RNA–Protein interactions for RNA: ENST00000563836.1

SMG1-209, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5

Gene SMG1, Length 565 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-209ENST00000563836 SOBPA7XYQ1 873 aa11.36□□□□□ -0.59
SMG1-209ENST00000563836 MEN1O00255 615 aa11.36□□□□□ -0.59
SMG1-209ENST00000563836 MAN1A2O60476 641 aa11.36□□□□□ -0.59
SMG1-209ENST00000563836 SCNN1DP51172 638 aa11.36□□□□□ -0.59
SMG1-209ENST00000563836 ESCO1Q5FWF5 840 aa11.36□□□□□ -0.59
SMG1-209ENST00000563836 XAGE2Q96GT9 111 aa11.36□□□□□ -0.59
SMG1-209ENST00000563836 ESYT1Q9BSJ8 1104 aa11.36□□□□□ -0.59
SMG1-209ENST00000563836 EIF3AQ14152 1382 aaKnown RBP11.36□□□□□ -0.59
SMG1-209ENST00000563836 RIMS1Q86UR5 1692 aaKnown RBP11.36□□□□□ -0.59
SMG1-209ENST00000563836 PPLO60437 1756 aa11.36□□□□□ -0.59
SMG1-209ENST00000563836 TRPM1Q7Z4N2 1603 aa11.35□□□□□ -0.59
SMG1-209ENST00000563836 GTF2IP78347 998 aa11.35□□□□□ -0.59
SMG1-209ENST00000563836 NBPF8Q3BBV2 869 aa11.35□□□□□ -0.59
SMG1-209ENST00000563836 CFAP70Q5T0N1 1121 aa11.35□□□□□ -0.59
SMG1-209ENST00000563836 DIEXFQ68CQ4 756 aaKnown RBP11.35□□□□□ -0.59
SMG1-209ENST00000563836 TRIM50Q86XT4 487 aa11.35□□□□□ -0.59
SMG1-209ENST00000563836 CNKSR1Q969H4 720 aa11.35□□□□□ -0.59
SMG1-209ENST00000563836 NLRP3Q96P20 1036 aa11.35□□□□□ -0.59
SMG1-209ENST00000563836 ETNK1Q9HBU6 452 aa11.35□□□□□ -0.59
SMG1-209ENST00000563836 MKRN1Q9UHC7 482 aaKnown RBP11.35□□□□□ -0.59
SMG1-209ENST00000563836 C3P01024 1663 aa11.35□□□□□ -0.59
SMG1-209ENST00000563836 IFT172Q9UG01 1749 aa11.35□□□□□ -0.59
SMG1-209ENST00000563836 KIAA1210Q9ULL0 1709 aa11.35□□□□□ -0.59
SMG1-209ENST00000563836 NLRP1Q9C000 1473 aa11.34□□□□□ -0.59
SMG1-209ENST00000563836 WASLO00401 505 aaPredicted RBP11.34□□□□□ -0.59
SMG1-209ENST00000563836 STAU1O95793 577 aaKnown RBP11.34□□□□□ -0.59
SMG1-209ENST00000563836 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.34□□□□□ -0.59
SMG1-209ENST00000563836 KDM5AP29375 1690 aaKnown RBP11.33□□□□□ -0.6
SMG1-209ENST00000563836 MYO5BQ9ULV0 1848 aa11.33□□□□□ -0.6
SMG1-209ENST00000563836 USP47Q96K76 1375 aa11.33□□□□□ -0.6
SMG1-209ENST00000563836 FIGNL2A6NMB9 653 aa11.33□□□□□ -0.6
SMG1-209ENST00000563836 HSPA5P11021 654 aaKnown RBP11.33□□□□□ -0.6
SMG1-209ENST00000563836 LMOD1P29536 600 aaPredicted RBP11.33□□□□□ -0.6
SMG1-209ENST00000563836 GDF10P55107 478 aa11.33□□□□□ -0.6
SMG1-209ENST00000563836 MADDQ8WXG6 1647 aa11.33□□□□□ -0.6
SMG1-209ENST00000563836 TMEM131LA2VDJ0 1609 aa11.32□□□□□ -0.6
SMG1-209ENST00000563836 LAMC1P11047 1609 aa11.32□□□□□ -0.6
SMG1-209ENST00000563836 INHAP05111 366 aa11.32□□□□□ -0.6
SMG1-209ENST00000563836 ATP1A2P50993 1020 aa11.32□□□□□ -0.6
SMG1-209ENST00000563836 CLDN10P78369 228 aa11.32□□□□□ -0.6
SMG1-209ENST00000563836 GRIP2Q9C0E4 1043 aa11.32□□□□□ -0.6
SMG1-209ENST00000563836 EID1Q9Y6B2 187 aa11.32□□□□□ -0.6
SMG1-209ENST00000563836 TMEM229AB2RXF0 380 aa11.31□□□□□ -0.6
SMG1-209ENST00000563836 ZBTB7BO15156 539 aaPredicted RBP11.31□□□□□ -0.6
SMG1-209ENST00000563836 CENPCQ03188 943 aa11.31□□□□□ -0.6
SMG1-209ENST00000563836 THEMISQ8N1K5 641 aaPredicted RBP11.31□□□□□ -0.6
SMG1-209ENST00000563836 SETD1BQ9UPS6 1966 aaKnown RBP11.3□□□□□ -0.6
SMG1-209ENST00000563836 CDCA8Q53HL2 280 aa11.3□□□□□ -0.6
SMG1-209ENST00000563836 LYSMD3Q7Z3D4 306 aa11.3□□□□□ -0.6
SMG1-209ENST00000563836 OGFOD1Q8N543 542 aa11.3□□□□□ -0.6
SMG1-209ENST00000563836 C1orf115Q9H7X2 142 aa11.3□□□□□ -0.6
SMG1-209ENST00000563836 SERPINA10Q9UK55 444 aa11.3□□□□□ -0.6
SMG1-209ENST00000563836 KIAA1024Q9UPX6 916 aa11.3□□□□□ -0.6
SMG1-209ENST00000563836 ADAMTSL3P82987 1691 aa11.3□□□□□ -0.6
SMG1-209ENST00000563836 ZFYVE9O95405 1425 aa11.29□□□□□ -0.6
SMG1-209ENST00000563836 CEBPAP49715 358 aaPredicted RBP11.29□□□□□ -0.6
SMG1-209ENST00000563836 SLC27A3Q5K4L6 730 aa11.29□□□□□ -0.6
SMG1-209ENST00000563836 LARGE2Q8N3Y3 721 aa11.29□□□□□ -0.6
SMG1-209ENST00000563836 FHDC1Q9C0D6 1143 aaPredicted RBP11.29□□□□□ -0.6
SMG1-209ENST00000563836 DNAAF2Q9NVR5 837 aaKnown RBP11.29□□□□□ -0.6
SMG1-209ENST00000563836 NEXMIFQ5QGS0 1516 aa11.29□□□□□ -0.6
SMG1-209ENST00000563836 RIMS2Q9UQ26 1411 aa11.28□□□□□ -0.6
SMG1-209ENST00000563836 PSME1Q06323 249 aa11.28□□□□□ -0.6
SMG1-209ENST00000563836 CCDC97Q96F63 343 aaPredicted RBP11.28□□□□□ -0.6
SMG1-209ENST00000563836 SLC4A9Q96Q91 983 aa11.28□□□□□ -0.6
SMG1-209ENST00000563836 HIRIP3Q9BW71 556 aaPredicted RBP11.28□□□□□ -0.6
SMG1-209ENST00000563836 POLR1AO95602 1720 aaPredicted RBP11.28□□□□□ -0.6
SMG1-209ENST00000563836 ADGRF5Q8IZF2 1346 aa11.28□□□□□ -0.6
SMG1-209ENST00000563836 GPRASP1Q5JY77 1395 aa11.28□□□□□ -0.6
SMG1-209ENST00000563836 A2ML1A8K2U0 1454 aa11.27□□□□□ -0.6
SMG1-209ENST00000563836 SPATA31C2B4DYI2 1134 aa11.27□□□□□ -0.61
SMG1-209ENST00000563836 DKK1O94907 266 aa11.27□□□□□ -0.61
SMG1-209ENST00000563836 TMF1P82094 1093 aa11.27□□□□□ -0.61
SMG1-209ENST00000563836 PRICKLE2Q7Z3G6 844 aa11.27□□□□□ -0.61
SMG1-209ENST00000563836 SIX5Q8N196 739 aa11.27□□□□□ -0.61
SMG1-209ENST00000563836 ZNF775Q96BV0 537 aaPredicted RBP11.27□□□□□ -0.61
SMG1-209ENST00000563836 POLR3GLQ9BT43 218 aa11.27□□□□□ -0.61
SMG1-209ENST00000563836 VRTNQ9H8Y1 702 aa11.27□□□□□ -0.61
SMG1-209ENST00000563836 NXF1Q9UBU9 619 aaKnown RBP11.27□□□□□ -0.61
SMG1-209ENST00000563836 SETBP1Q9Y6X0 1596 aa11.27□□□□□ -0.61
SMG1-209ENST00000563836 UBR1Q8IWV7 1749 aa11.26□□□□□ -0.61
SMG1-209ENST00000563836 SCAF11Q99590 1463 aaKnown RBP11.26□□□□□ -0.61
SMG1-209ENST00000563836 RASA1P20936 1047 aa11.26□□□□□ -0.61
SMG1-209ENST00000563836 PTSQ03393 145 aa11.26□□□□□ -0.61
SMG1-209ENST00000563836 CCDC102BQ68D86 513 aa11.26□□□□□ -0.61
SMG1-209ENST00000563836 TPCN2Q8NHX9 752 aa11.26□□□□□ -0.61
SMG1-209ENST00000563836 ZSCAN10Q96SZ4 725 aaPredicted RBP11.26□□□□□ -0.61
SMG1-209ENST00000563836 C14orf93Q9H972 538 aaKnown RBP11.26□□□□□ -0.61
SMG1-209ENST00000563836 MYO3AQ8NEV4 1616 aa11.26□□□□□ -0.61
SMG1-209ENST00000563836 PIK3C2GO75747 1445 aa11.26□□□□□ -0.61
SMG1-209ENST00000563836 NRXN1Q9ULB1 1477 aa11.25□□□□□ -0.61
SMG1-209ENST00000563836 ST20-MTHFSA0A0A6YYL1 179 aa11.25□□□□□ -0.61
SMG1-209ENST00000563836 RFX1P22670 979 aa11.25□□□□□ -0.61
SMG1-209ENST00000563836 SMTNP53814 917 aa11.25□□□□□ -0.61
SMG1-209ENST00000563836 TLR1Q15399 786 aa11.25□□□□□ -0.61
SMG1-209ENST00000563836 NBPF1Q3BBV0 1214 aa11.25□□□□□ -0.61
SMG1-209ENST00000563836 NPAS3Q8IXF0 933 aa11.25□□□□□ -0.61
SMG1-209ENST00000563836 CCDC82Q8N4S0 544 aa11.25□□□□□ -0.61
SMG1-209ENST00000563836 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.25□□□□□ -0.61
SMG1-209ENST00000563836 ZNF358Q9NW07 568 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms