RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 PLIN1O60240 522 aa10.4□□□□□ -0.74
VPS13D-212ENST00000543766 TPM1P09493 284 aa10.4□□□□□ -0.74
VPS13D-212ENST00000543766 RANBP1P43487 201 aa10.4□□□□□ -0.74
VPS13D-212ENST00000543766 ALKBH2Q6NS38 261 aa10.4□□□□□ -0.74
VPS13D-212ENST00000543766 LCA5Q86VQ0 697 aa10.4□□□□□ -0.74
VPS13D-212ENST00000543766 NEK9Q8TD19 979 aa10.4□□□□□ -0.74
VPS13D-212ENST00000543766 UTP6Q9NYH9 597 aaKnown RBP10.4□□□□□ -0.74
VPS13D-212ENST00000543766 FAN1Q9Y2M0 1017 aa10.4□□□□□ -0.74
VPS13D-212ENST00000543766 PARD3Q8TEW0 1356 aa10.4□□□□□ -0.74
VPS13D-212ENST00000543766 NPHP1O15259 732 aa10.4□□□□□ -0.75
VPS13D-212ENST00000543766 TRAK2O60296 914 aa10.4□□□□□ -0.75
VPS13D-212ENST00000543766 HIP1RO75146 1068 aa10.4□□□□□ -0.75
VPS13D-212ENST00000543766 IBSPP21815 317 aaPredicted RBP10.4□□□□□ -0.75
VPS13D-212ENST00000543766 CCDC65Q8IXS2 484 aa10.4□□□□□ -0.75
VPS13D-212ENST00000543766 RBM33Q96EV2 1170 aaKnown RBP10.4□□□□□ -0.75
VPS13D-212ENST00000543766 VEZTQ9HBM0 779 aa10.4□□□□□ -0.75
VPS13D-212ENST00000543766 IL16Q14005 1332 aa10.4□□□□□ -0.75
VPS13D-212ENST00000543766 EIF3AQ14152 1382 aaKnown RBP10.39□□□□□ -0.75
VPS13D-212ENST00000543766 EXOC5O00471 708 aa10.39□□□□□ -0.75
VPS13D-212ENST00000543766 SEC24BO95487 1268 aa10.39□□□□□ -0.75
VPS13D-212ENST00000543766 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.39□□□□□ -0.75
VPS13D-212ENST00000543766 JPH4Q96JJ6 628 aa10.39□□□□□ -0.75
VPS13D-212ENST00000543766 CD248Q9HCU0 757 aa10.39□□□□□ -0.75
VPS13D-212ENST00000543766 MAST1Q9Y2H9 1570 aa10.39□□□□□ -0.75
VPS13D-212ENST00000543766 HOXA2O43364 376 aa10.39□□□□□ -0.75
VPS13D-212ENST00000543766 KRT38O76015 456 aa10.39□□□□□ -0.75
VPS13D-212ENST00000543766 NGDNQ8NEJ9 315 aaKnown RBP10.39□□□□□ -0.75
VPS13D-212ENST00000543766 SPATS2LQ9NUQ6 558 aaKnown RBP10.39□□□□□ -0.75
VPS13D-212ENST00000543766 SLC26A4O43511 780 aa10.39□□□□□ -0.75
VPS13D-212ENST00000543766 SFMBT1Q9UHJ3 866 aa10.39□□□□□ -0.75
VPS13D-212ENST00000543766 CFAP69A5D8W1 941 aa10.38□□□□□ -0.75
VPS13D-212ENST00000543766 VCAM1P19320 739 aa10.38□□□□□ -0.75
VPS13D-212ENST00000543766 CDR1P51861 262 aa10.38□□□□□ -0.75
VPS13D-212ENST00000543766 NOLC1Q14978 699 aaKnown RBP eCLIP10.38□□□□□ -0.754e-7■■■■■ 35.6
VPS13D-212ENST00000543766 GAS2L3Q86XJ1 694 aa10.38□□□□□ -0.75
VPS13D-212ENST00000543766 TRDNQ13061 729 aa10.38□□□□□ -0.75
VPS13D-212ENST00000543766 SLC4A8Q2Y0W8 1093 aa10.38□□□□□ -0.75
VPS13D-212ENST00000543766 FAAH2Q6GMR7 532 aa10.38□□□□□ -0.75
VPS13D-212ENST00000543766 SMC5Q8IY18 1101 aa10.38□□□□□ -0.75
VPS13D-212ENST00000543766 MYO1HQ8N1T3 1032 aa10.38□□□□□ -0.75
VPS13D-212ENST00000543766 CDCA7LQ96GN5 454 aa10.38□□□□□ -0.75
VPS13D-212ENST00000543766 AGBL1Q96MI9 1066 aa10.38□□□□□ -0.75
VPS13D-212ENST00000543766 TBC1D2Q9BYX2 928 aa10.38□□□□□ -0.75
VPS13D-212ENST00000543766 GJA3Q9Y6H8 435 aa10.38□□□□□ -0.75
VPS13D-212ENST00000543766 CDC42BPBQ9Y5S2 1711 aa10.38□□□□□ -0.75
VPS13D-212ENST00000543766 TEKT1Q969V4 418 aa10.38□□□□□ -0.75
VPS13D-212ENST00000543766 DEUP1Q05D60 604 aa10.37□□□□□ -0.75
VPS13D-212ENST00000543766 DMPKQ09013 629 aa10.37□□□□□ -0.75
VPS13D-212ENST00000543766 WDR75Q8IWA0 830 aaKnown RBP10.37□□□□□ -0.75
VPS13D-212ENST00000543766 SREK1Q8WXA9 508 aaKnown RBP10.37□□□□□ -0.75
VPS13D-212ENST00000543766 CFAP74Q9C0B2 1584 aa10.37□□□□□ -0.75
VPS13D-212ENST00000543766 ATP2B1P20020 1258 aa10.37□□□□□ -0.75
VPS13D-212ENST00000543766 USP4Q13107 963 aa10.37□□□□□ -0.75
VPS13D-212ENST00000543766 RASA3Q14644 834 aa10.37□□□□□ -0.75
VPS13D-212ENST00000543766 DHX38Q92620 1227 aaKnown RBP10.37□□□□□ -0.75
VPS13D-212ENST00000543766 HPS3Q969F9 1004 aa10.37□□□□□ -0.75
VPS13D-212ENST00000543766 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.37□□□□□ -0.75
VPS13D-212ENST00000543766 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.37□□□□□ -0.75
VPS13D-212ENST00000543766 ZC3H4Q9UPT8 1303 aaKnown RBP10.37□□□□□ -0.75
VPS13D-212ENST00000543766 HS1BP3Q53T59 392 aa10.37□□□□□ -0.75
VPS13D-212ENST00000543766 CERKQ8TCT0 537 aa10.37□□□□□ -0.75
VPS13D-212ENST00000543766 TBC1D32Q96NH3 1257 aa10.37□□□□□ -0.75
VPS13D-212ENST00000543766 IBTKQ9P2D0 1353 aaPredicted RBP10.36□□□□□ -0.75
VPS13D-212ENST00000543766 FGFR1OPO95684 399 aaKnown RBP10.36□□□□□ -0.75
VPS13D-212ENST00000543766 PRIM1P49642 420 aaKnown RBP10.36□□□□□ -0.75
VPS13D-212ENST00000543766 PIP4K2BP78356 416 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 SWT1Q5T5J6 900 aaKnown RBP10.36□□□□□ -0.75
VPS13D-212ENST00000543766 TBC1D31Q96DN5 1066 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 INO80BQ9C086 356 aaPredicted RBP10.36□□□□□ -0.75
VPS13D-212ENST00000543766 TIMM44O43615 452 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 EIF3JO75822 258 aaKnown RBP10.36□□□□□ -0.75
VPS13D-212ENST00000543766 SMARCA1P28370 1054 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 PEX19P40855 299 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 POLR2FP61218 127 aaKnown RBP10.36□□□□□ -0.75
VPS13D-212ENST00000543766 DNAAF4Q8WXU2 420 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 MKL1Q969V6 931 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 SPATA17Q96L03 361 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 UIMC1Q96RL1 719 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 SH3GL3Q99963 347 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 IVNS1ABPQ9Y6Y0 642 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 UHRF1BP1Q6BDS2 1440 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 LINC00854A0A1B0GVQ3 168 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 BOLA2-SMG1P6H3BVE0 249 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 RWDD2BP57060 319 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 EVA1CP58658 441 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 CCDC173Q0VFZ6 552 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 CCDC178Q5BJE1 867 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 LARP1BQ659C4 914 aaKnown RBP10.36□□□□□ -0.75
VPS13D-212ENST00000543766 TBC1D7Q9P0N9 293 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 PZPP20742 1482 aa10.36□□□□□ -0.75
VPS13D-212ENST00000543766 ADD2P35612 726 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 MAGEA8P43361 318 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 ZNF131P52739 623 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 PANK3Q9H999 370 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 ZNF189O75820 626 aaPredicted RBP10.35□□□□□ -0.75
VPS13D-212ENST00000543766 FOSL1P15407 271 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 GJA8P48165 433 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 SNX1Q13596 522 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 DDX12PQ92771 950 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 RETREG1Q9H6L5 497 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms