RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 IARSP41252 1262 aaKnown RBP22.45■■□□□ 1.18
CLN3-216ENST00000565316 PPP1R42Q7Z4L9 355 aa22.45■■□□□ 1.18
CLN3-216ENST00000565316 RPGRQ92834 1020 aaKnown RBP22.45■■□□□ 1.18
CLN3-216ENST00000565316 CRAMP1Q96RY5 1269 aa22.45■■□□□ 1.18
CLN3-216ENST00000565316 ZNF541Q9H0D2 1346 aa22.45■■□□□ 1.18
CLN3-216ENST00000565316 FZD9O00144 591 aa22.44■■□□□ 1.18
CLN3-216ENST00000565316 POTEIP0CG38 1075 aa22.44■■□□□ 1.18
CLN3-216ENST00000565316 POTEJP0CG39 1038 aa22.44■■□□□ 1.18
CLN3-216ENST00000565316 SLC10A5Q5PT55 438 aa22.44■■□□□ 1.18
CLN3-216ENST00000565316 CCDC146Q8IYE0 955 aa22.44■■□□□ 1.18
CLN3-216ENST00000565316 RUNDC1Q96C34 613 aa22.44■■□□□ 1.18
CLN3-216ENST00000565316 TAF1DQ9H5J8 278 aaPredicted RBP22.44■■□□□ 1.18
CLN3-216ENST00000565316 TRIM35Q9UPQ4 493 aa22.44■■□□□ 1.18
CLN3-216ENST00000565316 ANXA1P04083 346 aa22.43■■□□□ 1.18
CLN3-216ENST00000565316 GRIPAP1Q4V328 841 aa22.43■■□□□ 1.18
CLN3-216ENST00000565316 C3orf67Q6ZVT6 689 aa22.43■■□□□ 1.18
CLN3-216ENST00000565316 RBM17Q96I25 401 aaKnown RBP22.43■■□□□ 1.18
CLN3-216ENST00000565316 SCN4AP35499 1836 aa22.41■■□□□ 1.18
CLN3-216ENST00000565316 NEUROD2Q15784 382 aa22.41■■□□□ 1.18
CLN3-216ENST00000565316 LDHDQ86WU2 507 aa22.41■■□□□ 1.18
CLN3-216ENST00000565316 UTP14AQ9BVJ6 771 aaKnown RBP22.41■■□□□ 1.18
CLN3-216ENST00000565316 WDR43Q15061 677 aaKnown RBP eCLIP22.4■■□□□ 1.18
CLN3-216ENST00000565316 COPS6Q7L5N1 327 aa22.4■■□□□ 1.18
CLN3-216ENST00000565316 NLRP3Q96P20 1036 aa22.4■■□□□ 1.18
CLN3-216ENST00000565316 DDX21Q9NR30 783 aaKnown RBP eCLIP22.4■■□□□ 1.18
CLN3-216ENST00000565316 ADAMTS8Q9UP79 889 aa22.4■■□□□ 1.18
CLN3-216ENST00000565316 RNF123Q5XPI4 1314 aa22.4■■□□□ 1.18
CLN3-216ENST00000565316 HSP90AB3PQ58FF7 597 aa22.39■■□□□ 1.18
CLN3-216ENST00000565316 XAGE3Q8WTP9 111 aa22.39■■□□□ 1.18
CLN3-216ENST00000565316 CREBZFQ9NS37 354 aa22.39■■□□□ 1.18
CLN3-216ENST00000565316 PPEF1O14829 653 aaPredicted RBP22.38■■□□□ 1.17
CLN3-216ENST00000565316 KRT24Q2M2I5 525 aa22.38■■□□□ 1.17
CLN3-216ENST00000565316 GPC2Q8N158 579 aa22.38■■□□□ 1.17
CLN3-216ENST00000565316 JDP2Q8WYK2 163 aa22.38■■□□□ 1.17
CLN3-216ENST00000565316 NECTIN2Q92692 538 aa22.38■■□□□ 1.17
CLN3-216ENST00000565316 HACL1Q9UJ83 578 aa22.38■■□□□ 1.17
CLN3-216ENST00000565316 PASKQ96RG2 1323 aa22.38■■□□□ 1.17
CLN3-216ENST00000565316 NLRP10Q86W26 655 aa22.37■■□□□ 1.17
CLN3-216ENST00000565316 COL4A5P29400 1685 aa22.37■■□□□ 1.17
CLN3-216ENST00000565316 HOXB7P09629 217 aa22.36■■□□□ 1.17
CLN3-216ENST00000565316 TCIRG1Q13488 830 aa22.36■■□□□ 1.17
CLN3-216ENST00000565316 SLC51AQ86UW1 340 aa22.36■■□□□ 1.17
CLN3-216ENST00000565316 PRKRIP1Q9H875 184 aaPredicted RBP22.36■■□□□ 1.17
CLN3-216ENST00000565316 EPHX2P34913 555 aa22.35■■□□□ 1.17
CLN3-216ENST00000565316 AIMP1Q12904 312 aaKnown RBP22.35■■□□□ 1.17
CLN3-216ENST00000565316 ATP6V0A2Q9Y487 856 aa22.35■■□□□ 1.17
CLN3-216ENST00000565316 ITGBL1O95965 494 aaPredicted RBP22.34■■□□□ 1.17
CLN3-216ENST00000565316 PNMA8AQ86V59 439 aaPredicted RBP22.34■■□□□ 1.17
CLN3-216ENST00000565316 CHPF2Q9P2E5 772 aa22.34■■□□□ 1.17
CLN3-216ENST00000565316 LAS1LQ9Y4W2 734 aaKnown RBP22.34■■□□□ 1.17
CLN3-216ENST00000565316 ADAMTSL1Q8N6G6 1762 aa22.34■■□□□ 1.17
CLN3-216ENST00000565316 EIF6P56537 245 aaKnown RBP22.33■■□□□ 1.17
CLN3-216ENST00000565316 LARGE2Q8N3Y3 721 aa22.33■■□□□ 1.17
CLN3-216ENST00000565316 CFAP44Q96MT7 982 aa22.33■■□□□ 1.17
CLN3-216ENST00000565316 VPS33BQ9H267 617 aa22.33■■□□□ 1.17
CLN3-216ENST00000565316 ABCC4O15439 1325 aa22.33■■□□□ 1.17
CLN3-216ENST00000565316 TCERG1O14776 1098 aaKnown RBP22.32■■□□□ 1.16
CLN3-216ENST00000565316 EAPPQ56P03 285 aaPredicted RBP22.32■■□□□ 1.16
CLN3-216ENST00000565316 HDGFL1Q5TGJ6 251 aa22.32■■□□□ 1.16
CLN3-216ENST00000565316 ANKRD36CQ5JPF3 1778 aa22.32■■□□□ 1.16
CLN3-216ENST00000565316 BBOX1O75936 387 aa22.31■■□□□ 1.16
CLN3-216ENST00000565316 HCLS1P14317 486 aaPredicted RBP22.31■■□□□ 1.16
CLN3-216ENST00000565316 COL13A1Q5TAT6 717 aaPredicted RBP22.31■■□□□ 1.16
CLN3-216ENST00000565316 RTFDC1Q9BY42 306 aaPredicted RBP22.31■■□□□ 1.16
CLN3-216ENST00000565316 TRMT112Q9UI30 125 aaKnown RBP22.31■■□□□ 1.16
CLN3-216ENST00000565316 SH3TC1Q8TE82 1336 aa22.31■■□□□ 1.16
CLN3-216ENST00000565316 ZNF853P0CG23 659 aa22.31■■□□□ 1.16
CLN3-216ENST00000565316 PLBD2Q8NHP8 589 aa22.31■■□□□ 1.16
CLN3-216ENST00000565316 TMX4Q9H1E5 349 aaPredicted RBP22.31■■□□□ 1.16
CLN3-216ENST00000565316 DBF4Q9UBU7 674 aaPredicted RBP22.31■■□□□ 1.16
CLN3-216ENST00000565316 ANKRD13DQ6ZTN6 518 aa22.3■■□□□ 1.16
CLN3-216ENST00000565316 SP8Q8IXZ3 490 aa22.3■■□□□ 1.16
CLN3-216ENST00000565316 CLEC11AQ9Y240 323 aa22.3■■□□□ 1.16
CLN3-216ENST00000565316 GJA3Q9Y6H8 435 aa22.3■■□□□ 1.16
CLN3-216ENST00000565316 HSPA1AP0DMV8 641 aaKnown RBP22.29■■□□□ 1.16
CLN3-216ENST00000565316 HSPA1BP0DMV9 641 aaKnown RBP22.29■■□□□ 1.16
CLN3-216ENST00000565316 DUSP27Q5VZP5 1158 aa22.29■■□□□ 1.16
CLN3-216ENST00000565316 NIM1KQ8IY84 436 aa22.29■■□□□ 1.16
CLN3-216ENST00000565316 ISCA1Q9BUE6 129 aa22.29■■□□□ 1.16
CLN3-216ENST00000565316 MBIPQ9NS73 344 aa22.29■■□□□ 1.16
CLN3-216ENST00000565316 MKRN1Q9UHC7 482 aaKnown RBP22.29■■□□□ 1.16
CLN3-216ENST00000565316 CNTNAP1P78357 1384 aa22.28■■□□□ 1.16
CLN3-216ENST00000565316 TMEM88BA6NKF7 163 aa22.28■■□□□ 1.16
CLN3-216ENST00000565316 PPIP5K2O43314 1243 aa22.28■■□□□ 1.16
CLN3-216ENST00000565316 SCNN1DP51172 638 aa22.28■■□□□ 1.16
CLN3-216ENST00000565316 DDX46Q7L014 1031 aaKnown RBP22.28■■□□□ 1.16
CLN3-216ENST00000565316 CNTROBQ8N137 903 aa22.28■■□□□ 1.16
CLN3-216ENST00000565316 SUPT20HQ8NEM7 779 aa22.28■■□□□ 1.16
CLN3-216ENST00000565316 HYPKQ9NX55 129 aa22.28■■□□□ 1.16
CLN3-216ENST00000565316 LAMB2P55268 1798 aa22.27■■□□□ 1.16
CLN3-216ENST00000565316 GRAPQ13588 217 aa22.27■■□□□ 1.16
CLN3-216ENST00000565316 AOC3Q16853 763 aa22.27■■□□□ 1.16
CLN3-216ENST00000565316 GRAPLQ8TC17 118 aaPredicted RBP22.27■■□□□ 1.16
CLN3-216ENST00000565316 LTBP1Q14766 1721 aa22.26■■□□□ 1.15
CLN3-216ENST00000565316 LMOD1P29536 600 aaPredicted RBP22.26■■□□□ 1.15
CLN3-216ENST00000565316 TRIM28Q13263 835 aaKnown RBP22.26■■□□□ 1.15
CLN3-216ENST00000565316 MAP1SQ66K74 1059 aaPredicted RBP22.26■■□□□ 1.15
CLN3-216ENST00000565316 IFT57Q9NWB7 429 aa22.26■■□□□ 1.15
CLN3-216ENST00000565316 APAF1O14727 1248 aa22.25■■□□□ 1.15
CLN3-216ENST00000565316 EPS15P42566 896 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms