RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 HOXA10P31260 410 aaPredicted RBP22.78■■□□□ 1.24
CHMP1A-205ENST00000548650 KLRG1Q96E93 195 aa22.78■■□□□ 1.24
CHMP1A-205ENST00000548650 ADAMTS8Q9UP79 889 aa22.78■■□□□ 1.24
CHMP1A-205ENST00000548650 ZNF541Q9H0D2 1346 aa22.78■■□□□ 1.24
CHMP1A-205ENST00000548650 ADAMTSL1Q8N6G6 1762 aa22.77■■□□□ 1.24
CHMP1A-205ENST00000548650 PARP10Q53GL7 1025 aa22.77■■□□□ 1.24
CHMP1A-205ENST00000548650 C3orf67Q6ZVT6 689 aa22.77■■□□□ 1.24
CHMP1A-205ENST00000548650 L3MBTL3Q96JM7 780 aaPredicted RBP22.77■■□□□ 1.24
CHMP1A-205ENST00000548650 NECTIN2Q92692 538 aa22.76■■□□□ 1.23
CHMP1A-205ENST00000548650 RPGRQ92834 1020 aaKnown RBP22.76■■□□□ 1.23
CHMP1A-205ENST00000548650 IARSP41252 1262 aaKnown RBP22.75■■□□□ 1.23
CHMP1A-205ENST00000548650 PPP1R42Q7Z4L9 355 aa22.75■■□□□ 1.23
CHMP1A-205ENST00000548650 SLC51AQ86UW1 340 aa22.75■■□□□ 1.23
CHMP1A-205ENST00000548650 PSMD1Q99460 953 aa22.75■■□□□ 1.23
CHMP1A-205ENST00000548650 DDX60Q8IY21 1712 aaKnown RBP22.74■■□□□ 1.23
CHMP1A-205ENST00000548650 POTEIP0CG38 1075 aa22.74■■□□□ 1.23
CHMP1A-205ENST00000548650 POTEJP0CG39 1038 aa22.74■■□□□ 1.23
CHMP1A-205ENST00000548650 XAGE3Q8WTP9 111 aa22.74■■□□□ 1.23
CHMP1A-205ENST00000548650 RNF123Q5XPI4 1314 aa22.74■■□□□ 1.23
CHMP1A-205ENST00000548650 CC2D2BQ6DHV5 1058 aa22.73■■□□□ 1.23
CHMP1A-205ENST00000548650 COPS6Q7L5N1 327 aa22.73■■□□□ 1.23
CHMP1A-205ENST00000548650 SYNE4Q8N205 404 aa22.73■■□□□ 1.23
CHMP1A-205ENST00000548650 JMYQ8N9B5 988 aa22.73■■□□□ 1.23
CHMP1A-205ENST00000548650 CRAMP1Q96RY5 1269 aa22.73■■□□□ 1.23
CHMP1A-205ENST00000548650 DDX21Q9NR30 783 aaKnown RBP eCLIP22.73■■□□□ 1.23
CHMP1A-205ENST00000548650 LAS1LQ9Y4W2 734 aaKnown RBP22.73■■□□□ 1.23
CHMP1A-205ENST00000548650 IQCA1LA6NCM1 817 aa22.72■■□□□ 1.23
CHMP1A-205ENST00000548650 UTP14AQ9BVJ6 771 aaKnown RBP22.72■■□□□ 1.23
CHMP1A-205ENST00000548650 CHPF2Q9P2E5 772 aa22.72■■□□□ 1.23
CHMP1A-205ENST00000548650 PPEF1O14829 653 aaPredicted RBP22.71■■□□□ 1.23
CHMP1A-205ENST00000548650 HOXB7P09629 217 aa22.71■■□□□ 1.23
CHMP1A-205ENST00000548650 AIMP1Q12904 312 aaKnown RBP22.71■■□□□ 1.23
CHMP1A-205ENST00000548650 HSP90AB3PQ58FF7 597 aa22.71■■□□□ 1.23
CHMP1A-205ENST00000548650 CHADLQ6NUI6 762 aa22.71■■□□□ 1.23
CHMP1A-205ENST00000548650 NLRP10Q86W26 655 aa22.71■■□□□ 1.23
CHMP1A-205ENST00000548650 RBM17Q96I25 401 aaKnown RBP22.71■■□□□ 1.23
CHMP1A-205ENST00000548650 LTBP1Q14766 1721 aa22.71■■□□□ 1.23
CHMP1A-205ENST00000548650 FZD9O00144 591 aa22.7■■□□□ 1.22
CHMP1A-205ENST00000548650 SLC10A5Q5PT55 438 aa22.7■■□□□ 1.22
CHMP1A-205ENST00000548650 HDGFL1Q5TGJ6 251 aa22.7■■□□□ 1.22
CHMP1A-205ENST00000548650 TAF1DQ9H5J8 278 aaPredicted RBP22.7■■□□□ 1.22
CHMP1A-205ENST00000548650 LRRC37AA6NMS7 1700 aa22.7■■□□□ 1.22
CHMP1A-205ENST00000548650 TAF1P21675 1872 aa22.69■■□□□ 1.22
CHMP1A-205ENST00000548650 ABCC4O15439 1325 aa22.69■■□□□ 1.22
CHMP1A-205ENST00000548650 IFFO2Q5TF58 517 aa22.69■■□□□ 1.22
CHMP1A-205ENST00000548650 CFAP44Q96MT7 982 aa22.69■■□□□ 1.22
CHMP1A-205ENST00000548650 NLRP3Q96P20 1036 aa22.69■■□□□ 1.22
CHMP1A-205ENST00000548650 TCIRG1Q13488 830 aa22.67■■□□□ 1.22
CHMP1A-205ENST00000548650 GRIPAP1Q4V328 841 aa22.67■■□□□ 1.22
CHMP1A-205ENST00000548650 LDHDQ86WU2 507 aa22.67■■□□□ 1.22
CHMP1A-205ENST00000548650 MBIPQ9NS73 344 aa22.67■■□□□ 1.22
CHMP1A-205ENST00000548650 ZNF853P0CG23 659 aa22.66■■□□□ 1.22
CHMP1A-205ENST00000548650 DUOX1Q9NRD9 1551 aa22.65■■□□□ 1.22
CHMP1A-205ENST00000548650 TCERG1O14776 1098 aaKnown RBP22.65■■□□□ 1.22
CHMP1A-205ENST00000548650 GPC2Q8N158 579 aa22.65■■□□□ 1.22
CHMP1A-205ENST00000548650 JDP2Q8WYK2 163 aa22.65■■□□□ 1.22
CHMP1A-205ENST00000548650 DBF4Q9UBU7 674 aaPredicted RBP22.65■■□□□ 1.22
CHMP1A-205ENST00000548650 HACL1Q9UJ83 578 aa22.65■■□□□ 1.22
CHMP1A-205ENST00000548650 SH3TC1Q8TE82 1336 aa22.64■■□□□ 1.22
CHMP1A-205ENST00000548650 APAF1O14727 1248 aa22.64■■□□□ 1.21
CHMP1A-205ENST00000548650 HCLS1P14317 486 aaPredicted RBP22.64■■□□□ 1.21
CHMP1A-205ENST00000548650 DUSP27Q5VZP5 1158 aa22.64■■□□□ 1.21
CHMP1A-205ENST00000548650 PLBD2Q8NHP8 589 aa22.64■■□□□ 1.21
CHMP1A-205ENST00000548650 TRMT112Q9UI30 125 aaKnown RBP22.64■■□□□ 1.21
CHMP1A-205ENST00000548650 ATP6V0A2Q9Y487 856 aa22.64■■□□□ 1.21
CHMP1A-205ENST00000548650 PASKQ96RG2 1323 aa22.63■■□□□ 1.21
CHMP1A-205ENST00000548650 PCNTO95613 3336 aa22.63■■□□□ 1.21
CHMP1A-205ENST00000548650 COL4A1P02462 1669 aa22.63■■□□□ 1.21
CHMP1A-205ENST00000548650 EPHX2P34913 555 aa22.63■■□□□ 1.21
CHMP1A-205ENST00000548650 LARGE2Q8N3Y3 721 aa22.63■■□□□ 1.21
CHMP1A-205ENST00000548650 IFT57Q9NWB7 429 aa22.63■■□□□ 1.21
CHMP1A-205ENST00000548650 CREBZFQ9NS37 354 aa22.62■■□□□ 1.21
CHMP1A-205ENST00000548650 EIF6P56537 245 aaKnown RBP22.61■■□□□ 1.21
CHMP1A-205ENST00000548650 EAPPQ56P03 285 aaPredicted RBP22.61■■□□□ 1.21
CHMP1A-205ENST00000548650 ISCA1Q9BUE6 129 aa22.61■■□□□ 1.21
CHMP1A-205ENST00000548650 HYPKQ9NX55 129 aa22.61■■□□□ 1.21
CHMP1A-205ENST00000548650 ANKRD13DQ6ZTN6 518 aa22.6■■□□□ 1.21
CHMP1A-205ENST00000548650 ZNF428Q96B54 188 aa22.6■■□□□ 1.21
CHMP1A-205ENST00000548650 PPIP5K2O43314 1243 aa22.59■■□□□ 1.21
CHMP1A-205ENST00000548650 GNAI1P63096 354 aa22.59■■□□□ 1.21
CHMP1A-205ENST00000548650 CALD1Q05682 793 aaKnown RBP22.59■■□□□ 1.21
CHMP1A-205ENST00000548650 AOC3Q16853 763 aa22.59■■□□□ 1.21
CHMP1A-205ENST00000548650 NIM1KQ8IY84 436 aa22.59■■□□□ 1.21
CHMP1A-205ENST00000548650 RTFDC1Q9BY42 306 aaPredicted RBP22.59■■□□□ 1.21
CHMP1A-205ENST00000548650 ITGBL1O95965 494 aaPredicted RBP22.58■■□□□ 1.21
CHMP1A-205ENST00000548650 SCNN1DP51172 638 aa22.58■■□□□ 1.21
CHMP1A-205ENST00000548650 GRAPQ13588 217 aa22.58■■□□□ 1.21
CHMP1A-205ENST00000548650 PNMA8AQ86V59 439 aaPredicted RBP22.58■■□□□ 1.21
CHMP1A-205ENST00000548650 GRAPLQ8TC17 118 aaPredicted RBP22.58■■□□□ 1.21
CHMP1A-205ENST00000548650 GJA3Q9Y6H8 435 aa22.58■■□□□ 1.21
CHMP1A-205ENST00000548650 ATP5J2-PTCD1G3V325 749 aa22.57■■□□□ 1.2
CHMP1A-205ENST00000548650 BBOX1O75936 387 aa22.57■■□□□ 1.2
CHMP1A-205ENST00000548650 DDX46Q7L014 1031 aaKnown RBP22.57■■□□□ 1.2
CHMP1A-205ENST00000548650 SP8Q8IXZ3 490 aa22.57■■□□□ 1.2
CHMP1A-205ENST00000548650 TMX4Q9H1E5 349 aaPredicted RBP22.57■■□□□ 1.2
CHMP1A-205ENST00000548650 CCDC184Q52MB2 194 aa22.56■■□□□ 1.2
CHMP1A-205ENST00000548650 FAM89AQ96GI7 184 aa22.56■■□□□ 1.2
CHMP1A-205ENST00000548650 VPS33BQ9H267 617 aa22.56■■□□□ 1.2
CHMP1A-205ENST00000548650 CNTNAP1P78357 1384 aa22.55■■□□□ 1.2
CHMP1A-205ENST00000548650 DPP8Q6V1X1 898 aaPredicted RBP22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms