RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 RGL2O15211 777 aa10.96□□□□□ -0.65
CCDC88C-214ENST00000557507 SCNN1DP51172 638 aa10.96□□□□□ -0.65
CCDC88C-214ENST00000557507 CRY2Q49AN0 593 aa10.96□□□□□ -0.65
CCDC88C-214ENST00000557507 NUTM1Q86Y26 1132 aa10.96□□□□□ -0.65
CCDC88C-214ENST00000557507 PSMD1Q99460 953 aa10.96□□□□□ -0.65
CCDC88C-214ENST00000557507 DDX21Q9NR30 783 aaKnown RBP eCLIP10.96□□□□□ -0.65
CCDC88C-214ENST00000557507 ALDH1B1P30837 517 aa10.95□□□□□ -0.66
CCDC88C-214ENST00000557507 EPS15P42566 896 aa10.95□□□□□ -0.66
CCDC88C-214ENST00000557507 MAP2K1Q02750 393 aaPredicted RBP10.95□□□□□ -0.66
CCDC88C-214ENST00000557507 DCTN1Q14203 1278 aa10.95□□□□□ -0.66
CCDC88C-214ENST00000557507 CYP4F22Q6NT55 531 aa10.95□□□□□ -0.66
CCDC88C-214ENST00000557507 CAPNS2Q96L46 248 aa10.95□□□□□ -0.66
CCDC88C-214ENST00000557507 GJA3Q9Y6H8 435 aa10.95□□□□□ -0.66
CCDC88C-214ENST00000557507 LRRC37AA6NMS7 1700 aa10.95□□□□□ -0.66
CCDC88C-214ENST00000557507 TRAF5O00463 557 aa10.94□□□□□ -0.66
CCDC88C-214ENST00000557507 EIF6P56537 245 aaKnown RBP10.94□□□□□ -0.66
CCDC88C-214ENST00000557507 JDP2Q8WYK2 163 aa10.94□□□□□ -0.66
CCDC88C-214ENST00000557507 DDX60Q8IY21 1712 aaKnown RBP10.94□□□□□ -0.66
CCDC88C-214ENST00000557507 IBTKQ9P2D0 1353 aaPredicted RBP10.93□□□□□ -0.66
CCDC88C-214ENST00000557507 UBN2Q6ZU65 1347 aa10.93□□□□□ -0.66
CCDC88C-214ENST00000557507 GTF2E1P29083 439 aaPredicted RBP10.93□□□□□ -0.66
CCDC88C-214ENST00000557507 LMOD1P29536 600 aaPredicted RBP10.93□□□□□ -0.66
CCDC88C-214ENST00000557507 GRM1Q13255 1194 aa10.93□□□□□ -0.66
CCDC88C-214ENST00000557507 CST9Q5W186 159 aa10.93□□□□□ -0.66
CCDC88C-214ENST00000557507 PAXIP1Q6ZW49 1069 aaPredicted RBP10.93□□□□□ -0.66
CCDC88C-214ENST00000557507 TSKSQ9UJT2 592 aa10.93□□□□□ -0.66
CCDC88C-214ENST00000557507 DUOX1Q9NRD9 1551 aa10.92□□□□□ -0.66
CCDC88C-214ENST00000557507 TNRC18O15417 2968 aaPredicted RBP10.92□□□□□ -0.66
CCDC88C-214ENST00000557507 HOXA10P31260 410 aaPredicted RBP10.92□□□□□ -0.66
CCDC88C-214ENST00000557507 C3orf67Q6ZVT6 689 aa10.92□□□□□ -0.66
CCDC88C-214ENST00000557507 LARGE2Q8N3Y3 721 aa10.92□□□□□ -0.66
CCDC88C-214ENST00000557507 RTF1Q92541 710 aaKnown RBP10.92□□□□□ -0.66
CCDC88C-214ENST00000557507 TLL2Q9Y6L7 1015 aa10.92□□□□□ -0.66
CCDC88C-214ENST00000557507 MAP3K15Q6ZN16 1313 aa10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 SCN9AQ15858 1988 aa10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 CCDC85CA6NKD9 419 aa10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 AOC2O75106 756 aa10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 U2AF1L5P0DN76 240 aaPredicted RBP10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 GPTP24298 496 aa10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 ECE1P42892 770 aa10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 U2AF1Q01081 240 aaKnown RBP eCLIP10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 CC2D2BQ6DHV5 1058 aa10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 TTLL7Q6ZT98 887 aa10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 PIAS4Q8N2W9 510 aaPredicted RBP10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 NGEFQ8N5V2 710 aa10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 RPGRQ92834 1020 aaKnown RBP10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 GPR101Q96P66 508 aaPredicted RBP10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 NYXQ9GZU5 481 aa10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 MIS18AQ9NYP9 233 aa10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 PSME4Q14997 1843 aa10.91□□□□□ -0.66
CCDC88C-214ENST00000557507 TCERG1O14776 1098 aaKnown RBP10.9□□□□□ -0.66
CCDC88C-214ENST00000557507 PPEF1O14829 653 aaPredicted RBP10.9□□□□□ -0.66
CCDC88C-214ENST00000557507 NTSR2O95665 410 aa10.9□□□□□ -0.66
CCDC88C-214ENST00000557507 USP50Q70EL3 339 aaPredicted RBP10.9□□□□□ -0.66
CCDC88C-214ENST00000557507 NIM1KQ8IY84 436 aa10.9□□□□□ -0.66
CCDC88C-214ENST00000557507 CFAP53Q96M91 514 aa10.9□□□□□ -0.66
CCDC88C-214ENST00000557507 ZBTB3Q9H5J0 574 aa10.9□□□□□ -0.66
CCDC88C-214ENST00000557507 COL4A1P02462 1669 aa10.89□□□□□ -0.67
CCDC88C-214ENST00000557507 ERVV-1B6SEH8 477 aa10.89□□□□□ -0.67
CCDC88C-214ENST00000557507 PPIP5K2O43314 1243 aa10.89□□□□□ -0.67
CCDC88C-214ENST00000557507 RGS19P49795 217 aa10.89□□□□□ -0.67
CCDC88C-214ENST00000557507 MLLT1Q03111 559 aaPredicted RBP10.89□□□□□ -0.67
CCDC88C-214ENST00000557507 AOC3Q16853 763 aa10.89□□□□□ -0.67
CCDC88C-214ENST00000557507 SUSD4Q5VX71 490 aa10.89□□□□□ -0.67
CCDC88C-214ENST00000557507 CCER1Q8TC90 406 aaPredicted RBP10.89□□□□□ -0.67
CCDC88C-214ENST00000557507 CRAMP1Q96RY5 1269 aa10.89□□□□□ -0.67
CCDC88C-214ENST00000557507 BEGAINQ9BUH8 593 aa10.89□□□□□ -0.67
CCDC88C-214ENST00000557507 GPRC5DQ9NZD1 345 aa10.89□□□□□ -0.67
CCDC88C-214ENST00000557507 HTATSF1O43719 755 aaKnown RBP10.88□□□□□ -0.67
CCDC88C-214ENST00000557507 MYL6BP14649 208 aa10.88□□□□□ -0.67
CCDC88C-214ENST00000557507 TAF7Q15545 349 aaPredicted RBP10.88□□□□□ -0.67
CCDC88C-214ENST00000557507 KIF6Q6ZMV9 814 aa10.88□□□□□ -0.67
CCDC88C-214ENST00000557507 SAPCD2Q86UD0 394 aa10.88□□□□□ -0.67
CCDC88C-214ENST00000557507 RBM17Q96I25 401 aaKnown RBP10.88□□□□□ -0.67
CCDC88C-214ENST00000557507 GLIS2Q9BZE0 524 aaPredicted RBP10.88□□□□□ -0.67
CCDC88C-214ENST00000557507 ADARB2Q9NS39 739 aaKnown RBP10.88□□□□□ -0.67
CCDC88C-214ENST00000557507 NUDCQ9Y266 331 aa10.88□□□□□ -0.67
CCDC88C-214ENST00000557507 RRP7AQ9Y3A4 280 aaKnown RBP10.88□□□□□ -0.67
CCDC88C-214ENST00000557507 ABCC4O15439 1325 aa10.87□□□□□ -0.67
CCDC88C-214ENST00000557507 CELF2O95319 508 aaKnown RBP10.87□□□□□ -0.67
CCDC88C-214ENST00000557507 PPP2R1AP30153 589 aa10.87□□□□□ -0.67
CCDC88C-214ENST00000557507 MAP2K2P36507 400 aa10.87□□□□□ -0.67
CCDC88C-214ENST00000557507 GMPSP49915 693 aaPredicted RBP10.87□□□□□ -0.67
CCDC88C-214ENST00000557507 CXCL9Q07325 125 aa10.87□□□□□ -0.67
CCDC88C-214ENST00000557507 GRIPAP1Q4V328 841 aa10.87□□□□□ -0.67
CCDC88C-214ENST00000557507 ZNF34Q8IZ26 560 aa10.87□□□□□ -0.67
CCDC88C-214ENST00000557507 MCOLN1Q9GZU1 580 aa10.87□□□□□ -0.67
CCDC88C-214ENST00000557507 EIF4A1P60842 406 aaKnown RBP10.86□□□□□ -0.67
CCDC88C-214ENST00000557507 POTEDQ86YR6 584 aa10.86□□□□□ -0.67
CCDC88C-214ENST00000557507 TRPM4Q8TD43 1214 aa10.86□□□□□ -0.67
CCDC88C-214ENST00000557507 THUMPD2Q9BTF0 503 aaKnown RBP10.86□□□□□ -0.67
CCDC88C-214ENST00000557507 SHTN1A0MZ66 631 aa10.85□□□□□ -0.67
CCDC88C-214ENST00000557507 HIRAP54198 1017 aaPredicted RBP10.85□□□□□ -0.67
CCDC88C-214ENST00000557507 BRPF1P55201 1214 aaPredicted RBP10.85□□□□□ -0.67
CCDC88C-214ENST00000557507 GIGYF2Q6Y7W6 1299 aaKnown RBP10.85□□□□□ -0.67
CCDC88C-214ENST00000557507 LRP10Q7Z4F1 713 aa10.85□□□□□ -0.67
CCDC88C-214ENST00000557507 ZIC5Q96T25 663 aa10.85□□□□□ -0.67
CCDC88C-214ENST00000557507 RTFDC1Q9BY42 306 aaPredicted RBP10.85□□□□□ -0.67
CCDC88C-214ENST00000557507 ZNF408Q9H9D4 720 aa10.85□□□□□ -0.67
CCDC88C-214ENST00000557507 ZNRF3Q9ULT6 936 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms