RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 BABAM1Q9NWV8 329 aa13.51□□□□□ -0.25
CUX1-218ENST00000560541 CACNA1FO60840 1977 aa13.51□□□□□ -0.25
CUX1-218ENST00000560541 FERMT3Q86UX7 667 aa13.51□□□□□ -0.25
CUX1-218ENST00000560541 FAM227BQ96M60 508 aa13.51□□□□□ -0.25
CUX1-218ENST00000560541 FAM173BQ6P4H8 233 aa13.51□□□□□ -0.25
CUX1-218ENST00000560541 TMEM87AQ8NBN3 555 aa13.51□□□□□ -0.25
CUX1-218ENST00000560541 ECHDC1Q9NTX5 307 aa13.51□□□□□ -0.25
CUX1-218ENST00000560541 CEMIPQ8WUJ3 1361 aa13.5□□□□□ -0.25
CUX1-218ENST00000560541 APPP05067 770 aa13.5□□□□□ -0.25
CUX1-218ENST00000560541 AIMP1Q12904 312 aaKnown RBP13.5□□□□□ -0.25
CUX1-218ENST00000560541 HSP90AB4PQ58FF6 505 aa13.5□□□□□ -0.25
CUX1-218ENST00000560541 SIL1Q9H173 461 aa13.5□□□□□ -0.25
CUX1-218ENST00000560541 MTMR6Q9Y217 621 aa13.5□□□□□ -0.25
CUX1-218ENST00000560541 EPB41L2O43491 1005 aaKnown RBP13.5□□□□□ -0.25
CUX1-218ENST00000560541 ME3Q16798 604 aa13.5□□□□□ -0.25
CUX1-218ENST00000560541 CCDC8Q9H0W5 538 aaPredicted RBP13.5□□□□□ -0.25
CUX1-218ENST00000560541 ST3GAL1Q11201 340 aa13.49□□□□□ -0.25
CUX1-218ENST00000560541 TAF3Q5VWG9 929 aa13.49□□□□□ -0.25
CUX1-218ENST00000560541 TRIM34Q9BYJ4 488 aa13.49□□□□□ -0.25
CUX1-218ENST00000560541 CYP46A1Q9Y6A2 500 aa13.49□□□□□ -0.25
CUX1-218ENST00000560541 TTC41PQ6P2S7 1318 aa13.49□□□□□ -0.25
CUX1-218ENST00000560541 ZNF710Q8N1W2 664 aa13.49□□□□□ -0.25
CUX1-218ENST00000560541 FAM184AQ8NB25 1140 aa13.49□□□□□ -0.25
CUX1-218ENST00000560541 RUFY2Q8WXA3 655 aa13.49□□□□□ -0.25
CUX1-218ENST00000560541 KLHDC4Q8TBB5 520 aa13.48□□□□□ -0.25
CUX1-218ENST00000560541 IP6K1Q92551 441 aa13.48□□□□□ -0.25
CUX1-218ENST00000560541 HDAC5Q9UQL6 1122 aa13.48□□□□□ -0.25
CUX1-218ENST00000560541 TLR7Q9NYK1 1049 aaKnown RBP13.48□□□□□ -0.25
CUX1-218ENST00000560541 PHF8Q9UPP1 1060 aa13.48□□□□□ -0.25
CUX1-218ENST00000560541 ATP6V1DQ9Y5K8 247 aa13.48□□□□□ -0.25
CUX1-218ENST00000560541 RBM8AQ9Y5S9 174 aaKnown RBP13.48□□□□□ -0.25
CUX1-218ENST00000560541 LMOD2Q6P5Q4 547 aa13.48□□□□□ -0.25
CUX1-218ENST00000560541 DBF4Q9UBU7 674 aaPredicted RBP13.48□□□□□ -0.25
CUX1-218ENST00000560541 TPCN1Q9ULQ1 816 aa13.48□□□□□ -0.25
CUX1-218ENST00000560541 TAF6LQ9Y6J9 622 aa13.48□□□□□ -0.25
CUX1-218ENST00000560541 NMIQ13287 307 aaPredicted RBP13.47□□□□□ -0.25
CUX1-218ENST00000560541 VPS53Q5VIR6 699 aa13.47□□□□□ -0.25
CUX1-218ENST00000560541 BOLA2Q9H3K6 86 aa13.47□□□□□ -0.25
CUX1-218ENST00000560541 CCDC171Q6TFL3 1326 aa13.47□□□□□ -0.25
CUX1-218ENST00000560541 CAMK4Q16566 473 aa13.47□□□□□ -0.25
CUX1-218ENST00000560541 SPC24Q8NBT2 197 aa13.47□□□□□ -0.25
CUX1-218ENST00000560541 EAF2Q96CJ1 260 aaPredicted RBP13.47□□□□□ -0.25
CUX1-218ENST00000560541 GPATCH3Q96I76 525 aa13.47□□□□□ -0.25
CUX1-218ENST00000560541 ZSWIM6Q9HCJ5 1215 aa13.47□□□□□ -0.25
CUX1-218ENST00000560541 AP5Z1O43299 807 aa13.46□□□□□ -0.25
CUX1-218ENST00000560541 ZKSCAN1P17029 563 aaPredicted RBP13.46□□□□□ -0.25
CUX1-218ENST00000560541 CREB3L3Q68CJ9 461 aa13.46□□□□□ -0.25
CUX1-218ENST00000560541 N4BP2Q86UW6 1770 aaPredicted RBP13.46□□□□□ -0.25
CUX1-218ENST00000560541 STK3Q13188 491 aa13.46□□□□□ -0.25
CUX1-218ENST00000560541 UVSSAQ2YD98 709 aa13.46□□□□□ -0.25
CUX1-218ENST00000560541 CDC37L1Q7L3B6 337 aa13.46□□□□□ -0.25
CUX1-218ENST00000560541 THEMISQ8N1K5 641 aaPredicted RBP13.46□□□□□ -0.25
CUX1-218ENST00000560541 SUCLG2Q96I99 432 aa13.46□□□□□ -0.25
CUX1-218ENST00000560541 BICC1Q9H694 974 aaKnown RBP13.46□□□□□ -0.25
CUX1-218ENST00000560541 MARF1Q9Y4F3 1742 aaKnown RBP13.46□□□□□ -0.25
CUX1-218ENST00000560541 USP42Q9H9J4 1324 aaKnown RBP13.46□□□□□ -0.25
CUX1-218ENST00000560541 KDM4AO75164 1064 aa13.46□□□□□ -0.26
CUX1-218ENST00000560541 PSME1Q06323 249 aa13.46□□□□□ -0.26
CUX1-218ENST00000560541 NOLC1Q14978 699 aaKnown RBP eCLIP13.46□□□□□ -0.267e-6■■■□□ 16.5
CUX1-218ENST00000560541 NECTIN1Q15223 517 aa13.46□□□□□ -0.26
CUX1-218ENST00000560541 ESCO1Q5FWF5 840 aa13.46□□□□□ -0.26
CUX1-218ENST00000560541 LARP1BQ659C4 914 aaKnown RBP13.46□□□□□ -0.26
CUX1-218ENST00000560541 EVI5LQ96CN4 794 aa13.46□□□□□ -0.26
CUX1-218ENST00000560541 EDC3Q96F86 508 aaKnown RBP13.46□□□□□ -0.26
CUX1-218ENST00000560541 A0A0D9SFI3 127 aa13.45□□□□□ -0.26
CUX1-218ENST00000560541 SASH1O94885 1247 aa13.45□□□□□ -0.26
CUX1-218ENST00000560541 HOXB7P09629 217 aa13.45□□□□□ -0.26
CUX1-218ENST00000560541 AKAP4Q5JQC9 854 aa13.45□□□□□ -0.26
CUX1-218ENST00000560541 C1orf141Q5JVX7 400 aa13.45□□□□□ -0.26
CUX1-218ENST00000560541 GIGYF1O75420 1035 aaPredicted RBP13.45□□□□□ -0.26
CUX1-218ENST00000560541 U2AF2P26368 475 aaKnown RBP eCLIP13.45□□□□□ -0.261e-7■■■■■ 27.9
CUX1-218ENST00000560541 KSR2Q6VAB6 950 aa13.45□□□□□ -0.26
CUX1-218ENST00000560541 PIBF1Q8WXW3 757 aa13.45□□□□□ -0.26
CUX1-218ENST00000560541 FSD1Q9BTV5 496 aa13.45□□□□□ -0.26
CUX1-218ENST00000560541 MTX1Q13505 466 aa13.44□□□□□ -0.26
CUX1-218ENST00000560541 TTC6Q86TZ1 520 aa13.44□□□□□ -0.26
CUX1-218ENST00000560541 KAZALD1Q96I82 304 aa13.44□□□□□ -0.26
CUX1-218ENST00000560541 G3BP1Q13283 466 aaKnown RBP eCLIP13.44□□□□□ -0.26
CUX1-218ENST00000560541 PLEKHO1Q53GL0 409 aaPredicted RBP13.44□□□□□ -0.26
CUX1-218ENST00000560541 DNAJC2Q99543 621 aaKnown RBP13.44□□□□□ -0.26
CUX1-218ENST00000560541 FUCA2Q9BTY2 467 aa13.44□□□□□ -0.26
CUX1-218ENST00000560541 SH2B1Q9NRF2 756 aaPredicted RBP13.44□□□□□ -0.26
CUX1-218ENST00000560541 NDUFB9Q9Y6M9 179 aa13.44□□□□□ -0.26
CUX1-218ENST00000560541 PXDNQ92626 1479 aa13.44□□□□□ -0.26
CUX1-218ENST00000560541 SLC27A2O14975 620 aa13.44□□□□□ -0.26
CUX1-218ENST00000560541 RNMTO43148 476 aaKnown RBP13.44□□□□□ -0.26
CUX1-218ENST00000560541 ZSCAN31Q96LW9 406 aaPredicted RBP13.44□□□□□ -0.26
CUX1-218ENST00000560541 TFIP11Q9UBB9 837 aaKnown RBP13.44□□□□□ -0.26
CUX1-218ENST00000560541 ANKARQ7Z5J8 1434 aa13.43□□□□□ -0.26
CUX1-218ENST00000560541 LTN1O94822 1766 aa13.43□□□□□ -0.26
CUX1-218ENST00000560541 PATL2C9JE40 543 aaKnown RBP13.43□□□□□ -0.26
CUX1-218ENST00000560541 GRM8O00222 908 aa13.43□□□□□ -0.26
CUX1-218ENST00000560541 PRR29P0C7W0 189 aa13.43□□□□□ -0.26
CUX1-218ENST00000560541 LIG1P18858 919 aa13.43□□□□□ -0.26
CUX1-218ENST00000560541 ERC1Q8IUD2 1116 aa13.43□□□□□ -0.26
CUX1-218ENST00000560541 KIF13AQ9H1H9 1805 aa13.43□□□□□ -0.26
CUX1-218ENST00000560541 MYL6BP14649 208 aa13.43□□□□□ -0.26
CUX1-218ENST00000560541 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.43□□□□□ -0.26
CUX1-218ENST00000560541 ZNF589Q86UQ0 364 aaPredicted RBP13.43□□□□□ -0.26
CUX1-218ENST00000560541 CKAP2LQ8IYA6 745 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms