RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 TBC1D9BQ66K14 1250 aa12.51□□□□□ -0.41
SRP54-210ENST00000556380 CLEC4GQ6UXB4 293 aa12.51□□□□□ -0.41
SRP54-210ENST00000556380 NECTIN2Q92692 538 aa12.51□□□□□ -0.41
SRP54-210ENST00000556380 DDX21Q9NR30 783 aaKnown RBP eCLIP12.51□□□□□ -0.41
SRP54-210ENST00000556380 FANCIQ9NVI1 1328 aa12.51□□□□□ -0.41
SRP54-210ENST00000556380 LAMB4A4D0S4 1761 aa12.51□□□□□ -0.41
SRP54-210ENST00000556380 ERVV-1B6SEH8 477 aa12.5□□□□□ -0.41
SRP54-210ENST00000556380 ELL2O00472 640 aaPredicted RBP12.5□□□□□ -0.41
SRP54-210ENST00000556380 HLFQ16534 295 aa12.5□□□□□ -0.41
SRP54-210ENST00000556380 HDGFL1Q5TGJ6 251 aa12.5□□□□□ -0.41
SRP54-210ENST00000556380 NLGN2Q8NFZ4 835 aa12.5□□□□□ -0.41
SRP54-210ENST00000556380 CHPF2Q9P2E5 772 aa12.5□□□□□ -0.41
SRP54-210ENST00000556380 PARP3Q9Y6F1 533 aa12.5□□□□□ -0.41
SRP54-210ENST00000556380 MAP3K15Q6ZN16 1313 aa12.49□□□□□ -0.41
SRP54-210ENST00000556380 NPM2Q86SE8 214 aaKnown RBP12.49□□□□□ -0.41
SRP54-210ENST00000556380 SERPINB2P05120 415 aa12.48□□□□□ -0.41
SRP54-210ENST00000556380 COPS6Q7L5N1 327 aa12.48□□□□□ -0.41
SRP54-210ENST00000556380 TRMT2AQ8IZ69 625 aaKnown RBP12.48□□□□□ -0.41
SRP54-210ENST00000556380 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.48□□□□□ -0.41
SRP54-210ENST00000556380 DBF4Q9UBU7 674 aaPredicted RBP12.48□□□□□ -0.41
SRP54-210ENST00000556380 C10orf71Q711Q0 1435 aa12.47□□□□□ -0.41
SRP54-210ENST00000556380 VAMP4O75379 141 aa12.47□□□□□ -0.41
SRP54-210ENST00000556380 EXOSC9Q06265 439 aaKnown RBP12.47□□□□□ -0.41
SRP54-210ENST00000556380 SLFN5Q08AF3 891 aa12.47□□□□□ -0.41
SRP54-210ENST00000556380 TWISTNBQ3B726 338 aaPredicted RBP12.47□□□□□ -0.41
SRP54-210ENST00000556380 BICDL1Q6ZP65 573 aa12.47□□□□□ -0.41
SRP54-210ENST00000556380 XAGE3Q8WTP9 111 aa12.47□□□□□ -0.41
SRP54-210ENST00000556380 SETDB2Q96T68 719 aa12.47□□□□□ -0.41
SRP54-210ENST00000556380 MYH16Q9H6N6 1097 aa12.47□□□□□ -0.41
SRP54-210ENST00000556380 HYPKQ9NX55 129 aa12.47□□□□□ -0.41
SRP54-210ENST00000556380 GOLGB1Q14789 3259 aaKnown RBP12.46□□□□□ -0.41
SRP54-210ENST00000556380 SCN7AQ01118 1682 aa12.46□□□□□ -0.41
SRP54-210ENST00000556380 CCDC30Q5VVM6 783 aa12.46□□□□□ -0.41
SRP54-210ENST00000556380 KIF6Q6ZMV9 814 aa12.46□□□□□ -0.41
SRP54-210ENST00000556380 ZNF34Q8IZ26 560 aa12.46□□□□□ -0.41
SRP54-210ENST00000556380 L3MBTL3Q96JM7 780 aaPredicted RBP12.46□□□□□ -0.41
SRP54-210ENST00000556380 CHMP4AQ9BY43 222 aa12.46□□□□□ -0.41
SRP54-210ENST00000556380 ZBTB3Q9H5J0 574 aa12.46□□□□□ -0.41
SRP54-210ENST00000556380 ZNF652Q9Y2D9 606 aa12.46□□□□□ -0.41
SRP54-210ENST00000556380 E9PSI1 815 aa12.45□□□□□ -0.42
SRP54-210ENST00000556380 KCNA3P22001 575 aa12.45□□□□□ -0.42
SRP54-210ENST00000556380 TGFB2P61812 414 aa12.45□□□□□ -0.42
SRP54-210ENST00000556380 GIGYF2Q6Y7W6 1299 aaKnown RBP12.45□□□□□ -0.42
SRP54-210ENST00000556380 RNF25Q96BH1 459 aaPredicted RBP12.45□□□□□ -0.42
SRP54-210ENST00000556380 CDCA7LQ96GN5 454 aa12.45□□□□□ -0.42
SRP54-210ENST00000556380 PLSCR2Q9NRY7 297 aa12.45□□□□□ -0.42
SRP54-210ENST00000556380 UTRNP46939 3433 aa12.45□□□□□ -0.42
SRP54-210ENST00000556380 CARMIL3Q8ND23 1372 aa12.44□□□□□ -0.42
SRP54-210ENST00000556380 BCORQ6W2J9 1755 aa12.44□□□□□ -0.42
SRP54-210ENST00000556380 AIMP1Q12904 312 aaKnown RBP12.44□□□□□ -0.42
SRP54-210ENST00000556380 PRR5LQ6MZQ0 368 aa12.44□□□□□ -0.42
SRP54-210ENST00000556380 DPY19L2Q6NUT2 758 aa12.44□□□□□ -0.42
SRP54-210ENST00000556380 ANKRD13DQ6ZTN6 518 aa12.44□□□□□ -0.42
SRP54-210ENST00000556380 PHAXQ9H814 394 aaKnown RBP12.44□□□□□ -0.42
SRP54-210ENST00000556380 NIP7Q9Y221 180 aaKnown RBP eCLIP12.44□□□□□ -0.42
SRP54-210ENST00000556380 ATP10DQ9P241 1426 aa12.44□□□□□ -0.42
SRP54-210ENST00000556380 UBN2Q6ZU65 1347 aa12.43□□□□□ -0.42
SRP54-210ENST00000556380 NRXN2Q9P2S2 1712 aa12.43□□□□□ -0.42
SRP54-210ENST00000556380 PXDNLA1KZ92 1463 aa12.43□□□□□ -0.42
SRP54-210ENST00000556380 A0A0G2JLW4 131 aa12.43□□□□□ -0.42
SRP54-210ENST00000556380 RIOK3O14730 519 aaKnown RBP12.43□□□□□ -0.42
SRP54-210ENST00000556380 TCERG1O14776 1098 aaKnown RBP12.43□□□□□ -0.42
SRP54-210ENST00000556380 DPEP1P16444 411 aa12.43□□□□□ -0.42
SRP54-210ENST00000556380 PLBD2Q8NHP8 589 aa12.43□□□□□ -0.42
SRP54-210ENST00000556380 KIF13BQ9NQT8 1826 aa12.42□□□□□ -0.42
SRP54-210ENST00000556380 TCIRG1Q13488 830 aa12.42□□□□□ -0.42
SRP54-210ENST00000556380 G2E3Q7L622 706 aa12.42□□□□□ -0.42
SRP54-210ENST00000556380 BRIP1Q9BX63 1249 aa12.42□□□□□ -0.42
SRP54-210ENST00000556380 KLRG2A4D1S0 409 aaPredicted RBP12.41□□□□□ -0.42
SRP54-210ENST00000556380 GPTP24298 496 aa12.41□□□□□ -0.42
SRP54-210ENST00000556380 SUSD4Q5VX71 490 aa12.41□□□□□ -0.42
SRP54-210ENST00000556380 TPTE2Q6XPS3 522 aa12.41□□□□□ -0.42
SRP54-210ENST00000556380 NBPF5PQ86XG9 351 aaPredicted RBP12.41□□□□□ -0.42
SRP54-210ENST00000556380 CCDC24Q8N4L8 307 aa12.41□□□□□ -0.42
SRP54-210ENST00000556380 CNBD1Q8NA66 436 aa12.41□□□□□ -0.42
SRP54-210ENST00000556380 ISCA1Q9BUE6 129 aa12.41□□□□□ -0.42
SRP54-210ENST00000556380 AFDNP55196 1824 aaKnown RBP12.41□□□□□ -0.42
SRP54-210ENST00000556380 KIAA1551Q9HCM1 1747 aa12.4□□□□□ -0.42
SRP54-210ENST00000556380 NTSR2O95665 410 aa12.4□□□□□ -0.42
SRP54-210ENST00000556380 YBX3P16989 372 aaKnown RBP eCLIP12.4□□□□□ -0.42
SRP54-210ENST00000556380 CHRNA5P30532 468 aa12.4□□□□□ -0.42
SRP54-210ENST00000556380 TRIM28Q13263 835 aaKnown RBP12.4□□□□□ -0.42
SRP54-210ENST00000556380 PARP10Q53GL7 1025 aa12.4□□□□□ -0.42
SRP54-210ENST00000556380 HSP90AB3PQ58FF7 597 aa12.4□□□□□ -0.42
SRP54-210ENST00000556380 C3orf67Q6ZVT6 689 aa12.4□□□□□ -0.42
SRP54-210ENST00000556380 NLRP10Q86W26 655 aa12.4□□□□□ -0.42
SRP54-210ENST00000556380 EFCAB3Q8N7B9 438 aa12.4□□□□□ -0.42
SRP54-210ENST00000556380 STK31Q9BXU1 1019 aa12.4□□□□□ -0.42
SRP54-210ENST00000556380 IBTKQ9P2D0 1353 aaPredicted RBP12.4□□□□□ -0.42
SRP54-210ENST00000556380 NUP98P52948 1817 aa12.39□□□□□ -0.43
SRP54-210ENST00000556380 HNRNPUQ00839 825 aaKnown RBP eCLIP12.39□□□□□ -0.43
SRP54-210ENST00000556380 FAM177BA6PVY3 158 aa12.38□□□□□ -0.43
SRP54-210ENST00000556380 ST18O60284 1047 aa12.38□□□□□ -0.43
SRP54-210ENST00000556380 PDE6BP35913 854 aa12.38□□□□□ -0.43
SRP54-210ENST00000556380 GPR162Q16538 588 aa12.38□□□□□ -0.43
SRP54-210ENST00000556380 ERFEQ4G0M1 354 aa12.38□□□□□ -0.43
SRP54-210ENST00000556380 SLC10A5Q5PT55 438 aa12.38□□□□□ -0.43
SRP54-210ENST00000556380 KSR2Q6VAB6 950 aa12.38□□□□□ -0.43
SRP54-210ENST00000556380 NYXQ9GZU5 481 aa12.38□□□□□ -0.43
SRP54-210ENST00000556380 PDZRN3Q9UPQ7 1066 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms