RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 PNMA8AQ86V59 439 aaPredicted RBP25.01■■□□□ 1.59
VPS35-202ENST00000561713 GPC2Q8N158 579 aa25.01■■□□□ 1.59
VPS35-202ENST00000561713 PSMD1Q99460 953 aa25.01■■□□□ 1.59
VPS35-202ENST00000561713 RIPK4P57078 832 aa25■■□□□ 1.59
VPS35-202ENST00000561713 TTLL7Q6ZT98 887 aa25■■□□□ 1.59
VPS35-202ENST00000561713 CNTROBQ8N137 903 aa25■■□□□ 1.59
VPS35-202ENST00000561713 NYXQ9GZU5 481 aa25■■□□□ 1.59
VPS35-202ENST00000561713 PNNQ9H307 717 aaKnown RBP25■■□□□ 1.59
VPS35-202ENST00000561713 TSPYL4Q9UJ04 414 aa25■■□□□ 1.59
VPS35-202ENST00000561713 ERVV-1B6SEH8 477 aa24.99■■□□□ 1.59
VPS35-202ENST00000561713 JDP2Q8WYK2 163 aa24.99■■□□□ 1.59
VPS35-202ENST00000561713 AIDAQ96BJ3 306 aa24.99■■□□□ 1.59
VPS35-202ENST00000561713 PRDM10Q9NQV6 1147 aa24.99■■□□□ 1.59
VPS35-202ENST00000561713 COL4A5P29400 1685 aa24.98■■□□□ 1.59
VPS35-202ENST00000561713 MAP3K15Q6ZN16 1313 aa24.98■■□□□ 1.59
VPS35-202ENST00000561713 SLC51AQ86UW1 340 aa24.98■■□□□ 1.59
VPS35-202ENST00000561713 GPTP24298 496 aa24.97■■□□□ 1.59
VPS35-202ENST00000561713 TMPOP42166 694 aaKnown RBP24.97■■□□□ 1.59
VPS35-202ENST00000561713 CTCFP49711 727 aaPredicted RBP24.97■■□□□ 1.59
VPS35-202ENST00000561713 ZBTB3Q9H5J0 574 aa24.97■■□□□ 1.59
VPS35-202ENST00000561713 WBP1LQ9NX94 342 aa24.97■■□□□ 1.59
VPS35-202ENST00000561713 GJA3Q9Y6H8 435 aa24.97■■□□□ 1.59
VPS35-202ENST00000561713 UBN2Q6ZU65 1347 aa24.96■■□□□ 1.59
VPS35-202ENST00000561713 NEUROD2Q15784 382 aa24.96■■□□□ 1.59
VPS35-202ENST00000561713 KIF6Q6ZMV9 814 aa24.96■■□□□ 1.59
VPS35-202ENST00000561713 RPGRQ92834 1020 aaKnown RBP24.96■■□□□ 1.59
VPS35-202ENST00000561713 RASSF10A6NK89 507 aa24.95■■□□□ 1.58
VPS35-202ENST00000561713 HOXA10P31260 410 aaPredicted RBP24.95■■□□□ 1.58
VPS35-202ENST00000561713 DEFB115Q30KQ5 88 aa24.95■■□□□ 1.58
VPS35-202ENST00000561713 CC2D2BQ6DHV5 1058 aa24.95■■□□□ 1.58
VPS35-202ENST00000561713 ANXA1P04083 346 aa24.94■■□□□ 1.58
VPS35-202ENST00000561713 EIF6P56537 245 aaKnown RBP24.94■■□□□ 1.58
VPS35-202ENST00000561713 SUSD4Q5VX71 490 aa24.94■■□□□ 1.58
VPS35-202ENST00000561713 LAMB2P55268 1798 aa24.94■■□□□ 1.58
VPS35-202ENST00000561713 LTBP1Q14766 1721 aa24.93■■□□□ 1.58
VPS35-202ENST00000561713 TCERG1O14776 1098 aaKnown RBP24.93■■□□□ 1.58
VPS35-202ENST00000561713 LBX1P52954 281 aa24.93■■□□□ 1.58
VPS35-202ENST00000561713 PROSER3Q2NL68 480 aa24.93■■□□□ 1.58
VPS35-202ENST00000561713 EIF2S2P20042 333 aaKnown RBP24.92■■□□□ 1.58
VPS35-202ENST00000561713 C3orf67Q6ZVT6 689 aa24.92■■□□□ 1.58
VPS35-202ENST00000561713 ZNF34Q8IZ26 560 aa24.92■■□□□ 1.58
VPS35-202ENST00000561713 LARGE2Q8N3Y3 721 aa24.92■■□□□ 1.58
VPS35-202ENST00000561713 NECTIN2Q92692 538 aa24.92■■□□□ 1.58
VPS35-202ENST00000561713 ABT1Q9ULW3 272 aaKnown RBP24.92■■□□□ 1.58
VPS35-202ENST00000561713 RIC1Q4ADV7 1423 aa24.92■■□□□ 1.58
VPS35-202ENST00000561713 IBTKQ9P2D0 1353 aaPredicted RBP24.92■■□□□ 1.58
VPS35-202ENST00000561713 WDR33Q9C0J8 1336 aaKnown RBP24.91■■□□□ 1.58
VPS35-202ENST00000561713 LMOD1P29536 600 aaPredicted RBP24.91■■□□□ 1.58
VPS35-202ENST00000561713 EPS15P42566 896 aa24.91■■□□□ 1.58
VPS35-202ENST00000561713 SCNN1DP51172 638 aa24.91■■□□□ 1.58
VPS35-202ENST00000561713 FMR1Q06787 632 aaKnown RBP eCLIP24.91■■□□□ 1.583e-7■□□□□ 8.4
VPS35-202ENST00000561713 WDR43Q15061 677 aaKnown RBP eCLIP24.91■■□□□ 1.58
VPS35-202ENST00000561713 KRT24Q2M2I5 525 aa24.91■■□□□ 1.58
VPS35-202ENST00000561713 RBM17Q96I25 401 aaKnown RBP24.91■■□□□ 1.58
VPS35-202ENST00000561713 DDX21Q9NR30 783 aaKnown RBP eCLIP24.91■■□□□ 1.58
VPS35-202ENST00000561713 PPEF1O14829 653 aaPredicted RBP24.9■■□□□ 1.58
VPS35-202ENST00000561713 NTSR2O95665 410 aa24.9■■□□□ 1.58
VPS35-202ENST00000561713 LMOD3Q0VAK6 560 aa24.9■■□□□ 1.58
VPS35-202ENST00000561713 CRAMP1Q96RY5 1269 aa24.9■■□□□ 1.58
VPS35-202ENST00000561713 GRIPAP1Q4V328 841 aa24.89■■□□□ 1.58
VPS35-202ENST00000561713 ERBB4Q15303 1308 aa24.88■■□□□ 1.57
VPS35-202ENST00000561713 GIGYF2Q6Y7W6 1299 aaKnown RBP24.88■■□□□ 1.57
VPS35-202ENST00000561713 LRP10Q7Z4F1 713 aa24.88■■□□□ 1.57
VPS35-202ENST00000561713 LAS1LQ9Y4W2 734 aaKnown RBP24.88■■□□□ 1.57
VPS35-202ENST00000561713 HSPA8P11142 646 aaKnown RBP24.87■■□□□ 1.57
VPS35-202ENST00000561713 PDIA6Q15084 440 aa24.87■■□□□ 1.57
VPS35-202ENST00000561713 TRIM35Q9UPQ4 493 aa24.87■■□□□ 1.57
VPS35-202ENST00000561713 RUNDC1Q96C34 613 aa24.86■■□□□ 1.57
VPS35-202ENST00000561713 PRKRIP1Q9H875 184 aaPredicted RBP24.86■■□□□ 1.57
VPS35-202ENST00000561713 ADAMTS8Q9UP79 889 aa24.86■■□□□ 1.57
VPS35-202ENST00000561713 MAP2K1Q02750 393 aaPredicted RBP24.85■■□□□ 1.57
VPS35-202ENST00000561713 USP50Q70EL3 339 aaPredicted RBP24.85■■□□□ 1.57
VPS35-202ENST00000561713 PPP1R42Q7Z4L9 355 aa24.85■■□□□ 1.57
VPS35-202ENST00000561713 NIM1KQ8IY84 436 aa24.85■■□□□ 1.57
VPS35-202ENST00000561713 TAF1P21675 1872 aa24.84■■□□□ 1.57
VPS35-202ENST00000561713 TRAF5O00463 557 aa24.84■■□□□ 1.57
VPS35-202ENST00000561713 PPIP5K2O43314 1243 aa24.84■■□□□ 1.57
VPS35-202ENST00000561713 AOC3Q16853 763 aa24.84■■□□□ 1.57
VPS35-202ENST00000561713 NLRP3Q96P20 1036 aa24.84■■□□□ 1.57
VPS35-202ENST00000561713 PARP10Q53GL7 1025 aa24.83■■□□□ 1.57
VPS35-202ENST00000561713 CST9Q5W186 159 aa24.83■■□□□ 1.57
VPS35-202ENST00000561713 PAXIP1Q6ZW49 1069 aaPredicted RBP24.83■■□□□ 1.57
VPS35-202ENST00000561713 ATP6V0A2Q9Y487 856 aa24.83■■□□□ 1.57
VPS35-202ENST00000561713 AIMP1Q12904 312 aaKnown RBP24.82■■□□□ 1.56
VPS35-202ENST00000561713 GRM1Q13255 1194 aa24.82■■□□□ 1.56
VPS35-202ENST00000561713 ZNF428Q96B54 188 aa24.82■■□□□ 1.56
VPS35-202ENST00000561713 CAPNS2Q96L46 248 aa24.82■■□□□ 1.56
VPS35-202ENST00000561713 DDX60Q8IY21 1712 aaKnown RBP24.81■■□□□ 1.56
VPS35-202ENST00000561713 SLC10A5Q5PT55 438 aa24.81■■□□□ 1.56
VPS35-202ENST00000561713 CYP4F22Q6NT55 531 aa24.81■■□□□ 1.56
VPS35-202ENST00000561713 XAGE3Q8WTP9 111 aa24.81■■□□□ 1.56
VPS35-202ENST00000561713 UTP14AQ9BVJ6 771 aaKnown RBP24.81■■□□□ 1.56
VPS35-202ENST00000561713 BABAM1Q9NWV8 329 aa24.81■■□□□ 1.56
VPS35-202ENST00000561713 ABCC4O15439 1325 aa24.81■■□□□ 1.56
VPS35-202ENST00000561713 TMX4Q9H1E5 349 aaPredicted RBP24.8■■□□□ 1.56
VPS35-202ENST00000561713 GPRC5DQ9NZD1 345 aa24.8■■□□□ 1.56
VPS35-202ENST00000561713 CHL1O00533 1208 aa24.79■■□□□ 1.56
VPS35-202ENST00000561713 CXCL9Q07325 125 aa24.79■■□□□ 1.56
VPS35-202ENST00000561713 ABHD8Q96I13 439 aa24.79■■□□□ 1.56
VPS35-202ENST00000561713 GPR101Q96P66 508 aaPredicted RBP24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms