RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 RBM27Q9P2N5 1060 aaKnown RBP11.01□□□□□ -0.65
CHD4-208ENST00000540960 PDZRN3Q9UPQ7 1066 aa11.01□□□□□ -0.65
CHD4-208ENST00000540960 TBC1D8O95759 1140 aa11□□□□□ -0.65
CHD4-208ENST00000540960 WDR43Q15061 677 aaKnown RBP eCLIP11□□□□□ -0.651e-6■□□□□ 9.3
CHD4-208ENST00000540960 CFAP53Q96M91 514 aa11□□□□□ -0.65
CHD4-208ENST00000540960 ZBTB1Q9Y2K1 713 aa11□□□□□ -0.65
CHD4-208ENST00000540960 CENPFP49454 3210 aa11□□□□□ -0.65
CHD4-208ENST00000540960 RBBP6Q7Z6E9 1792 aaKnown RBP11□□□□□ -0.65
CHD4-208ENST00000540960 POLR2AP24928 1970 aaKnown RBP10.99□□□□□ -0.65
CHD4-208ENST00000540960 HIRAP54198 1017 aaPredicted RBP10.99□□□□□ -0.65
CHD4-208ENST00000540960 CABP4P57796 275 aa10.99□□□□□ -0.65
CHD4-208ENST00000540960 ERICH6BQ5W0A0 696 aa10.99□□□□□ -0.65
CHD4-208ENST00000540960 MORC1Q86VD1 984 aa10.99□□□□□ -0.65
CHD4-208ENST00000540960 EYA1Q99502 592 aa10.99□□□□□ -0.65
CHD4-208ENST00000540960 GGNBP2Q9H3C7 697 aa10.99□□□□□ -0.65
CHD4-208ENST00000540960 PGAP2Q9UHJ9 254 aa10.99□□□□□ -0.65
CHD4-208ENST00000540960 HTTP42858 3142 aa10.99□□□□□ -0.65
CHD4-208ENST00000540960 CYP19A1P11511 503 aaPredicted RBP10.98□□□□□ -0.65
CHD4-208ENST00000540960 PPP2R1AP30153 589 aa10.98□□□□□ -0.65
CHD4-208ENST00000540960 ZNF157P51786 506 aaPredicted RBP10.98□□□□□ -0.65
CHD4-208ENST00000540960 EIF6P56537 245 aaKnown RBP10.98□□□□□ -0.65
CHD4-208ENST00000540960 NFATC2IPQ8NCF5 419 aa10.98□□□□□ -0.65
CHD4-208ENST00000540960 FLT4P35916 1363 aa10.98□□□□□ -0.65
CHD4-208ENST00000540960 ANKRD26Q9UPS8 1709 aa10.98□□□□□ -0.65
CHD4-208ENST00000540960 USP48Q86UV5 1035 aa10.97□□□□□ -0.65
CHD4-208ENST00000540960 JDP2Q8WYK2 163 aa10.97□□□□□ -0.65
CHD4-208ENST00000540960 CCDC102AQ96A19 550 aa10.97□□□□□ -0.65
CHD4-208ENST00000540960 ADARB2Q9NS39 739 aaKnown RBP10.97□□□□□ -0.65
CHD4-208ENST00000540960 GPRC5DQ9NZD1 345 aa10.97□□□□□ -0.65
CHD4-208ENST00000540960 EMILIN1Q9Y6C2 1016 aa10.97□□□□□ -0.65
CHD4-208ENST00000540960 SOX1O00570 391 aaPredicted RBP10.96□□□□□ -0.65
CHD4-208ENST00000540960 FYB1O15117 783 aa10.96□□□□□ -0.65
CHD4-208ENST00000540960 SLC51AQ86UW1 340 aa10.96□□□□□ -0.65
CHD4-208ENST00000540960 RTKN2Q8IZC4 609 aa10.96□□□□□ -0.65
CHD4-208ENST00000540960 SNED1Q8TER0 1413 aa10.95□□□□□ -0.66
CHD4-208ENST00000540960 SLC10A3P09131 477 aa10.95□□□□□ -0.66
CHD4-208ENST00000540960 CNGB1Q14028 1251 aaPredicted RBP10.95□□□□□ -0.66
CHD4-208ENST00000540960 CCDC184Q52MB2 194 aa10.95□□□□□ -0.66
CHD4-208ENST00000540960 CDC37L1Q7L3B6 337 aa10.95□□□□□ -0.66
CHD4-208ENST00000540960 PNNQ9H307 717 aaKnown RBP10.95□□□□□ -0.66
CHD4-208ENST00000540960 RAPGEFL1Q9UHV5 662 aa10.95□□□□□ -0.66
CHD4-208ENST00000540960 SHTN1A0MZ66 631 aa10.94□□□□□ -0.66
CHD4-208ENST00000540960 GPR25O00155 361 aa10.94□□□□□ -0.66
CHD4-208ENST00000540960 CANXP27824 592 aaKnown RBP10.94□□□□□ -0.66
CHD4-208ENST00000540960 NCBP3Q53F19 620 aaKnown RBP10.94□□□□□ -0.66
CHD4-208ENST00000540960 CNBD1Q8NA66 436 aa10.94□□□□□ -0.66
CHD4-208ENST00000540960 LRCH3Q96II8 777 aa10.94□□□□□ -0.66
CHD4-208ENST00000540960 CARD14Q9BXL6 1004 aa10.94□□□□□ -0.66
CHD4-208ENST00000540960 R3HDMLQ9H3Y0 253 aa10.94□□□□□ -0.66
CHD4-208ENST00000540960 GBA2Q9HCG7 927 aaPredicted RBP10.94□□□□□ -0.66
CHD4-208ENST00000540960 PRDM6Q9NQX0 595 aa10.94□□□□□ -0.66
CHD4-208ENST00000540960 VCANP13611 3396 aa10.93□□□□□ -0.66
CHD4-208ENST00000540960 TRPM4Q8TD43 1214 aa10.93□□□□□ -0.66
CHD4-208ENST00000540960 NUDCQ9Y266 331 aa10.93□□□□□ -0.66
CHD4-208ENST00000540960 TBC1D2BQ9UPU7 963 aa10.92□□□□□ -0.66
CHD4-208ENST00000540960 PPM1GO15355 546 aaPredicted RBP10.91□□□□□ -0.66
CHD4-208ENST00000540960 NPR1P16066 1061 aa10.91□□□□□ -0.66
CHD4-208ENST00000540960 COL9A1P20849 921 aa10.91□□□□□ -0.66
CHD4-208ENST00000540960 GMPSP49915 693 aaPredicted RBP10.91□□□□□ -0.66
CHD4-208ENST00000540960 EIF5P55010 431 aaKnown RBP10.91□□□□□ -0.66
CHD4-208ENST00000540960 INTS3Q68E01 1043 aaKnown RBP10.91□□□□□ -0.66
CHD4-208ENST00000540960 PSMD1Q99460 953 aa10.91□□□□□ -0.66
CHD4-208ENST00000540960 PRO3102Q9H379 93 aa10.91□□□□□ -0.66
CHD4-208ENST00000540960 LAMA3Q16787 3333 aa10.91□□□□□ -0.66
CHD4-208ENST00000540960 SCN7AQ01118 1682 aa10.91□□□□□ -0.66
CHD4-208ENST00000540960 LAMB4A4D0S4 1761 aa10.9□□□□□ -0.66
CHD4-208ENST00000540960 NPHP1O15259 732 aa10.9□□□□□ -0.66
CHD4-208ENST00000540960 MTHFSP49914 203 aa10.9□□□□□ -0.66
CHD4-208ENST00000540960 ST5P78524 1137 aa10.9□□□□□ -0.66
CHD4-208ENST00000540960 SLC39A6Q13433 755 aa10.9□□□□□ -0.66
CHD4-208ENST00000540960 RASAL3Q86YV0 1011 aa10.9□□□□□ -0.66
CHD4-208ENST00000540960 LARGE2Q8N3Y3 721 aa10.9□□□□□ -0.66
CHD4-208ENST00000540960 C2orf69Q8N8R5 385 aa10.9□□□□□ -0.66
CHD4-208ENST00000540960 ZC3H15Q8WU90 426 aaKnown RBP10.9□□□□□ -0.66
CHD4-208ENST00000540960 KIF24Q5T7B8 1368 aa10.9□□□□□ -0.67
CHD4-208ENST00000540960 SPTBN5Q9NRC6 3674 aaKnown RBP10.89□□□□□ -0.67
CHD4-208ENST00000540960 ADM5C9JUS6 153 aa10.89□□□□□ -0.67
CHD4-208ENST00000540960 HSP90AB1P08238 724 aaKnown RBP10.89□□□□□ -0.67
CHD4-208ENST00000540960 CXCL9Q07325 125 aa10.89□□□□□ -0.67
CHD4-208ENST00000540960 ZNF530Q6P9A1 599 aaPredicted RBP10.89□□□□□ -0.67
CHD4-208ENST00000540960 SETDB2Q96T68 719 aa10.89□□□□□ -0.67
CHD4-208ENST00000540960 KLRG2A4D1S0 409 aaPredicted RBP10.88□□□□□ -0.67
CHD4-208ENST00000540960 FKTNO75072 461 aa10.88□□□□□ -0.67
CHD4-208ENST00000540960 TRIM17Q9Y577 477 aa10.88□□□□□ -0.67
CHD4-208ENST00000540960 NEFMP07197 916 aa10.87□□□□□ -0.67
CHD4-208ENST00000540960 Q7L0L9 218 aa10.87□□□□□ -0.67
CHD4-208ENST00000540960 ADAMTS8Q9UP79 889 aa10.87□□□□□ -0.67
CHD4-208ENST00000540960 EGFRP00533 1210 aa10.86□□□□□ -0.67
CHD4-208ENST00000540960 NOM1Q5C9Z4 860 aaKnown RBP10.86□□□□□ -0.67
CHD4-208ENST00000540960 OTOP1Q7RTM1 612 aa10.86□□□□□ -0.67
CHD4-208ENST00000540960 KRT26Q7Z3Y9 468 aa10.86□□□□□ -0.67
CHD4-208ENST00000540960 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.86□□□□□ -0.67
CHD4-208ENST00000540960 NIM1KQ8IY84 436 aa10.86□□□□□ -0.67
CHD4-208ENST00000540960 REM2Q8IYK8 340 aaPredicted RBP10.86□□□□□ -0.67
CHD4-208ENST00000540960 ZNF330Q9Y3S2 320 aaPredicted RBP10.86□□□□□ -0.67
CHD4-208ENST00000540960 ERBB4Q15303 1308 aa10.85□□□□□ -0.67
CHD4-208ENST00000540960 AOC3Q16853 763 aa10.85□□□□□ -0.67
CHD4-208ENST00000540960 PLEKHO1Q53GL0 409 aaPredicted RBP10.85□□□□□ -0.67
CHD4-208ENST00000540960 SAMD7Q7Z3H4 446 aa10.85□□□□□ -0.67
CHD4-208ENST00000540960 CNOT7Q9UIV1 285 aaKnown RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms