RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 U2AF1Q01081 240 aaKnown RBP eCLIP24.71■■□□□ 1.556e-9■■■■□ 21.7
TPM1-226ENST00000560959 USP50Q70EL3 339 aaPredicted RBP24.71■■□□□ 1.55
TPM1-226ENST00000560959 RIC1Q4ADV7 1423 aa24.7■■□□□ 1.55
TPM1-226ENST00000560959 SCNN1DP51172 638 aa24.69■■□□□ 1.54
TPM1-226ENST00000560959 CNGB1Q14028 1251 aaPredicted RBP24.69■■□□□ 1.54
TPM1-226ENST00000560959 CRAMP1Q96RY5 1269 aa24.69■■□□□ 1.54
TPM1-226ENST00000560959 GJA3Q9Y6H8 435 aa24.69■■□□□ 1.54
TPM1-226ENST00000560959 IBTKQ9P2D0 1353 aaPredicted RBP24.68■■□□□ 1.54
TPM1-226ENST00000560959 DCTN1Q14203 1278 aa24.68■■□□□ 1.54
TPM1-226ENST00000560959 PNISRQ8TF01 805 aaKnown RBP24.68■■□□□ 1.54
TPM1-226ENST00000560959 RPGRQ92834 1020 aaKnown RBP24.68■■□□□ 1.54
TPM1-226ENST00000560959 VPS33BQ9H267 617 aa24.68■■□□□ 1.54
TPM1-226ENST00000560959 MAP3K15Q6ZN16 1313 aa24.67■■□□□ 1.54
TPM1-226ENST00000560959 EPS15P42566 896 aa24.67■■□□□ 1.54
TPM1-226ENST00000560959 NUTM1Q86Y26 1132 aa24.67■■□□□ 1.54
TPM1-226ENST00000560959 LARGE2Q8N3Y3 721 aa24.67■■□□□ 1.54
TPM1-226ENST00000560959 CAPNS2Q96L46 248 aa24.67■■□□□ 1.54
TPM1-226ENST00000560959 BEGAINQ9BUH8 593 aa24.67■■□□□ 1.54
TPM1-226ENST00000560959 ABCC12Q96J65 1359 aa24.67■■□□□ 1.54
TPM1-226ENST00000560959 RBM17Q96I25 401 aaKnown RBP24.66■■□□□ 1.54
TPM1-226ENST00000560959 GPR101Q96P66 508 aaPredicted RBP24.66■■□□□ 1.54
TPM1-226ENST00000560959 SLC34A2O95436 690 aa24.65■■□□□ 1.54
TPM1-226ENST00000560959 CST9Q5W186 159 aa24.65■■□□□ 1.54
TPM1-226ENST00000560959 MAP2K2P36507 400 aa24.64■■□□□ 1.54
TPM1-226ENST00000560959 KIF6Q6ZMV9 814 aa24.64■■□□□ 1.54
TPM1-226ENST00000560959 TLL2Q9Y6L7 1015 aa24.64■■□□□ 1.54
TPM1-226ENST00000560959 RGS19P49795 217 aa24.63■■□□□ 1.53
TPM1-226ENST00000560959 COL4A5P29400 1685 aa24.62■■□□□ 1.53
TPM1-226ENST00000560959 PPP2R1AP30153 589 aa24.62■■□□□ 1.53
TPM1-226ENST00000560959 NIM1KQ8IY84 436 aa24.62■■□□□ 1.53
TPM1-226ENST00000560959 ZNF34Q8IZ26 560 aa24.62■■□□□ 1.53
TPM1-226ENST00000560959 NGEFQ8N5V2 710 aa24.62■■□□□ 1.53
TPM1-226ENST00000560959 ADARB2Q9NS39 739 aaKnown RBP24.62■■□□□ 1.53
TPM1-226ENST00000560959 MIS18AQ9NYP9 233 aa24.62■■□□□ 1.53
TPM1-226ENST00000560959 PPEF1O14829 653 aaPredicted RBP24.61■■□□□ 1.53
TPM1-226ENST00000560959 SUSD4Q5VX71 490 aa24.61■■□□□ 1.53
TPM1-226ENST00000560959 CYP4F22Q6NT55 531 aa24.61■■□□□ 1.53
TPM1-226ENST00000560959 TTLL7Q6ZT98 887 aa24.61■■□□□ 1.53
TPM1-226ENST00000560959 HHIPL1Q96JK4 782 aa24.61■■□□□ 1.53
TPM1-226ENST00000560959 TMX4Q9H1E5 349 aaPredicted RBP24.61■■□□□ 1.53
TPM1-226ENST00000560959 LTBP1Q14766 1721 aa24.61■■□□□ 1.53
TPM1-226ENST00000560959 THSD7BQ9C0I4 1608 aa24.61■■□□□ 1.53
TPM1-226ENST00000560959 UBN2Q6ZU65 1347 aa24.61■■□□□ 1.53
TPM1-226ENST00000560959 EIF4A1P60842 406 aaKnown RBP24.6■■□□□ 1.53
TPM1-226ENST00000560959 FMR1Q06787 632 aaKnown RBP eCLIP24.6■■□□□ 1.53
TPM1-226ENST00000560959 FAM161AQ3B820 660 aa24.6■■□□□ 1.53
TPM1-226ENST00000560959 PAXIP1Q6ZW49 1069 aaPredicted RBP24.6■■□□□ 1.53
TPM1-226ENST00000560959 GPRC5DQ9NZD1 345 aa24.6■■□□□ 1.53
TPM1-226ENST00000560959 RRP7AQ9Y3A4 280 aaKnown RBP24.6■■□□□ 1.53
TPM1-226ENST00000560959 CA12O43570 354 aa24.59■■□□□ 1.53
TPM1-226ENST00000560959 GIGYF2Q6Y7W6 1299 aaKnown RBP24.59■■□□□ 1.53
TPM1-226ENST00000560959 PPP1R42Q7Z4L9 355 aa24.59■■□□□ 1.53
TPM1-226ENST00000560959 PGAP2Q9UHJ9 254 aa24.59■■□□□ 1.53
TPM1-226ENST00000560959 PPIP5K2O43314 1243 aa24.58■■□□□ 1.53
TPM1-226ENST00000560959 NTSR2O95665 410 aa24.58■■□□□ 1.53
TPM1-226ENST00000560959 PARP10Q53GL7 1025 aa24.58■■□□□ 1.53
TPM1-226ENST00000560959 SUPT20HQ8NEM7 779 aa24.58■■□□□ 1.53
TPM1-226ENST00000560959 NLRP3Q96P20 1036 aa24.58■■□□□ 1.53
TPM1-226ENST00000560959 ATP6V0A2Q9Y487 856 aa24.58■■□□□ 1.53
TPM1-226ENST00000560959 ERBB4Q15303 1308 aa24.58■■□□□ 1.52
TPM1-226ENST00000560959 TRAF5O00463 557 aa24.57■■□□□ 1.52
TPM1-226ENST00000560959 NEFMP07197 916 aa24.57■■□□□ 1.52
TPM1-226ENST00000560959 GPTP24298 496 aa24.57■■□□□ 1.52
TPM1-226ENST00000560959 SLC10A5Q5PT55 438 aa24.57■■□□□ 1.52
TPM1-226ENST00000560959 SAPCD2Q86UD0 394 aa24.57■■□□□ 1.52
TPM1-226ENST00000560959 RTFDC1Q9BY42 306 aaPredicted RBP24.57■■□□□ 1.52
TPM1-226ENST00000560959 ZNRF3Q9ULT6 936 aa24.57■■□□□ 1.52
TPM1-226ENST00000560959 MLLT1Q03111 559 aaPredicted RBP24.56■■□□□ 1.52
TPM1-226ENST00000560959 ZC3H15Q8WU90 426 aaKnown RBP24.56■■□□□ 1.52
TPM1-226ENST00000560959 ZBTB3Q9H5J0 574 aa24.56■■□□□ 1.52
TPM1-226ENST00000560959 LAMB4A4D0S4 1761 aa24.56■■□□□ 1.52
TPM1-226ENST00000560959 NUP98P52948 1817 aa24.56■■□□□ 1.52
TPM1-226ENST00000560959 CCDC85CA6NKD9 419 aa24.55■■□□□ 1.52
TPM1-226ENST00000560959 MYL6BP14649 208 aa24.55■■□□□ 1.52
TPM1-226ENST00000560959 CXCL9Q07325 125 aa24.55■■□□□ 1.52
TPM1-226ENST00000560959 CDHR2Q9BYE9 1310 aa24.55■■□□□ 1.52
TPM1-226ENST00000560959 AOC3Q16853 763 aa24.54■■□□□ 1.52
TPM1-226ENST00000560959 TCERG1O14776 1098 aaKnown RBP24.53■■□□□ 1.52
TPM1-226ENST00000560959 BBOX1O75936 387 aa24.53■■□□□ 1.52
TPM1-226ENST00000560959 GRM1Q13255 1194 aa24.53■■□□□ 1.52
TPM1-226ENST00000560959 C3orf67Q6ZVT6 689 aa24.53■■□□□ 1.52
TPM1-226ENST00000560959 TRPM7Q96QT4 1865 aa24.52■■□□□ 1.52
TPM1-226ENST00000560959 AOC2O75106 756 aa24.52■■□□□ 1.52
TPM1-226ENST00000560959 CELF2O95319 508 aaKnown RBP24.52■■□□□ 1.52
TPM1-226ENST00000560959 BRPF1P55201 1214 aaPredicted RBP24.52■■□□□ 1.52
TPM1-226ENST00000560959 UTP14AQ9BVJ6 771 aaKnown RBP24.52■■□□□ 1.52
TPM1-226ENST00000560959 SP8Q8IXZ3 490 aa24.51■■□□□ 1.51
TPM1-226ENST00000560959 GMPSP49915 693 aaPredicted RBP24.5■■□□□ 1.51
TPM1-226ENST00000560959 TNIP1Q15025 636 aa24.5■■□□□ 1.51
TPM1-226ENST00000560959 CIAPIN1Q6FI81 312 aa24.5■■□□□ 1.51
TPM1-226ENST00000560959 LRP10Q7Z4F1 713 aa24.5■■□□□ 1.51
TPM1-226ENST00000560959 SLC51AQ86UW1 340 aa24.5■■□□□ 1.51
TPM1-226ENST00000560959 PLEKHF1Q96S99 279 aa24.5■■□□□ 1.51
TPM1-226ENST00000560959 KIAA2012Q0VF49 1180 aa24.49■■□□□ 1.51
TPM1-226ENST00000560959 NFE2L2Q16236 605 aa24.49■■□□□ 1.51
TPM1-226ENST00000560959 DPP8Q6V1X1 898 aaPredicted RBP24.49■■□□□ 1.51
TPM1-226ENST00000560959 CDC37L1Q7L3B6 337 aa24.49■■□□□ 1.51
TPM1-226ENST00000560959 ABCC4O15439 1325 aa24.49■■□□□ 1.51
TPM1-226ENST00000560959 KDM3BQ7LBC6 1761 aa24.49■■□□□ 1.51
TPM1-226ENST00000560959 MPNDQ8N594 471 aa24.48■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms