RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 CWF19L2Q2TBE0 894 aaKnown RBP12.52□□□□□ -0.41
CLK3-208ENST00000562626 NUTM1Q86Y26 1132 aa12.52□□□□□ -0.41
CLK3-208ENST00000562626 KLHL34Q8N239 644 aa12.52□□□□□ -0.41
CLK3-208ENST00000562626 JARID2Q92833 1246 aaPredicted RBP12.52□□□□□ -0.41
CLK3-208ENST00000562626 SETDB2Q96T68 719 aa12.52□□□□□ -0.41
CLK3-208ENST00000562626 METTL22Q9BUU2 404 aaPredicted RBP12.52□□□□□ -0.41
CLK3-208ENST00000562626 ERFEQ4G0M1 354 aa12.51□□□□□ -0.41
CLK3-208ENST00000562626 C3orf67Q6ZVT6 689 aa12.51□□□□□ -0.41
CLK3-208ENST00000562626 NOB1Q9ULX3 412 aaKnown RBP12.51□□□□□ -0.41
CLK3-208ENST00000562626 SBF1O95248 1867 aa12.51□□□□□ -0.41
CLK3-208ENST00000562626 DDX58O95786 925 aaKnown RBP12.5□□□□□ -0.41
CLK3-208ENST00000562626 BRPF1P55201 1214 aaPredicted RBP12.5□□□□□ -0.41
CLK3-208ENST00000562626 NBPF5PQ86XG9 351 aaPredicted RBP12.5□□□□□ -0.41
CLK3-208ENST00000562626 DNAAF4Q8WXU2 420 aa12.5□□□□□ -0.41
CLK3-208ENST00000562626 CHMP4AQ9BY43 222 aa12.5□□□□□ -0.41
CLK3-208ENST00000562626 IBTKQ9P2D0 1353 aaPredicted RBP12.5□□□□□ -0.41
CLK3-208ENST00000562626 FER1L6Q2WGJ9 1857 aa12.49□□□□□ -0.41
CLK3-208ENST00000562626 NEURL1BA8MQ27 555 aa12.49□□□□□ -0.41
CLK3-208ENST00000562626 SLC34A2O95436 690 aa12.49□□□□□ -0.41
CLK3-208ENST00000562626 RTL5Q5HYW3 569 aaPredicted RBP12.49□□□□□ -0.41
CLK3-208ENST00000562626 BEND3Q5T5X7 828 aa12.49□□□□□ -0.41
CLK3-208ENST00000562626 CNBD1Q8NA66 436 aa12.49□□□□□ -0.41
CLK3-208ENST00000562626 SYT17Q9BSW7 474 aa12.49□□□□□ -0.41
CLK3-208ENST00000562626 CEP350Q5VT06 3117 aa12.48□□□□□ -0.41
CLK3-208ENST00000562626 LRRC37AA6NMS7 1700 aa12.48□□□□□ -0.41
CLK3-208ENST00000562626 PTPRCP08575 1304 aa12.48□□□□□ -0.41
CLK3-208ENST00000562626 CHRNA5P30532 468 aa12.48□□□□□ -0.41
CLK3-208ENST00000562626 HSP90AB3PQ58FF7 597 aa12.48□□□□□ -0.41
CLK3-208ENST00000562626 WWC3Q9ULE0 1092 aa12.48□□□□□ -0.41
CLK3-208ENST00000562626 CHD4Q14839 1912 aa12.48□□□□□ -0.41
CLK3-208ENST00000562626 RIC1Q4ADV7 1423 aa12.47□□□□□ -0.41
CLK3-208ENST00000562626 A0A0G2JLW4 131 aa12.47□□□□□ -0.41
CLK3-208ENST00000562626 TRIM27P14373 513 aa12.47□□□□□ -0.41
CLK3-208ENST00000562626 DPEP1P16444 411 aa12.47□□□□□ -0.41
CLK3-208ENST00000562626 KCNA3P22001 575 aa12.47□□□□□ -0.41
CLK3-208ENST00000562626 TRIM28Q13263 835 aaKnown RBP12.47□□□□□ -0.41
CLK3-208ENST00000562626 PARP10Q53GL7 1025 aa12.47□□□□□ -0.41
CLK3-208ENST00000562626 SLC4A10Q6U841 1118 aa12.47□□□□□ -0.41
CLK3-208ENST00000562626 SLC51AQ86UW1 340 aa12.47□□□□□ -0.41
CLK3-208ENST00000562626 FAM89AQ96GI7 184 aa12.47□□□□□ -0.41
CLK3-208ENST00000562626 UTP14AQ9BVJ6 771 aaKnown RBP12.47□□□□□ -0.41
CLK3-208ENST00000562626 RCAN3Q9UKA8 241 aa12.47□□□□□ -0.41
CLK3-208ENST00000562626 ABCC4O15439 1325 aa12.46□□□□□ -0.41
CLK3-208ENST00000562626 PLIN1O60240 522 aa12.46□□□□□ -0.41
CLK3-208ENST00000562626 RLBP1P12271 317 aa12.46□□□□□ -0.41
CLK3-208ENST00000562626 HCLS1P14317 486 aaPredicted RBP12.46□□□□□ -0.41
CLK3-208ENST00000562626 CASP7P55210 303 aa12.46□□□□□ -0.41
CLK3-208ENST00000562626 GCKRQ14397 625 aa12.46□□□□□ -0.41
CLK3-208ENST00000562626 FRAT1Q92837 279 aaPredicted RBP12.46□□□□□ -0.41
CLK3-208ENST00000562626 CWC25Q9NXE8 425 aaPredicted RBP12.46□□□□□ -0.41
CLK3-208ENST00000562626 TRMT112Q9UI30 125 aaKnown RBP12.46□□□□□ -0.41
CLK3-208ENST00000562626 CD2APQ9Y5K6 639 aa12.46□□□□□ -0.41
CLK3-208ENST00000562626 DICER1Q9UPY3 1922 aaKnown RBP12.45□□□□□ -0.42
CLK3-208ENST00000562626 KIF16BQ96L93 1317 aa12.45□□□□□ -0.42
CLK3-208ENST00000562626 TPTE2Q6XPS3 522 aa12.45□□□□□ -0.42
CLK3-208ENST00000562626 PPP1R42Q7Z4L9 355 aa12.45□□□□□ -0.42
CLK3-208ENST00000562626 CCDC191Q8NCU4 936 aa12.45□□□□□ -0.42
CLK3-208ENST00000562626 LINS1Q8NG48 757 aa12.45□□□□□ -0.42
CLK3-208ENST00000562626 CLUAP1Q96AJ1 413 aa12.45□□□□□ -0.42
CLK3-208ENST00000562626 LTBP1Q14766 1721 aa12.45□□□□□ -0.42
CLK3-208ENST00000562626 SH3TC1Q8TE82 1336 aa12.44□□□□□ -0.42
CLK3-208ENST00000562626 ST5P78524 1137 aa12.44□□□□□ -0.42
CLK3-208ENST00000562626 SLC10A5Q5PT55 438 aa12.44□□□□□ -0.42
CLK3-208ENST00000562626 UBE3BQ7Z3V4 1068 aa12.44□□□□□ -0.42
CLK3-208ENST00000562626 C2CD5Q86YS7 1000 aa12.44□□□□□ -0.42
CLK3-208ENST00000562626 BRIP1Q9BX63 1249 aa12.44□□□□□ -0.42
CLK3-208ENST00000562626 NYXQ9GZU5 481 aa12.44□□□□□ -0.42
CLK3-208ENST00000562626 GOLGB1Q14789 3259 aaKnown RBP12.43□□□□□ -0.42
CLK3-208ENST00000562626 KLRG2A4D1S0 409 aaPredicted RBP12.43□□□□□ -0.42
CLK3-208ENST00000562626 H7C1W4 665 aa12.43□□□□□ -0.42
CLK3-208ENST00000562626 CAPN15O75808 1086 aa12.43□□□□□ -0.42
CLK3-208ENST00000562626 PCCAP05165 728 aaPredicted RBP12.43□□□□□ -0.42
CLK3-208ENST00000562626 NEXNQ0ZGT2 675 aa12.43□□□□□ -0.42
CLK3-208ENST00000562626 ATF7IPQ6VMQ6 1270 aa12.43□□□□□ -0.42
CLK3-208ENST00000562626 ZBTB38Q8NAP3 1195 aaPredicted RBP12.43□□□□□ -0.42
CLK3-208ENST00000562626 ARHGAP45Q92619 1136 aa12.43□□□□□ -0.42
CLK3-208ENST00000562626 IRS4O14654 1257 aaPredicted RBP12.42□□□□□ -0.42
CLK3-208ENST00000562626 NPHP1O15259 732 aa12.42□□□□□ -0.42
CLK3-208ENST00000562626 ALDH1L1O75891 902 aa12.42□□□□□ -0.42
CLK3-208ENST00000562626 NBPF7P0C2Y1 421 aaPredicted RBP12.42□□□□□ -0.42
CLK3-208ENST00000562626 YBX3P16989 372 aaKnown RBP eCLIP12.42□□□□□ -0.429e-6■■■□□ 18.6
CLK3-208ENST00000562626 GTF2E1P29083 439 aaPredicted RBP12.42□□□□□ -0.42
CLK3-208ENST00000562626 CRY2Q49AN0 593 aa12.42□□□□□ -0.42
CLK3-208ENST00000562626 EPHA10Q5JZY3 1008 aa12.42□□□□□ -0.42
CLK3-208ENST00000562626 C20orf194Q5TEA3 1177 aa12.42□□□□□ -0.42
CLK3-208ENST00000562626 ZKSCAN2Q63HK3 967 aa12.42□□□□□ -0.42
CLK3-208ENST00000562626 TMEM57Q8N5G2 664 aa12.42□□□□□ -0.42
CLK3-208ENST00000562626 PANK1Q8TE04 598 aa12.42□□□□□ -0.42
CLK3-208ENST00000562626 KAZALD1Q96I82 304 aa12.42□□□□□ -0.42
CLK3-208ENST00000562626 API5Q9BZZ5 524 aaKnown RBP12.42□□□□□ -0.42
CLK3-208ENST00000562626 SRCIN1Q9C0H9 1055 aa12.42□□□□□ -0.42
CLK3-208ENST00000562626 RNF123Q5XPI4 1314 aa12.41□□□□□ -0.42
CLK3-208ENST00000562626 CDHR2Q9BYE9 1310 aa12.41□□□□□ -0.42
CLK3-208ENST00000562626 SRGNP10124 158 aa12.41□□□□□ -0.42
CLK3-208ENST00000562626 TGFB2P61812 414 aa12.41□□□□□ -0.42
CLK3-208ENST00000562626 USP44Q9H0E7 712 aa12.41□□□□□ -0.42
CLK3-208ENST00000562626 UTYO14607 1347 aa12.4□□□□□ -0.42
CLK3-208ENST00000562626 TIAM2Q8IVF5 1701 aa12.4□□□□□ -0.42
CLK3-208ENST00000562626 GRM8O00222 908 aa12.4□□□□□ -0.42
CLK3-208ENST00000562626 PDE6BP35913 854 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms