RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 LMNB1P20700 586 aa9.52□□□□□ -0.89
SCFD1-222ENST00000556768 C16orf71Q8IYS4 520 aaPredicted RBP9.52□□□□□ -0.89
SCFD1-222ENST00000556768 MAP3K15Q6ZN16 1313 aa9.52□□□□□ -0.89
SCFD1-222ENST00000556768 KDM2BQ8NHM5 1336 aa9.52□□□□□ -0.89
SCFD1-222ENST00000556768 SENP3-EIF4A1A0A087X0R7 540 aa9.52□□□□□ -0.89
SCFD1-222ENST00000556768 CHL1O00533 1208 aa9.52□□□□□ -0.89
SCFD1-222ENST00000556768 SRGNP10124 158 aa9.52□□□□□ -0.89
SCFD1-222ENST00000556768 ALDH1B1P30837 517 aa9.52□□□□□ -0.89
SCFD1-222ENST00000556768 STYK1Q6J9G0 422 aa9.52□□□□□ -0.89
SCFD1-222ENST00000556768 APAF1O14727 1248 aa9.51□□□□□ -0.89
SCFD1-222ENST00000556768 C21orf2O43822 256 aa9.51□□□□□ -0.89
SCFD1-222ENST00000556768 NPR1P16066 1061 aa9.51□□□□□ -0.89
SCFD1-222ENST00000556768 E2F4Q16254 413 aa9.51□□□□□ -0.89
SCFD1-222ENST00000556768 HLFQ16534 295 aa9.51□□□□□ -0.89
SCFD1-222ENST00000556768 PPP1R42Q7Z4L9 355 aa9.51□□□□□ -0.89
SCFD1-222ENST00000556768 TMX4Q9H1E5 349 aaPredicted RBP9.51□□□□□ -0.89
SCFD1-222ENST00000556768 ZBTB3Q9H5J0 574 aa9.51□□□□□ -0.89
SCFD1-222ENST00000556768 TRIM35Q9UPQ4 493 aa9.51□□□□□ -0.89
SCFD1-222ENST00000556768 SEMA3EO15041 775 aa9.5□□□□□ -0.89
SCFD1-222ENST00000556768 HOXB7P09629 217 aa9.5□□□□□ -0.89
SCFD1-222ENST00000556768 GNAI1P63096 354 aa9.5□□□□□ -0.89
SCFD1-222ENST00000556768 PARP10Q53GL7 1025 aa9.5□□□□□ -0.89
SCFD1-222ENST00000556768 HSP90AB3PQ58FF7 597 aa9.5□□□□□ -0.89
SCFD1-222ENST00000556768 DPY19L2Q6NUT2 758 aa9.5□□□□□ -0.89
SCFD1-222ENST00000556768 TTLL7Q6ZT98 887 aa9.5□□□□□ -0.89
SCFD1-222ENST00000556768 CHD4Q14839 1912 aa9.5□□□□□ -0.89
SCFD1-222ENST00000556768 UBR2Q8IWV8 1755 aa9.5□□□□□ -0.89
SCFD1-222ENST00000556768 ZC3H4Q9UPT8 1303 aaKnown RBP9.5□□□□□ -0.89
SCFD1-222ENST00000556768 ADCY9O60503 1353 aa9.5□□□□□ -0.89
SCFD1-222ENST00000556768 GPTP24298 496 aa9.49□□□□□ -0.89
SCFD1-222ENST00000556768 AIMP1Q12904 312 aaKnown RBP9.49□□□□□ -0.89
SCFD1-222ENST00000556768 HDGFL1Q5TGJ6 251 aa9.49□□□□□ -0.89
SCFD1-222ENST00000556768 PRPF40BQ6NWY9 871 aaKnown RBP9.49□□□□□ -0.89
SCFD1-222ENST00000556768 GIGYF2Q6Y7W6 1299 aaKnown RBP9.49□□□□□ -0.89
SCFD1-222ENST00000556768 REM2Q8IYK8 340 aaPredicted RBP9.49□□□□□ -0.89
SCFD1-222ENST00000556768 NECTIN2Q92692 538 aa9.49□□□□□ -0.89
SCFD1-222ENST00000556768 TOMM70O94826 608 aa9.49□□□□□ -0.89
SCFD1-222ENST00000556768 COPS6Q7L5N1 327 aa9.49□□□□□ -0.89
SCFD1-222ENST00000556768 RPGRQ92834 1020 aaKnown RBP9.49□□□□□ -0.89
SCFD1-222ENST00000556768 TAOK3Q9H2K8 898 aa9.49□□□□□ -0.89
SCFD1-222ENST00000556768 MRS2Q9HD23 443 aa9.49□□□□□ -0.89
SCFD1-222ENST00000556768 DDX21Q9NR30 783 aaKnown RBP eCLIP9.49□□□□□ -0.89
SCFD1-222ENST00000556768 DBF4Q9UBU7 674 aaPredicted RBP9.49□□□□□ -0.89
SCFD1-222ENST00000556768 KLRG2A4D1S0 409 aaPredicted RBP9.48□□□□□ -0.89
SCFD1-222ENST00000556768 ERFEQ4G0M1 354 aa9.48□□□□□ -0.89
SCFD1-222ENST00000556768 RTKN2Q8IZC4 609 aa9.48□□□□□ -0.89
SCFD1-222ENST00000556768 NLRP3Q96P20 1036 aa9.48□□□□□ -0.89
SCFD1-222ENST00000556768 IFT57Q9NWB7 429 aa9.48□□□□□ -0.89
SCFD1-222ENST00000556768 RASSF7Q02833 373 aa9.47□□□□□ -0.89
SCFD1-222ENST00000556768 PDIA6Q15084 440 aa9.47□□□□□ -0.89
SCFD1-222ENST00000556768 CCDC93Q567U6 631 aa9.47□□□□□ -0.89
SCFD1-222ENST00000556768 NUTM1Q86Y26 1132 aa9.47□□□□□ -0.89
SCFD1-222ENST00000556768 UTP14AQ9BVJ6 771 aaKnown RBP9.47□□□□□ -0.89
SCFD1-222ENST00000556768 HYPKQ9NX55 129 aa9.47□□□□□ -0.89
SCFD1-222ENST00000556768 DUSP27Q5VZP5 1158 aa9.47□□□□□ -0.89
SCFD1-222ENST00000556768 ANKRD13DQ6ZTN6 518 aa9.47□□□□□ -0.89
SCFD1-222ENST00000556768 ZNF34Q8IZ26 560 aa9.47□□□□□ -0.89
SCFD1-222ENST00000556768 XAGE3Q8WTP9 111 aa9.47□□□□□ -0.89
SCFD1-222ENST00000556768 RBM17Q96I25 401 aaKnown RBP9.47□□□□□ -0.89
SCFD1-222ENST00000556768 MBIPQ9NS73 344 aa9.47□□□□□ -0.89
SCFD1-222ENST00000556768 SIPA1L3O60292 1781 aaPredicted RBP9.46□□□□□ -0.89
SCFD1-222ENST00000556768 GLTPD2A6NH11 291 aa9.46□□□□□ -0.9
SCFD1-222ENST00000556768 NFKBIEO00221 500 aa9.46□□□□□ -0.9
SCFD1-222ENST00000556768 KIF3CO14782 793 aa9.46□□□□□ -0.9
SCFD1-222ENST00000556768 ZMYND10O75800 440 aa9.46□□□□□ -0.9
SCFD1-222ENST00000556768 PPP1R37O75864 691 aa9.46□□□□□ -0.9
SCFD1-222ENST00000556768 ANXA1P04083 346 aa9.46□□□□□ -0.9
SCFD1-222ENST00000556768 VEGFAP15692 232 aaPredicted RBP9.46□□□□□ -0.9
SCFD1-222ENST00000556768 GRIPAP1Q4V328 841 aa9.46□□□□□ -0.9
SCFD1-222ENST00000556768 SUSD4Q5VX71 490 aa9.46□□□□□ -0.9
SCFD1-222ENST00000556768 CC2D2BQ6DHV5 1058 aa9.46□□□□□ -0.9
SCFD1-222ENST00000556768 RRAGCQ9HB90 399 aa9.46□□□□□ -0.9
SCFD1-222ENST00000556768 NMRK2Q9NPI5 230 aa9.46□□□□□ -0.9
SCFD1-222ENST00000556768 CHPF2Q9P2E5 772 aa9.46□□□□□ -0.9
SCFD1-222ENST00000556768 KIF13BQ9NQT8 1826 aa9.46□□□□□ -0.9
SCFD1-222ENST00000556768 TCIRG1Q13488 830 aa9.45□□□□□ -0.9
SCFD1-222ENST00000556768 KRT24Q2M2I5 525 aa9.45□□□□□ -0.9
SCFD1-222ENST00000556768 PROSER3Q2NL68 480 aa9.45□□□□□ -0.9
SCFD1-222ENST00000556768 TRMT112Q9UI30 125 aaKnown RBP9.45□□□□□ -0.9
SCFD1-222ENST00000556768 PCDHB8Q9UN66 801 aa9.45□□□□□ -0.9
SCFD1-222ENST00000556768 PCDHB13Q9Y5F0 798 aa9.45□□□□□ -0.9
SCFD1-222ENST00000556768 RNF123Q5XPI4 1314 aa9.45□□□□□ -0.9
SCFD1-222ENST00000556768 LTBP3Q9NS15 1303 aa9.45□□□□□ -0.9
SCFD1-222ENST00000556768 N4BP2Q86UW6 1770 aaPredicted RBP9.45□□□□□ -0.9
SCFD1-222ENST00000556768 ELL2O00472 640 aaPredicted RBP9.45□□□□□ -0.9
SCFD1-222ENST00000556768 HSP90B1P14625 803 aaKnown RBP9.45□□□□□ -0.9
SCFD1-222ENST00000556768 HSPA6P17066 643 aa9.45□□□□□ -0.9
SCFD1-222ENST00000556768 GOLGA2Q08379 1002 aa9.45□□□□□ -0.9
SCFD1-222ENST00000556768 CRY2Q49AN0 593 aa9.45□□□□□ -0.9
SCFD1-222ENST00000556768 CCDC30Q5VVM6 783 aa9.45□□□□□ -0.9
SCFD1-222ENST00000556768 PLBD2Q8NHP8 589 aa9.45□□□□□ -0.9
SCFD1-222ENST00000556768 IBTKQ9P2D0 1353 aaPredicted RBP9.44□□□□□ -0.9
SCFD1-222ENST00000556768 UBN2Q6ZU65 1347 aa9.44□□□□□ -0.9
SCFD1-222ENST00000556768 DDX58O95786 925 aaKnown RBP9.44□□□□□ -0.9
SCFD1-222ENST00000556768 ZNF853P0CG23 659 aa9.44□□□□□ -0.9
SCFD1-222ENST00000556768 HOXA10P31260 410 aaPredicted RBP9.44□□□□□ -0.9
SCFD1-222ENST00000556768 FKBP4Q02790 459 aaKnown RBP eCLIP9.44□□□□□ -0.9
SCFD1-222ENST00000556768 CCDC27Q2M243 656 aa9.44□□□□□ -0.9
SCFD1-222ENST00000556768 LRP10Q7Z4F1 713 aa9.44□□□□□ -0.9
SCFD1-222ENST00000556768 RIC3Q7Z5B4 369 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms