RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 C7orf43Q8WVR3 580 aa11.65□□□□□ -0.54
TDP1-208ENST00000553989 JDP2Q8WYK2 163 aa11.65□□□□□ -0.54
TDP1-208ENST00000553989 L3MBTL3Q96JM7 780 aaPredicted RBP11.65□□□□□ -0.54
TDP1-208ENST00000553989 TAF1DQ9H5J8 278 aaPredicted RBP11.65□□□□□ -0.54
TDP1-208ENST00000553989 HACL1Q9UJ83 578 aa11.65□□□□□ -0.54
TDP1-208ENST00000553989 RNF123Q5XPI4 1314 aa11.64□□□□□ -0.55
TDP1-208ENST00000553989 MAP3K15Q6ZN16 1313 aa11.64□□□□□ -0.55
TDP1-208ENST00000553989 KLRG2A4D1S0 409 aaPredicted RBP11.64□□□□□ -0.55
TDP1-208ENST00000553989 GPTP24298 496 aa11.64□□□□□ -0.55
TDP1-208ENST00000553989 SYNE4Q8N205 404 aa11.64□□□□□ -0.55
TDP1-208ENST00000553989 THUMPD2Q9BTF0 503 aaKnown RBP11.64□□□□□ -0.55
TDP1-208ENST00000553989 ZBTB3Q9H5J0 574 aa11.64□□□□□ -0.55
TDP1-208ENST00000553989 ABCC12Q96J65 1359 aa11.64□□□□□ -0.55
TDP1-208ENST00000553989 ERVV-1B6SEH8 477 aa11.63□□□□□ -0.55
TDP1-208ENST00000553989 EPHX2P34913 555 aa11.63□□□□□ -0.55
TDP1-208ENST00000553989 NFE2L2Q16236 605 aa11.63□□□□□ -0.55
TDP1-208ENST00000553989 PNNQ9H307 717 aaKnown RBP11.63□□□□□ -0.55
TDP1-208ENST00000553989 SCN4AP35499 1836 aa11.63□□□□□ -0.55
TDP1-208ENST00000553989 TMEM88BA6NKF7 163 aa11.62□□□□□ -0.55
TDP1-208ENST00000553989 TCERG1O14776 1098 aaKnown RBP11.62□□□□□ -0.55
TDP1-208ENST00000553989 LMOD1P29536 600 aaPredicted RBP11.62□□□□□ -0.55
TDP1-208ENST00000553989 EIF6P56537 245 aaKnown RBP11.62□□□□□ -0.55
TDP1-208ENST00000553989 EIF4A1P60842 406 aaKnown RBP11.62□□□□□ -0.55
TDP1-208ENST00000553989 TTLL7Q6ZT98 887 aa11.62□□□□□ -0.55
TDP1-208ENST00000553989 PNMA8AQ86V59 439 aaPredicted RBP11.62□□□□□ -0.55
TDP1-208ENST00000553989 AIDAQ96BJ3 306 aa11.62□□□□□ -0.55
TDP1-208ENST00000553989 TMX4Q9H1E5 349 aaPredicted RBP11.62□□□□□ -0.55
TDP1-208ENST00000553989 GJA3Q9Y6H8 435 aa11.62□□□□□ -0.55
TDP1-208ENST00000553989 CNTNAP1P78357 1384 aa11.62□□□□□ -0.55
TDP1-208ENST00000553989 KDM3BQ7LBC6 1761 aa11.62□□□□□ -0.55
TDP1-208ENST00000553989 PASKQ96RG2 1323 aa11.61□□□□□ -0.55
TDP1-208ENST00000553989 CRY2Q49AN0 593 aa11.61□□□□□ -0.55
TDP1-208ENST00000553989 CC2D2BQ6DHV5 1058 aa11.61□□□□□ -0.55
TDP1-208ENST00000553989 GPC2Q8N158 579 aa11.61□□□□□ -0.55
TDP1-208ENST00000553989 RBM17Q96I25 401 aaKnown RBP11.61□□□□□ -0.55
TDP1-208ENST00000553989 TSPYL4Q9UJ04 414 aa11.61□□□□□ -0.55
TDP1-208ENST00000553989 UBN2Q6ZU65 1347 aa11.6□□□□□ -0.55
TDP1-208ENST00000553989 DLG5Q8TDM6 1919 aa11.6□□□□□ -0.55
TDP1-208ENST00000553989 FZD9O00144 591 aa11.6□□□□□ -0.55
TDP1-208ENST00000553989 PPEF1O14829 653 aaPredicted RBP11.6□□□□□ -0.55
TDP1-208ENST00000553989 EIF2S2P20042 333 aaKnown RBP11.6□□□□□ -0.55
TDP1-208ENST00000553989 SUSD4Q5VX71 490 aa11.6□□□□□ -0.55
TDP1-208ENST00000553989 MAP1SQ66K74 1059 aaPredicted RBP11.6□□□□□ -0.55
TDP1-208ENST00000553989 PPP1R42Q7Z4L9 355 aa11.6□□□□□ -0.55
TDP1-208ENST00000553989 MIER1Q8N108 512 aa11.6□□□□□ -0.55
TDP1-208ENST00000553989 LARGE2Q8N3Y3 721 aa11.6□□□□□ -0.55
TDP1-208ENST00000553989 PLEKHF1Q96S99 279 aa11.6□□□□□ -0.55
TDP1-208ENST00000553989 PSMD1Q99460 953 aa11.6□□□□□ -0.55
TDP1-208ENST00000553989 ABT1Q9ULW3 272 aaKnown RBP11.6□□□□□ -0.55
TDP1-208ENST00000553989 GTF3C3Q9Y5Q9 886 aa11.6□□□□□ -0.55
TDP1-208ENST00000553989 IBTKQ9P2D0 1353 aaPredicted RBP11.59□□□□□ -0.55
TDP1-208ENST00000553989 ABCB7O75027 752 aa11.59□□□□□ -0.55
TDP1-208ENST00000553989 NIM1KQ8IY84 436 aa11.59□□□□□ -0.55
TDP1-208ENST00000553989 CNTROBQ8N137 903 aa11.59□□□□□ -0.55
TDP1-208ENST00000553989 ERBB4Q15303 1308 aa11.59□□□□□ -0.55
TDP1-208ENST00000553989 NUP98P52948 1817 aa11.58□□□□□ -0.56
TDP1-208ENST00000553989 FOXN1O15353 648 aa11.58□□□□□ -0.56
TDP1-208ENST00000553989 ITGBL1O95965 494 aaPredicted RBP11.58□□□□□ -0.56
TDP1-208ENST00000553989 VEGFBP49765 207 aa11.58□□□□□ -0.56
TDP1-208ENST00000553989 PLCB2Q00722 1185 aa11.58□□□□□ -0.56
TDP1-208ENST00000553989 GRIPAP1Q4V328 841 aa11.58□□□□□ -0.56
TDP1-208ENST00000553989 PARP10Q53GL7 1025 aa11.58□□□□□ -0.56
TDP1-208ENST00000553989 GIGYF2Q6Y7W6 1299 aaKnown RBP11.58□□□□□ -0.56
TDP1-208ENST00000553989 PAXIP1Q6ZW49 1069 aaPredicted RBP11.58□□□□□ -0.56
TDP1-208ENST00000553989 NLRP3Q96P20 1036 aa11.58□□□□□ -0.56
TDP1-208ENST00000553989 PPIP5K2O43314 1243 aa11.57□□□□□ -0.56
TDP1-208ENST00000553989 NTSR2O95665 410 aa11.57□□□□□ -0.56
TDP1-208ENST00000553989 HOXA10P31260 410 aaPredicted RBP11.57□□□□□ -0.56
TDP1-208ENST00000553989 RIPK4P57078 832 aa11.57□□□□□ -0.56
TDP1-208ENST00000553989 LMOD3Q0VAK6 560 aa11.57□□□□□ -0.56
TDP1-208ENST00000553989 ZNF34Q8IZ26 560 aa11.57□□□□□ -0.56
TDP1-208ENST00000553989 CRAMP1Q96RY5 1269 aa11.57□□□□□ -0.56
TDP1-208ENST00000553989 UTP14AQ9BVJ6 771 aaKnown RBP11.57□□□□□ -0.56
TDP1-208ENST00000553989 PCNTO95613 3336 aa11.57□□□□□ -0.56
TDP1-208ENST00000553989 RIC1Q4ADV7 1423 aa11.57□□□□□ -0.56
TDP1-208ENST00000553989 ANXA1P04083 346 aa11.56□□□□□ -0.56
TDP1-208ENST00000553989 CTCFP49711 727 aaPredicted RBP11.56□□□□□ -0.56
TDP1-208ENST00000553989 AIMP1Q12904 312 aaKnown RBP11.56□□□□□ -0.56
TDP1-208ENST00000553989 GRM1Q13255 1194 aa11.56□□□□□ -0.56
TDP1-208ENST00000553989 DEFB115Q30KQ5 88 aa11.56□□□□□ -0.56
TDP1-208ENST00000553989 NECTIN2Q92692 538 aa11.56□□□□□ -0.56
TDP1-208ENST00000553989 SNED1Q8TER0 1413 aa11.55□□□□□ -0.56
TDP1-208ENST00000553989 ADAMTSL1Q8N6G6 1762 aa11.55□□□□□ -0.56
TDP1-208ENST00000553989 EPS15P42566 896 aa11.55□□□□□ -0.56
TDP1-208ENST00000553989 AOC3Q16853 763 aa11.55□□□□□ -0.56
TDP1-208ENST00000553989 C3orf67Q6ZVT6 689 aa11.55□□□□□ -0.56
TDP1-208ENST00000553989 SLC51AQ86UW1 340 aa11.55□□□□□ -0.56
TDP1-208ENST00000553989 SUPT20HQ8NEM7 779 aa11.55□□□□□ -0.56
TDP1-208ENST00000553989 COL4A5P29400 1685 aa11.55□□□□□ -0.56
TDP1-208ENST00000553989 SCNN1DP51172 638 aa11.54□□□□□ -0.56
TDP1-208ENST00000553989 NEUROD2Q15784 382 aa11.54□□□□□ -0.56
TDP1-208ENST00000553989 PROSER3Q2NL68 480 aa11.54□□□□□ -0.56
TDP1-208ENST00000553989 HSP90AB3PQ58FF7 597 aa11.54□□□□□ -0.56
TDP1-208ENST00000553989 DPP8Q6V1X1 898 aaPredicted RBP11.54□□□□□ -0.56
TDP1-208ENST00000553989 PRDM10Q9NQV6 1147 aa11.54□□□□□ -0.56
TDP1-208ENST00000553989 DDX21Q9NR30 783 aaKnown RBP eCLIP11.54□□□□□ -0.56
TDP1-208ENST00000553989 ATP6V0A2Q9Y487 856 aa11.54□□□□□ -0.56
TDP1-208ENST00000553989 LAS1LQ9Y4W2 734 aaKnown RBP11.54□□□□□ -0.56
TDP1-208ENST00000553989 ABCC4O15439 1325 aa11.54□□□□□ -0.56
TDP1-208ENST00000553989 WDR33Q9C0J8 1336 aaKnown RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms