RNA–Protein interactions for RNA: ENST00000556011.5

PSEN1-215, Transcript of presenilin 1, human

TSL 5

Gene PSEN1, Length 442 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSEN1-215	ENST00000556011	NCOR2	Q9Y618	2525 aa		11.73	□□□□□ -0.53
PSEN1-215	ENST00000556011	FAM208B	Q5VWN6	2430 aa		11.72	□□□□□ -0.53
PSEN1-215	ENST00000556011	PTPRZ1	P23471	2315 aa	Predicted RBP	11.72	□□□□□ -0.53
PSEN1-215	ENST00000556011	RASAL3	Q86YV0	1011 aa		11.72	□□□□□ -0.53
PSEN1-215	ENST00000556011	C2orf69	Q8N8R5	385 aa		11.72	□□□□□ -0.53
PSEN1-215	ENST00000556011	ATXN2L	Q8WWM7	1075 aa	Known RBP	11.72	□□□□□ -0.53
PSEN1-215	ENST00000556011	ALPK3	Q96L96	1907 aa		11.72	□□□□□ -0.53
PSEN1-215	ENST00000556011	USP9X	Q93008	2570 aa	Predicted RBP	11.72	□□□□□ -0.53
PSEN1-215	ENST00000556011	TM4SF1	P30408	202 aa		11.71	□□□□□ -0.53
PSEN1-215	ENST00000556011	SLC9C1	Q4G0N8	1177 aa		11.71	□□□□□ -0.53
PSEN1-215	ENST00000556011	CDC37L1	Q7L3B6	337 aa		11.71	□□□□□ -0.53
PSEN1-215	ENST00000556011	NBPF11	Q86T75	865 aa		11.71	□□□□□ -0.53
PSEN1-215	ENST00000556011	ZCRB1	Q8TBF4	217 aa	Known RBP	11.71	□□□□□ -0.53
PSEN1-215	ENST00000556011	FBXL18	Q96ME1	805 aa		11.71	□□□□□ -0.53
PSEN1-215	ENST00000556011	CNTNAP3B	Q96NU0	1288 aa		11.71	□□□□□ -0.53
PSEN1-215	ENST00000556011	CNTNAP3	Q9BZ76	1288 aa		11.71	□□□□□ -0.53
PSEN1-215	ENST00000556011	MAP1B	P46821	2468 aa	Known RBP	11.7	□□□□□ -0.54
PSEN1-215	ENST00000556011	REV3L	O60673	3130 aa		11.7	□□□□□ -0.54
PSEN1-215	ENST00000556011	ATP6V1A	P38606	617 aa		11.7	□□□□□ -0.54
PSEN1-215	ENST00000556011	USP48	Q86UV5	1035 aa		11.7	□□□□□ -0.54
PSEN1-215	ENST00000556011	SEMA6B	Q9H3T3	888 aa		11.7	□□□□□ -0.54
PSEN1-215	ENST00000556011	PGAP2	Q9UHJ9	254 aa		11.7	□□□□□ -0.54
PSEN1-215	ENST00000556011	HOXB3	P14651	431 aa	Predicted RBP	11.69	□□□□□ -0.54
PSEN1-215	ENST00000556011	NRXN2	Q9P2S2	1712 aa		11.69	□□□□□ -0.54
PSEN1-215	ENST00000556011	POLR2A	P24928	1970 aa	Known RBP	11.68	□□□□□ -0.54
PSEN1-215	ENST00000556011	COL11A2	P13942	1736 aa	Predicted RBP	11.68	□□□□□ -0.54
PSEN1-215	ENST00000556011	CARMIL3	Q8ND23	1372 aa		11.67	□□□□□ -0.54
PSEN1-215	ENST00000556011	ANKRD26	Q9UPS8	1709 aa		11.67	□□□□□ -0.54
PSEN1-215	ENST00000556011	CD99L2	Q8TCZ2	262 aa		11.67	□□□□□ -0.54
PSEN1-215	ENST00000556011	CFHR5	Q9BXR6	569 aa		11.67	□□□□□ -0.54
PSEN1-215	ENST00000556011	UBE2O	Q9C0C9	1292 aa	Known RBP	11.67	□□□□□ -0.54
PSEN1-215	ENST00000556011	EFCC1	Q9HA90	598 aa		11.67	□□□□□ -0.54
PSEN1-215	ENST00000556011	ADARB2	Q9NS39	739 aa	Known RBP	11.67	□□□□□ -0.54
PSEN1-215	ENST00000556011	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	11.67	□□□□□ -0.54
PSEN1-215	ENST00000556011	USP24	Q9UPU5	2620 aa		11.66	□□□□□ -0.54
PSEN1-215	ENST00000556011	PLEKHG3	A1L390	1219 aa		11.66	□□□□□ -0.54
PSEN1-215	ENST00000556011	MAGEA10	P43363	369 aa	Predicted RBP	11.66	□□□□□ -0.54
PSEN1-215	ENST00000556011	TM4SF4	P48230	202 aa		11.66	□□□□□ -0.54
PSEN1-215	ENST00000556011	LURAP1L	Q8IV03	231 aa		11.66	□□□□□ -0.54
PSEN1-215	ENST00000556011	ANKRD31	Q8N7Z5	1873 aa		11.66	□□□□□ -0.54
PSEN1-215	ENST00000556011	DNAH14	Q0VDD8	3507 aa		11.65	□□□□□ -0.54
PSEN1-215	ENST00000556011	MYH14	Q7Z406	1995 aa	Known RBP	11.65	□□□□□ -0.54
PSEN1-215	ENST00000556011	MRPS5	P82675	430 aa	Known RBP	11.65	□□□□□ -0.54
PSEN1-215	ENST00000556011	CAP1	Q01518	475 aa		11.65	□□□□□ -0.54
PSEN1-215	ENST00000556011	IL27	Q8NEV9	243 aa		11.65	□□□□□ -0.54
PSEN1-215	ENST00000556011	ZNF609	O15014	1411 aa		11.65	□□□□□ -0.54
PSEN1-215	ENST00000556011	PIK3C2G	O75747	1445 aa		11.65	□□□□□ -0.54
PSEN1-215	ENST00000556011	RPS6KA4	O75676	772 aa		11.64	□□□□□ -0.55
PSEN1-215	ENST00000556011	KCNH5	Q8NCM2	988 aa		11.64	□□□□□ -0.55
PSEN1-215	ENST00000556011	PTCH2	Q9Y6C5	1203 aa		11.64	□□□□□ -0.55
PSEN1-215	ENST00000556011	KDM3B	Q7LBC6	1761 aa		11.64	□□□□□ -0.55
PSEN1-215	ENST00000556011	USP42	Q9H9J4	1324 aa	Known RBP	11.63	□□□□□ -0.55
PSEN1-215	ENST00000556011	TRPM4	Q8TD43	1214 aa		11.63	□□□□□ -0.55
PSEN1-215	ENST00000556011	SH3TC2	Q8TF17	1288 aa		11.63	□□□□□ -0.55
PSEN1-215	ENST00000556011	PIGB	Q92521	554 aa		11.63	□□□□□ -0.55
PSEN1-215	ENST00000556011	THEG	Q9P2T0	379 aa		11.63	□□□□□ -0.55
PSEN1-215	ENST00000556011	NFAT5	O94916	1531 aa		11.63	□□□□□ -0.55
PSEN1-215	ENST00000556011	COL2A1	P02458	1487 aa	Predicted RBP	11.63	□□□□□ -0.55
PSEN1-215	ENST00000556011	MRC1	P22897	1456 aa		11.63	□□□□□ -0.55
PSEN1-215	ENST00000556011	WDR87	Q6ZQQ6	2873 aa		11.62	□□□□□ -0.55
PSEN1-215	ENST00000556011	HIRA	P54198	1017 aa	Predicted RBP	11.62	□□□□□ -0.55
PSEN1-215	ENST00000556011	EIF6	P56537	245 aa	Known RBP	11.62	□□□□□ -0.55
PSEN1-215	ENST00000556011	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
PSEN1-215	ENST00000556011	SOGA3	Q5TF21	947 aa		11.62	□□□□□ -0.55
PSEN1-215	ENST00000556011	ERO1A	Q96HE7	468 aa		11.62	□□□□□ -0.55
PSEN1-215	ENST00000556011	MYO15A	Q9UKN7	3530 aa		11.62	□□□□□ -0.55
PSEN1-215	ENST00000556011	MED19	A0JLT2	244 aa	Predicted RBP	11.61	□□□□□ -0.55
PSEN1-215	ENST00000556011	PRPF40B	Q6NWY9	871 aa	Known RBP	11.61	□□□□□ -0.55
PSEN1-215	ENST00000556011	KHSRP	Q92945	711 aa	Known RBP eCLIP	11.61	□□□□□ -0.55	1e-7	■■■■□ 24
PSEN1-215	ENST00000556011	TTYH1	Q9H313	450 aa	Predicted RBP	11.61	□□□□□ -0.55
PSEN1-215	ENST00000556011	CCDC61	Q9Y6R9	512 aa		11.61	□□□□□ -0.55
PSEN1-215	ENST00000556011	ARFGEF2	Q9Y6D5	1785 aa		11.6	□□□□□ -0.55
PSEN1-215	ENST00000556011	SYN1	P17600	705 aa		11.6	□□□□□ -0.55
PSEN1-215	ENST00000556011	IARS	P41252	1262 aa	Known RBP	11.6	□□□□□ -0.55
PSEN1-215	ENST00000556011	ZC3H15	Q8WU90	426 aa	Known RBP	11.6	□□□□□ -0.55
PSEN1-215	ENST00000556011	C14orf93	Q9H972	538 aa	Known RBP	11.6	□□□□□ -0.55
PSEN1-215	ENST00000556011	GPRC5D	Q9NZD1	345 aa		11.6	□□□□□ -0.55
PSEN1-215	ENST00000556011	BPTF	Q12830	3046 aa		11.6	□□□□□ -0.55
PSEN1-215	ENST00000556011	COL4A5	P29400	1685 aa		11.59	□□□□□ -0.55
PSEN1-215	ENST00000556011	FARP2	O94887	1054 aa	Predicted RBP	11.59	□□□□□ -0.55
PSEN1-215	ENST00000556011	CFAP70	Q5T0N1	1121 aa		11.59	□□□□□ -0.55
PSEN1-215	ENST00000556011	ADGRB1	O14514	1584 aa		11.58	□□□□□ -0.55
PSEN1-215	ENST00000556011	ZNF646	O15015	1829 aa	Predicted RBP	11.58	□□□□□ -0.56
PSEN1-215	ENST00000556011	COL5A3	P25940	1745 aa	Predicted RBP	11.58	□□□□□ -0.56
PSEN1-215	ENST00000556011	SERPINB2	P05120	415 aa		11.58	□□□□□ -0.56
PSEN1-215	ENST00000556011	MTFR1	Q15390	333 aa		11.58	□□□□□ -0.56
PSEN1-215	ENST00000556011	RC3H1	Q5TC82	1133 aa	Known RBP	11.58	□□□□□ -0.56
PSEN1-215	ENST00000556011	C7orf61	Q8IZ16	206 aa		11.58	□□□□□ -0.56
PSEN1-215	ENST00000556011	PPM1E	Q8WY54	764 aa		11.58	□□□□□ -0.56
PSEN1-215	ENST00000556011	CDK19	Q9BWU1	502 aa		11.58	□□□□□ -0.56
PSEN1-215	ENST00000556011	TRAK1	Q9UPV9	953 aa		11.58	□□□□□ -0.56
PSEN1-215	ENST00000556011	RIF1	Q5UIP0	2472 aa	Known RBP	11.57	□□□□□ -0.56
PSEN1-215	ENST00000556011	ZIC2	O95409	532 aa	Predicted RBP	11.57	□□□□□ -0.56
PSEN1-215	ENST00000556011	NFIX	Q14938	502 aa		11.57	□□□□□ -0.56
PSEN1-215	ENST00000556011	CCDC93	Q567U6	631 aa		11.57	□□□□□ -0.56
PSEN1-215	ENST00000556011	JDP2	Q8WYK2	163 aa		11.57	□□□□□ -0.56
PSEN1-215	ENST00000556011	UIMC1	Q96RL1	719 aa		11.57	□□□□□ -0.56
PSEN1-215	ENST00000556011	ASAP1	Q9ULH1	1129 aa		11.57	□□□□□ -0.56
PSEN1-215	ENST00000556011	ASPM	Q8IZT6	3477 aa		11.56	□□□□□ -0.56
PSEN1-215	ENST00000556011	PRR33	A8MZF0	331 aa		11.56	□□□□□ -0.56

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