RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 SRP68Q9UHB9 627 aaKnown RBP10.81□□□□□ -0.68
PSEN1-209ENST00000553855 NARFQ9UHQ1 456 aa10.81□□□□□ -0.68
PSEN1-209ENST00000553855 ZNF652Q9Y2D9 606 aa10.81□□□□□ -0.68
PSEN1-209ENST00000553855 TJP1Q07157 1748 aa10.81□□□□□ -0.68
PSEN1-209ENST00000553855 CICQ96RK0 1608 aaPredicted RBP10.8□□□□□ -0.68
PSEN1-209ENST00000553855 GIGYF1O75420 1035 aaPredicted RBP10.8□□□□□ -0.68
PSEN1-209ENST00000553855 EIF2S2P20042 333 aaKnown RBP10.8□□□□□ -0.68
PSEN1-209ENST00000553855 EIF5P55010 431 aaKnown RBP10.8□□□□□ -0.68
PSEN1-209ENST00000553855 DSG2Q14126 1118 aa10.8□□□□□ -0.68
PSEN1-209ENST00000553855 PDIA6Q15084 440 aa10.8□□□□□ -0.68
PSEN1-209ENST00000553855 DZIP3Q86Y13 1208 aaKnown RBP10.8□□□□□ -0.68
PSEN1-209ENST00000553855 NGEFQ8N5V2 710 aa10.8□□□□□ -0.68
PSEN1-209ENST00000553855 IFT57Q9NWB7 429 aa10.8□□□□□ -0.68
PSEN1-209ENST00000553855 CD2APQ9Y5K6 639 aa10.8□□□□□ -0.68
PSEN1-209ENST00000553855 COL5A3P25940 1745 aaPredicted RBP10.8□□□□□ -0.68
PSEN1-209ENST00000553855 UBR3Q6ZT12 1888 aa10.8□□□□□ -0.68
PSEN1-209ENST00000553855 SIPA1L3O60292 1781 aaPredicted RBP10.8□□□□□ -0.68
PSEN1-209ENST00000553855 TUBGCP6Q96RT7 1819 aa10.79□□□□□ -0.68
PSEN1-209ENST00000553855 PRAMEF22A3QJZ6 481 aa10.79□□□□□ -0.68
PSEN1-209ENST00000553855 CCER2I3L3R5 266 aa10.79□□□□□ -0.68
PSEN1-209ENST00000553855 CHL1O00533 1208 aa10.79□□□□□ -0.68
PSEN1-209ENST00000553855 POTEJP0CG39 1038 aa10.79□□□□□ -0.68
PSEN1-209ENST00000553855 CCDC27Q2M243 656 aa10.79□□□□□ -0.68
PSEN1-209ENST00000553855 KIF6Q6ZMV9 814 aa10.79□□□□□ -0.68
PSEN1-209ENST00000553855 MICALL2Q8IY33 904 aa10.79□□□□□ -0.68
PSEN1-209ENST00000553855 KRI1Q8N9T8 703 aaKnown RBP10.79□□□□□ -0.68
PSEN1-209ENST00000553855 TBC1D2BQ9UPU7 963 aa10.79□□□□□ -0.68
PSEN1-209ENST00000553855 SALL2Q9Y467 1007 aaPredicted RBP10.79□□□□□ -0.68
PSEN1-209ENST00000553855 UBR2Q8IWV8 1755 aa10.79□□□□□ -0.68
PSEN1-209ENST00000553855 ERBB4Q15303 1308 aa10.79□□□□□ -0.68
PSEN1-209ENST00000553855 DLG5Q8TDM6 1919 aa10.78□□□□□ -0.68
PSEN1-209ENST00000553855 MYL6BP14649 208 aa10.78□□□□□ -0.68
PSEN1-209ENST00000553855 GPR162Q16538 588 aa10.78□□□□□ -0.68
PSEN1-209ENST00000553855 C3orf67Q6ZVT6 689 aa10.78□□□□□ -0.68
PSEN1-209ENST00000553855 TMC2Q8TDI7 906 aa10.78□□□□□ -0.68
PSEN1-209ENST00000553855 BOLA1Q9Y3E2 137 aa10.78□□□□□ -0.68
PSEN1-209ENST00000553855 HOXB7P09629 217 aa10.77□□□□□ -0.69
PSEN1-209ENST00000553855 PIP4K2AP48426 406 aaPredicted RBP10.77□□□□□ -0.69
PSEN1-209ENST00000553855 FOXK1P85037 733 aa10.77□□□□□ -0.69
PSEN1-209ENST00000553855 BICDL1Q6ZP65 573 aa10.77□□□□□ -0.69
PSEN1-209ENST00000553855 SETDB2Q96T68 719 aa10.77□□□□□ -0.69
PSEN1-209ENST00000553855 HDGFL1Q5TGJ6 251 aa10.76□□□□□ -0.69
PSEN1-209ENST00000553855 CLEC4GQ6UXB4 293 aa10.76□□□□□ -0.69
PSEN1-209ENST00000553855 WWC1Q8IX03 1113 aa10.76□□□□□ -0.69
PSEN1-209ENST00000553855 NECTIN2Q92692 538 aa10.76□□□□□ -0.69
PSEN1-209ENST00000553855 OTUD5Q96G74 571 aa10.76□□□□□ -0.69
PSEN1-209ENST00000553855 MBIPQ9NS73 344 aa10.76□□□□□ -0.69
PSEN1-209ENST00000553855 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.76□□□□□ -0.69
PSEN1-209ENST00000553855 DAXXQ9UER7 740 aaPredicted RBP10.76□□□□□ -0.69
PSEN1-209ENST00000553855 SENP3-EIF4A1A0A087X0R7 540 aa10.75□□□□□ -0.69
PSEN1-209ENST00000553855 GTF2E1P29083 439 aaPredicted RBP10.75□□□□□ -0.69
PSEN1-209ENST00000553855 TM4SF1P30408 202 aa10.75□□□□□ -0.69
PSEN1-209ENST00000553855 TGFB2P61812 414 aa10.75□□□□□ -0.69
PSEN1-209ENST00000553855 DUSP27Q5VZP5 1158 aa10.75□□□□□ -0.69
PSEN1-209ENST00000553855 WDR63Q8IWG1 891 aa10.75□□□□□ -0.69
PSEN1-209ENST00000553855 IL16Q14005 1332 aa10.75□□□□□ -0.69
PSEN1-209ENST00000553855 KDM3BQ7LBC6 1761 aa10.75□□□□□ -0.69
PSEN1-209ENST00000553855 NBPF26B4DH59 902 aa10.74□□□□□ -0.69
PSEN1-209ENST00000553855 GRIN3BO60391 1043 aa10.74□□□□□ -0.69
PSEN1-209ENST00000553855 CAMTA2O94983 1202 aa10.74□□□□□ -0.69
PSEN1-209ENST00000553855 SERPINB2P05120 415 aa10.74□□□□□ -0.69
PSEN1-209ENST00000553855 ZNF853P0CG23 659 aa10.74□□□□□ -0.69
PSEN1-209ENST00000553855 ST5P78524 1137 aa10.74□□□□□ -0.69
PSEN1-209ENST00000553855 NFIXQ14938 502 aa10.74□□□□□ -0.69
PSEN1-209ENST00000553855 NBPF10Q6P3W6 841 aaKnown RBP10.74□□□□□ -0.69
PSEN1-209ENST00000553855 NBPF15Q8N660 670 aa10.74□□□□□ -0.69
PSEN1-209ENST00000553855 MYH16Q9H6N6 1097 aa10.74□□□□□ -0.69
PSEN1-209ENST00000553855 GPBP1L1Q9HC44 474 aaPredicted RBP10.74□□□□□ -0.69
PSEN1-209ENST00000553855 DBF4Q9UBU7 674 aaPredicted RBP10.74□□□□□ -0.69
PSEN1-209ENST00000553855 CARMIL3Q8ND23 1372 aa10.74□□□□□ -0.69
PSEN1-209ENST00000553855 MYH14Q7Z406 1995 aaKnown RBP10.74□□□□□ -0.69
PSEN1-209ENST00000553855 ERVV-1B6SEH8 477 aa10.73□□□□□ -0.69
PSEN1-209ENST00000553855 POLRMTO00411 1230 aaKnown RBP10.73□□□□□ -0.69
PSEN1-209ENST00000553855 ELL2O00472 640 aaPredicted RBP10.73□□□□□ -0.69
PSEN1-209ENST00000553855 AIMP1Q12904 312 aaKnown RBP10.73□□□□□ -0.69
PSEN1-209ENST00000553855 HSP90AB3PQ58FF7 597 aa10.73□□□□□ -0.69
PSEN1-209ENST00000553855 CCDC30Q5VVM6 783 aa10.73□□□□□ -0.69
PSEN1-209ENST00000553855 TBC1D9BQ66K14 1250 aa10.73□□□□□ -0.69
PSEN1-209ENST00000553855 NLGN2Q8NFZ4 835 aa10.73□□□□□ -0.69
PSEN1-209ENST00000553855 STK31Q9BXU1 1019 aa10.73□□□□□ -0.69
PSEN1-209ENST00000553855 DDX21Q9NR30 783 aaKnown RBP eCLIP10.73□□□□□ -0.69
PSEN1-209ENST00000553855 YY1P25490 414 aa10.72□□□□□ -0.69
PSEN1-209ENST00000553855 DDR1Q08345 913 aa10.72□□□□□ -0.69
PSEN1-209ENST00000553855 TPTE2Q6XPS3 522 aa10.72□□□□□ -0.69
PSEN1-209ENST00000553855 NBPF5PQ86XG9 351 aaPredicted RBP10.72□□□□□ -0.69
PSEN1-209ENST00000553855 CNBD1Q8NA66 436 aa10.72□□□□□ -0.69
PSEN1-209ENST00000553855 NYXQ9GZU5 481 aa10.72□□□□□ -0.69
PSEN1-209ENST00000553855 ZBTB3Q9H5J0 574 aa10.72□□□□□ -0.69
PSEN1-209ENST00000553855 BCL2L12Q9HB09 334 aa10.72□□□□□ -0.69
PSEN1-209ENST00000553855 HYPKQ9NX55 129 aa10.72□□□□□ -0.69
PSEN1-209ENST00000553855 PDZRN3Q9UPQ7 1066 aa10.72□□□□□ -0.69
PSEN1-209ENST00000553855 NIP7Q9Y221 180 aaKnown RBP eCLIP10.72□□□□□ -0.69
PSEN1-209ENST00000553855 MAP3K15Q6ZN16 1313 aa10.72□□□□□ -0.69
PSEN1-209ENST00000553855 C4AP0C0L4 1744 aa10.72□□□□□ -0.69
PSEN1-209ENST00000553855 LAMB4A4D0S4 1761 aa10.71□□□□□ -0.69
PSEN1-209ENST00000553855 PDE6BP35913 854 aa10.71□□□□□ -0.69
PSEN1-209ENST00000553855 COL24A1Q17RW2 1714 aa10.71□□□□□ -0.69
PSEN1-209ENST00000553855 KRT24Q2M2I5 525 aa10.71□□□□□ -0.69
PSEN1-209ENST00000553855 PLPP6Q8IY26 295 aa10.71□□□□□ -0.69
PSEN1-209ENST00000553855 SLAIN1Q8ND83 568 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms