RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 NUTM2BA6NNL0 878 aaPredicted RBP17.58■□□□□ 0.41
CUX1-215ENST00000556210 NUTM2EB1AL46 878 aaPredicted RBP17.58■□□□□ 0.41
CUX1-215ENST00000556210 NUTM2AQ8IVF1 878 aaPredicted RBP17.58■□□□□ 0.41
CUX1-215ENST00000556210 DIP2CQ9Y2E4 1556 aa17.58■□□□□ 0.41
CUX1-215ENST00000556210 FRMPD1Q5SYB0 1578 aa17.58■□□□□ 0.4
CUX1-215ENST00000556210 CCDC158Q5M9N0 1113 aa17.58■□□□□ 0.4
CUX1-215ENST00000556210 CREB3L3Q68CJ9 461 aa17.58■□□□□ 0.4
CUX1-215ENST00000556210 LRSAM1Q6UWE0 723 aa17.58■□□□□ 0.4
CUX1-215ENST00000556210 CCDC144CPQ8IYA2 1237 aa17.58■□□□□ 0.4
CUX1-215ENST00000556210 MTERF4Q7Z6M4 381 aaKnown RBP17.58■□□□□ 0.4
CUX1-215ENST00000556210 PTCH1Q13635 1447 aa17.58■□□□□ 0.4
CUX1-215ENST00000556210 MROH1Q8NDA8 1641 aa17.57■□□□□ 0.4
CUX1-215ENST00000556210 SIRT1Q96EB6 747 aa17.57■□□□□ 0.4
CUX1-215ENST00000556210 DDX21Q9NR30 783 aaKnown RBP eCLIP17.57■□□□□ 0.4
CUX1-215ENST00000556210 NUP62CLQ9H1M0 184 aa17.57■□□□□ 0.4
CUX1-215ENST00000556210 ARHGEF10O15013 1369 aa17.57■□□□□ 0.4
CUX1-215ENST00000556210 CD163L1Q9NR16 1453 aa17.57■□□□□ 0.4
CUX1-215ENST00000556210 C17orf53Q8N3J3 647 aaPredicted RBP17.57■□□□□ 0.4
CUX1-215ENST00000556210 IL25Q9H293 177 aa17.57■□□□□ 0.4
CUX1-215ENST00000556210 PIK3C2BO00750 1634 aa17.57■□□□□ 0.4
CUX1-215ENST00000556210 CDK12Q9NYV4 1490 aaPredicted RBP17.57■□□□□ 0.4
CUX1-215ENST00000556210 FILIP1Q7Z7B0 1213 aa17.56■□□□□ 0.4
CUX1-215ENST00000556210 ADCY5O95622 1261 aa17.56■□□□□ 0.4
CUX1-215ENST00000556210 CCDC192P0DO97 292 aa17.56■□□□□ 0.4
CUX1-215ENST00000556210 ISM2Q6H9L7 571 aa17.56■□□□□ 0.4
CUX1-215ENST00000556210 SYNE3Q6ZMZ3 975 aa17.56■□□□□ 0.4
CUX1-215ENST00000556210 ZSCAN31Q96LW9 406 aaPredicted RBP17.56■□□□□ 0.4
CUX1-215ENST00000556210 ZKSCAN5Q9Y2L8 839 aa17.56■□□□□ 0.4
CUX1-215ENST00000556210 SLFNL1Q499Z3 407 aa17.56■□□□□ 0.4
CUX1-215ENST00000556210 KIF6Q6ZMV9 814 aa17.56■□□□□ 0.4
CUX1-215ENST00000556210 CPSF1Q10570 1443 aaKnown RBP17.55■□□□□ 0.4
CUX1-215ENST00000556210 ANAPC15P60006 121 aa17.55■□□□□ 0.4
CUX1-215ENST00000556210 METTL24Q5JXM2 366 aa17.55■□□□□ 0.4
CUX1-215ENST00000556210 BICDL1Q6ZP65 573 aa17.55■□□□□ 0.4
CUX1-215ENST00000556210 HELBQ8NG08 1087 aaPredicted RBP17.55■□□□□ 0.4
CUX1-215ENST00000556210 POLR3DP05423 398 aaPredicted RBP17.55■□□□□ 0.4
CUX1-215ENST00000556210 IBTKQ9P2D0 1353 aaPredicted RBP17.55■□□□□ 0.4
CUX1-215ENST00000556210 ALDH1L1O75891 902 aa17.55■□□□□ 0.4
CUX1-215ENST00000556210 CCDC183Q5T5S1 534 aa17.55■□□□□ 0.4
CUX1-215ENST00000556210 PIBF1Q8WXW3 757 aa17.55■□□□□ 0.4
CUX1-215ENST00000556210 NEK1Q96PY6 1258 aa17.55■□□□□ 0.4
CUX1-215ENST00000556210 IQSEC3Q9UPP2 1182 aaPredicted RBP17.55■□□□□ 0.4
CUX1-215ENST00000556210 VWDEQ8N2E2 1590 aa17.55■□□□□ 0.4
CUX1-215ENST00000556210 ADAMTS2O95450 1211 aa17.54■□□□□ 0.4
CUX1-215ENST00000556210 F13A1P00488 732 aa17.54■□□□□ 0.4
CUX1-215ENST00000556210 PODXL2Q9NZ53 605 aa17.54■□□□□ 0.4
CUX1-215ENST00000556210 MYOM1P52179 1685 aa17.54■□□□□ 0.4
CUX1-215ENST00000556210 MYO3AQ8NEV4 1616 aa17.54■□□□□ 0.4
CUX1-215ENST00000556210 A0A0D9SFI3 127 aa17.54■□□□□ 0.4
CUX1-215ENST00000556210 KINO60870 393 aaKnown RBP17.54■□□□□ 0.4
CUX1-215ENST00000556210 FAM89AQ96GI7 184 aa17.54■□□□□ 0.4
CUX1-215ENST00000556210 ANKRD1Q15327 319 aa17.53■□□□□ 0.4
CUX1-215ENST00000556210 VPS37DQ86XT2 251 aa17.53■□□□□ 0.4
CUX1-215ENST00000556210 HSPA4P34932 840 aa17.53■□□□□ 0.4
CUX1-215ENST00000556210 Q6ZUG5 572 aa17.53■□□□□ 0.4
CUX1-215ENST00000556210 PPP1R9BQ96SB3 815 aa17.53■□□□□ 0.4
CUX1-215ENST00000556210 TMOD3Q9NYL9 352 aa17.53■□□□□ 0.4
CUX1-215ENST00000556210 CFAP74Q9C0B2 1584 aa17.53■□□□□ 0.4
CUX1-215ENST00000556210 CCDC171Q6TFL3 1326 aa17.53■□□□□ 0.4
CUX1-215ENST00000556210 CHGBP05060 677 aa17.53■□□□□ 0.4
CUX1-215ENST00000556210 STK38Q15208 465 aa17.53■□□□□ 0.4
CUX1-215ENST00000556210 C19orf44Q9H6X5 657 aa17.53■□□□□ 0.4
CUX1-215ENST00000556210 LARGE1O95461 756 aa17.52■□□□□ 0.4
CUX1-215ENST00000556210 RUFY3Q7L099 469 aa17.52■□□□□ 0.4
CUX1-215ENST00000556210 RAD50Q92878 1312 aa17.52■□□□□ 0.4
CUX1-215ENST00000556210 ZNF445P59923 1031 aa17.52■□□□□ 0.4
CUX1-215ENST00000556210 NCOA5Q9HCD5 579 aaKnown RBP17.52■□□□□ 0.4
CUX1-215ENST00000556210 DACT1Q9NYF0 836 aa17.52■□□□□ 0.4
CUX1-215ENST00000556210 BIN1O00499 593 aa17.52■□□□□ 0.39
CUX1-215ENST00000556210 MAP3K11Q16584 847 aa17.52■□□□□ 0.39
CUX1-215ENST00000556210 NOL7Q9UMY1 257 aaKnown RBP17.52■□□□□ 0.39
CUX1-215ENST00000556210 PLEKHG1Q9ULL1 1385 aa17.51■□□□□ 0.39
CUX1-215ENST00000556210 JAK2O60674 1132 aa17.51■□□□□ 0.39
CUX1-215ENST00000556210 LDHAL6AQ6ZMR3 332 aa17.51■□□□□ 0.39
CUX1-215ENST00000556210 SH2B1Q9NRF2 756 aaPredicted RBP17.51■□□□□ 0.39
CUX1-215ENST00000556210 CWC25Q9NXE8 425 aaPredicted RBP17.51■□□□□ 0.39
CUX1-215ENST00000556210 ABCF2Q9UG63 623 aa17.51■□□□□ 0.39
CUX1-215ENST00000556210 RXRAP19793 462 aa17.51■□□□□ 0.39
CUX1-215ENST00000556210 HMGN5P82970 282 aaKnown RBP17.51■□□□□ 0.39
CUX1-215ENST00000556210 APOBRQ0VD83 1088 aa17.51■□□□□ 0.39
CUX1-215ENST00000556210 GCKRQ14397 625 aa17.51■□□□□ 0.39
CUX1-215ENST00000556210 ERCC4Q92889 916 aaPredicted RBP17.51■□□□□ 0.39
CUX1-215ENST00000556210 BRD1O95696 1058 aa17.5■□□□□ 0.39
CUX1-215ENST00000556210 UBE2HP62256 183 aa17.5■□□□□ 0.39
CUX1-215ENST00000556210 ME3Q16798 604 aa17.5■□□□□ 0.39
CUX1-215ENST00000556210 TBC1D2BQ9UPU7 963 aa17.5■□□□□ 0.39
CUX1-215ENST00000556210 TTLL7Q6ZT98 887 aa17.5■□□□□ 0.39
CUX1-215ENST00000556210 ZCRB1Q8TBF4 217 aaKnown RBP17.5■□□□□ 0.39
CUX1-215ENST00000556210 ZDHHC9Q9Y397 364 aa17.5■□□□□ 0.39
CUX1-215ENST00000556210 SLC4A8Q2Y0W8 1093 aa17.5■□□□□ 0.39
CUX1-215ENST00000556210 CPLX2Q6PUV4 134 aaKnown RBP17.5■□□□□ 0.39
CUX1-215ENST00000556210 TRMT112Q9UI30 125 aaKnown RBP17.5■□□□□ 0.39
CUX1-215ENST00000556210 OTUD7BQ6GQQ9 843 aa17.5■□□□□ 0.39
CUX1-215ENST00000556210 SLC27A2O14975 620 aa17.49■□□□□ 0.39
CUX1-215ENST00000556210 NRDCO43847 1150 aa17.49■□□□□ 0.39
CUX1-215ENST00000556210 IFIT5Q13325 482 aaKnown RBP17.49■□□□□ 0.39
CUX1-215ENST00000556210 TRIM29Q14134 588 aa17.49■□□□□ 0.39
CUX1-215ENST00000556210 NUP133Q8WUM0 1156 aa17.49■□□□□ 0.39
CUX1-215ENST00000556210 NLRP1Q9C000 1473 aa17.49■□□□□ 0.39
CUX1-215ENST00000556210 ARHGEF25Q86VW2 580 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 197.9 ms