnown RBP24.35■■□□□ 1.49
CLN3-218ENST00000565688 PLBD2Q8NHP8 589 aa24.35■■□□□ 1.49
CLN3-218ENST00000565688 ABCC4O15439 1325 aa24.35■■□□□ 1.49
CLN3-218ENST00000565688 HCLS1P14317 486 aaPredicted RBP24.34■■□□□ 1.49
CLN3-218ENST00000565688 ANKRD13DQ6ZTN6 518 aa24.34■■□□□ 1.49
CLN3-218ENST00000565688 HYPKQ9NX55 129 aa24.34■■□□□ 1.49
CLN3-218ENST00000565688 PASKQ96RG2 1323 aa24.34■■□□□ 1.49
CLN3-218ENST00000565688 DUSP27Q5VZP5 1158 aa24.33■■□□□ 1.49
CLN3-218ENST00000565688 SUPT20HQ8NEM7 779 aa24.33■■□□□ 1.49
CLN3-218ENST00000565688 MBIPQ9NS73 344 aa24.33■■□□□ 1.49
CLN3-218ENST00000565688 CLEC11AQ9Y240 323 aa24.33■■□□□ 1.49
CLN3-218ENST00000565688 GJA3Q9Y6H8 435 aa24.33■■□□□ 1.49
CLN3-218ENST00000565688 COL4A5P29400 1685 aa24.32■■□□□ 1.48
CLN3-218ENST00000565688 DDX46Q7L014 1031 aaKnown RBP24.32■■□□□ 1.48
CLN3-218ENST00000565688 NIM1KQ8IY84 436 aa24.32■■□□□ 1.48
CLN3-218ENST00000565688 APAF1O14727 1248 aa24.31■■□□□ 1.48
CLN3-218ENST00000565688 PPIP5K2O43314 1243 aa24.31■■□□□ 1.48
CLN3-218ENST00000565688 ZNF853P0CG23 659 aa24.31■■□□□ 1.48
CLN3-218ENST00000565688 LMOD1P29536 600 aaPredicted RBP24.31■■□□□ 1.48
CLN3-218ENST00000565688 SP8Q8IXZ3 490 aa24.31■■□□□ 1.48
CLN3-218ENST00000565688 IFT57Q9NWB7 429 aa24.31■■□□□ 1.48
CLN3-218ENST00000565688 ADAMTSL1Q8N6G6 1762 aa24.3■■□□□ 1.48
CLN3-218ENST00000565688 ITGBL1O95965 494 aaPredicted RBP24.3■■□□□ 1.48
CLN3-218ENST00000565688 GNAI1P63096 354 aa24.3■■□□□ 1.48
CLN3-218ENST00000565688 RTFDC1Q9BY42 306 aaPredicted RBP24.3■■□□□ 1.48
CLN3-218ENST00000565688 GRAPQ13588 217 aa24.29■■□□□ 1.48
CLN3-218ENST00000565688 DPP8Q6V1X1 898 aaPredicted RBP24.29■■□□□ 1.48
CLN3-218ENST00000565688 TMC4Q7Z404 712 aa24.29■■□□□ 1.48
CLN3-218ENST00000565688 SLC51AQ86UW1 340 aa24.29■■□□□ 1.48
CLN3-218ENST00000565688 GRAPLQ8TC17 118 aaPredicted RBP24.29■■□□□ 1.48
CLN3-218ENST00000565688 ISCA1Q9BUE6 129 aa24.29■■□□□ 1.48
CLN3-218ENST00000565688 LAMB2P55268 1798 aa24.29■■□□□ 1.48
CLN3-218ENST00000565688 AOC3Q16853 763 aa24.28■■□□□ 1.48
CLN3-218ENST00000565688 TMEM88BA6NKF7 163 aa24.27■■□□□ 1.48
CLN3-218ENST00000565688 CNTROBQ8N137 903 aa24.27■■□□□ 1.48
CLN3-218ENST00000565688 MPNDQ8N594 471 aa24.27■■□□□ 1.48
CLN3-218ENST00000565688 MKRN1Q9UHC7 482 aaKnown RBP24.27■■□□□ 1.48
CLN3-218ENST00000565688 HSPA1AP0DMV8 641 aaKnown RBP24.26■■□□□ 1.47
CLN3-218ENST00000565688 HSPA1BP0DMV9 641 aaKnown RBP24.26■■□□□ 1.47
CLN3-218ENST00000565688 SCNN1DP51172 638 aa24.26■■□□□ 1.47
CLN3-218ENST00000565688 TRIM28Q13263 835 aaKnown RBP24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms