RNA–Protein interactions for RNA: ENST00000563404.1

HDGFL3-203, Transcript of HDGF like 3, humanhuman

TSL 5

Gene HDGFL3, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-203ENST00000563404 PSMD1Q99460 953 aa22.16■■□□□ 1.14
HDGFL3-203ENST00000563404 PNNQ9H307 717 aaKnown RBP22.16■■□□□ 1.14
HDGFL3-203ENST00000563404 TSPYL4Q9UJ04 414 aa22.16■■□□□ 1.14
HDGFL3-203ENST00000563404 ERBB4Q15303 1308 aa22.15■■□□□ 1.14
HDGFL3-203ENST00000563404 MKRN1Q9UHC7 482 aaKnown RBP22.15■■□□□ 1.14
HDGFL3-203ENST00000563404 RIPK4P57078 832 aa22.14■■□□□ 1.13
HDGFL3-203ENST00000563404 PROSER3Q2NL68 480 aa22.14■■□□□ 1.13
HDGFL3-203ENST00000563404 HACL1Q9UJ83 578 aa22.14■■□□□ 1.13
HDGFL3-203ENST00000563404 ADAMTSL1Q8N6G6 1762 aa22.14■■□□□ 1.13
HDGFL3-203ENST00000563404 RNF123Q5XPI4 1314 aa22.13■■□□□ 1.13
HDGFL3-203ENST00000563404 ITGBL1O95965 494 aaPredicted RBP22.13■■□□□ 1.13
HDGFL3-203ENST00000563404 ANXA1P04083 346 aa22.13■■□□□ 1.13
HDGFL3-203ENST00000563404 EAPPQ56P03 285 aaPredicted RBP22.13■■□□□ 1.13
HDGFL3-203ENST00000563404 RPGRQ92834 1020 aaKnown RBP22.13■■□□□ 1.13
HDGFL3-203ENST00000563404 EIF2S2P20042 333 aaKnown RBP22.12■■□□□ 1.13
HDGFL3-203ENST00000563404 EPHX2P34913 555 aa22.12■■□□□ 1.13
HDGFL3-203ENST00000563404 TMPOP42166 694 aaKnown RBP22.11■■□□□ 1.13
HDGFL3-203ENST00000563404 CC2D2BQ6DHV5 1058 aa22.11■■□□□ 1.13
HDGFL3-203ENST00000563404 CRAMP1Q96RY5 1269 aa22.11■■□□□ 1.13
HDGFL3-203ENST00000563404 TCERG1O14776 1098 aaKnown RBP22.1■■□□□ 1.13
HDGFL3-203ENST00000563404 RALBP1Q15311 655 aa22.1■■□□□ 1.13
HDGFL3-203ENST00000563404 GPC2Q8N158 579 aa22.1■■□□□ 1.13
HDGFL3-203ENST00000563404 RBM17Q96I25 401 aaKnown RBP22.1■■□□□ 1.13
HDGFL3-203ENST00000563404 CNTNAP1P78357 1384 aa22.1■■□□□ 1.13
HDGFL3-203ENST00000563404 PPEF1O14829 653 aaPredicted RBP22.09■■□□□ 1.13
HDGFL3-203ENST00000563404 PPP1R42Q7Z4L9 355 aa22.09■■□□□ 1.13
HDGFL3-203ENST00000563404 TNS4Q8IZW8 715 aa22.09■■□□□ 1.13
HDGFL3-203ENST00000563404 BABAM1Q9NWV8 329 aa22.09■■□□□ 1.13
HDGFL3-203ENST00000563404 PARP10Q53GL7 1025 aa22.08■■□□□ 1.13
HDGFL3-203ENST00000563404 JDP2Q8WYK2 163 aa22.08■■□□□ 1.13
HDGFL3-203ENST00000563404 CLEC11AQ9Y240 323 aa22.08■■□□□ 1.13
HDGFL3-203ENST00000563404 LTBP1Q14766 1721 aa22.08■■□□□ 1.12
HDGFL3-203ENST00000563404 SLC10A5Q5PT55 438 aa22.07■■□□□ 1.12
HDGFL3-203ENST00000563404 MAP1SQ66K74 1059 aaPredicted RBP22.07■■□□□ 1.12
HDGFL3-203ENST00000563404 NECTIN2Q92692 538 aa22.07■■□□□ 1.12
HDGFL3-203ENST00000563404 UTP14AQ9BVJ6 771 aaKnown RBP22.07■■□□□ 1.12
HDGFL3-203ENST00000563404 TMEM88BA6NKF7 163 aa22.06■■□□□ 1.12
HDGFL3-203ENST00000563404 KRT24Q2M2I5 525 aa22.06■■□□□ 1.12
HDGFL3-203ENST00000563404 PNMA8AQ86V59 439 aaPredicted RBP22.06■■□□□ 1.12
HDGFL3-203ENST00000563404 CCDC146Q8IYE0 955 aa22.06■■□□□ 1.12
HDGFL3-203ENST00000563404 NLRP3Q96P20 1036 aa22.06■■□□□ 1.12
HDGFL3-203ENST00000563404 GJA3Q9Y6H8 435 aa22.06■■□□□ 1.12
HDGFL3-203ENST00000563404 EIF6P56537 245 aaKnown RBP22.05■■□□□ 1.12
HDGFL3-203ENST00000563404 GRIPAP1Q4V328 841 aa22.05■■□□□ 1.12
HDGFL3-203ENST00000563404 COPS6Q7L5N1 327 aa22.05■■□□□ 1.12
HDGFL3-203ENST00000563404 CNTROBQ8N137 903 aa22.05■■□□□ 1.12
HDGFL3-203ENST00000563404 LARGE2Q8N3Y3 721 aa22.05■■□□□ 1.12
HDGFL3-203ENST00000563404 XAGE3Q8WTP9 111 aa22.05■■□□□ 1.12
HDGFL3-203ENST00000563404 CAPN15O75808 1086 aa22.04■■□□□ 1.12
HDGFL3-203ENST00000563404 VEGFBP49765 207 aa22.04■■□□□ 1.12
HDGFL3-203ENST00000563404 SCNN1DP51172 638 aa22.04■■□□□ 1.12
HDGFL3-203ENST00000563404 LMOD3Q0VAK6 560 aa22.04■■□□□ 1.12
HDGFL3-203ENST00000563404 ABCC4O15439 1325 aa22.04■■□□□ 1.12
HDGFL3-203ENST00000563404 CHL1O00533 1208 aa22.03■■□□□ 1.12
HDGFL3-203ENST00000563404 EPS15P42566 896 aa22.03■■□□□ 1.12
HDGFL3-203ENST00000563404 AIMP1Q12904 312 aaKnown RBP22.03■■□□□ 1.12
HDGFL3-203ENST00000563404 NEUROD2Q15784 382 aa22.03■■□□□ 1.12
HDGFL3-203ENST00000563404 NLRP10Q86W26 655 aa22.03■■□□□ 1.12
HDGFL3-203ENST00000563404 TRIM35Q9UPQ4 493 aa22.03■■□□□ 1.12
HDGFL3-203ENST00000563404 ATP6V0A2Q9Y487 856 aa22.03■■□□□ 1.12
HDGFL3-203ENST00000563404 HCLS1P14317 486 aaPredicted RBP22.02■■□□□ 1.12
HDGFL3-203ENST00000563404 DDX10Q13206 875 aaKnown RBP22.02■■□□□ 1.12
HDGFL3-203ENST00000563404 MYBBP1AQ9BQG0 1328 aaKnown RBP22.02■■□□□ 1.12
HDGFL3-203ENST00000563404 FOXN1O15353 648 aa22.01■■□□□ 1.11
HDGFL3-203ENST00000563404 AOC3Q16853 763 aa22.01■■□□□ 1.11
HDGFL3-203ENST00000563404 LAMB2P55268 1798 aa22.01■■□□□ 1.11
HDGFL3-203ENST00000563404 ANKRD36CQ5JPF3 1778 aa22.01■■□□□ 1.11
HDGFL3-203ENST00000563404 PPIP5K2O43314 1243 aa22■■□□□ 1.11
HDGFL3-203ENST00000563404 FMR1Q06787 632 aaKnown RBP eCLIP22■■□□□ 1.11
HDGFL3-203ENST00000563404 TCIRG1Q13488 830 aa22■■□□□ 1.11
HDGFL3-203ENST00000563404 DDX21Q9NR30 783 aaKnown RBP eCLIP22■■□□□ 1.11
HDGFL3-203ENST00000563404 HSP90AB3PQ58FF7 597 aa21.99■■□□□ 1.11
HDGFL3-203ENST00000563404 NIM1KQ8IY84 436 aa21.99■■□□□ 1.11
HDGFL3-203ENST00000563404 ZNF428Q96B54 188 aa21.99■■□□□ 1.11
HDGFL3-203ENST00000563404 RTFDC1Q9BY42 306 aaPredicted RBP21.99■■□□□ 1.11
HDGFL3-203ENST00000563404 LAS1LQ9Y4W2 734 aaKnown RBP21.99■■□□□ 1.11
HDGFL3-203ENST00000563404 RASSF10A6NK89 507 aa21.98■■□□□ 1.11
HDGFL3-203ENST00000563404 LMOD1P29536 600 aaPredicted RBP21.98■■□□□ 1.11
HDGFL3-203ENST00000563404 RUNDC1Q96C34 613 aa21.98■■□□□ 1.11
HDGFL3-203ENST00000563404 CHPF2Q9P2E5 772 aa21.98■■□□□ 1.11
HDGFL3-203ENST00000563404 TRMT112Q9UI30 125 aaKnown RBP21.98■■□□□ 1.11
HDGFL3-203ENST00000563404 SP8Q8IXZ3 490 aa21.97■■□□□ 1.11
HDGFL3-203ENST00000563404 BBOX1O75936 387 aa21.96■■□□□ 1.11
HDGFL3-203ENST00000563404 CXCL9Q07325 125 aa21.96■■□□□ 1.11
HDGFL3-203ENST00000563404 DEFB115Q30KQ5 88 aa21.96■■□□□ 1.11
HDGFL3-203ENST00000563404 VPS33BQ9H267 617 aa21.96■■□□□ 1.11
HDGFL3-203ENST00000563404 ADAMTS8Q9UP79 889 aa21.96■■□□□ 1.11
HDGFL3-203ENST00000563404 SH3TC1Q8TE82 1336 aa21.96■■□□□ 1.11
HDGFL3-203ENST00000563404 USP50Q70EL3 339 aaPredicted RBP21.95■■□□□ 1.1
HDGFL3-203ENST00000563404 WBP1LQ9NX94 342 aa21.95■■□□□ 1.1
HDGFL3-203ENST00000563404 ZNRF3Q9ULT6 936 aa21.95■■□□□ 1.1
HDGFL3-203ENST00000563404 TAF1P21675 1872 aa21.94■■□□□ 1.1
HDGFL3-203ENST00000563404 GRAPQ13588 217 aa21.94■■□□□ 1.1
HDGFL3-203ENST00000563404 HDGFL1Q5TGJ6 251 aa21.94■■□□□ 1.1
HDGFL3-203ENST00000563404 DPP8Q6V1X1 898 aaPredicted RBP21.94■■□□□ 1.1
HDGFL3-203ENST00000563404 SUPT20HQ8NEM7 779 aa21.94■■□□□ 1.1
HDGFL3-203ENST00000563404 GRAPLQ8TC17 118 aaPredicted RBP21.94■■□□□ 1.1
HDGFL3-203ENST00000563404 TMX4Q9H1E5 349 aaPredicted RBP21.94■■□□□ 1.1
HDGFL3-203ENST00000563404 GPRC5DQ9NZD1 345 aa21.94■■□□□ 1.1
HDGFL3-203ENST00000563404 TRAF5O00463 557 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms