RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 FANCIQ9NVI1 1328 aa18.37■□□□□ 0.53
USP28-209ENST00000540925 HOXA10P31260 410 aaPredicted RBP18.36■□□□□ 0.53
USP28-209ENST00000540925 RASSF7Q02833 373 aa18.36■□□□□ 0.53
USP28-209ENST00000540925 C9orf131Q5VYM1 1079 aa18.36■□□□□ 0.53
USP28-209ENST00000540925 PPP1R42Q7Z4L9 355 aa18.36■□□□□ 0.53
USP28-209ENST00000540925 ISCA1Q9BUE6 129 aa18.36■□□□□ 0.53
USP28-209ENST00000540925 PHAXQ9H814 394 aaKnown RBP18.36■□□□□ 0.53
USP28-209ENST00000540925 SNED1Q8TER0 1413 aa18.35■□□□□ 0.53
USP28-209ENST00000540925 C21orf2O43822 256 aa18.35■□□□□ 0.53
USP28-209ENST00000540925 CCDC30Q5VVM6 783 aa18.35■□□□□ 0.53
USP28-209ENST00000540925 C3orf67Q6ZVT6 689 aa18.35■□□□□ 0.53
USP28-209ENST00000540925 UTP14AQ9BVJ6 771 aaKnown RBP18.35■□□□□ 0.53
USP28-209ENST00000540925 CHMP4AQ9BY43 222 aa18.35■□□□□ 0.53
USP28-209ENST00000540925 CACNA1SQ13698 1873 aa18.35■□□□□ 0.53
USP28-209ENST00000540925 LTBP3Q9NS15 1303 aa18.34■□□□□ 0.53
USP28-209ENST00000540925 CCER2I3L3R5 266 aa18.34■□□□□ 0.53
USP28-209ENST00000540925 GTF2E1P29083 439 aaPredicted RBP18.34■□□□□ 0.53
USP28-209ENST00000540925 TRIM28Q13263 835 aaKnown RBP18.34■□□□□ 0.53
USP28-209ENST00000540925 TWISTNBQ3B726 338 aaPredicted RBP18.34■□□□□ 0.53
USP28-209ENST00000540925 SALL2Q9Y467 1007 aaPredicted RBP18.34■□□□□ 0.53
USP28-209ENST00000540925 ZC3H4Q9UPT8 1303 aaKnown RBP18.32■□□□□ 0.52
USP28-209ENST00000540925 LMNB1P20700 586 aa18.32■□□□□ 0.52
USP28-209ENST00000540925 SYNE4Q8N205 404 aa18.32■□□□□ 0.52
USP28-209ENST00000540925 RNF181Q9P0P0 153 aa18.32■□□□□ 0.52
USP28-209ENST00000540925 LAMB2P55268 1798 aa18.32■□□□□ 0.52
USP28-209ENST00000540925 ALDH1B1P30837 517 aa18.31■□□□□ 0.52
USP28-209ENST00000540925 SOGA3Q5TF21 947 aa18.31■□□□□ 0.52
USP28-209ENST00000540925 SH3TC1Q8TE82 1336 aa18.3■□□□□ 0.52
USP28-209ENST00000540925 DDX60Q8IY21 1712 aaKnown RBP18.3■□□□□ 0.52
USP28-209ENST00000540925 VAMP4O75379 141 aa18.3■□□□□ 0.52
USP28-209ENST00000540925 CRAMP1Q96RY5 1269 aa18.3■□□□□ 0.52
USP28-209ENST00000540925 GPBP1L1Q9HC44 474 aaPredicted RBP18.3■□□□□ 0.52
USP28-209ENST00000540925 ZNF219Q9P2Y4 722 aaPredicted RBP18.3■□□□□ 0.52
USP28-209ENST00000540925 TRMT112Q9UI30 125 aaKnown RBP18.3■□□□□ 0.52
USP28-209ENST00000540925 DICER1Q9UPY3 1922 aaKnown RBP18.29■□□□□ 0.52
USP28-209ENST00000540925 CCDC88AQ3V6T2 1871 aa18.29■□□□□ 0.52
USP28-209ENST00000540925 ATP5J2-PTCD1G3V325 749 aa18.29■□□□□ 0.52
USP28-209ENST00000540925 EXOSC9Q06265 439 aaKnown RBP18.29■□□□□ 0.52
USP28-209ENST00000540925 GOLGA2Q08379 1002 aa18.29■□□□□ 0.52
USP28-209ENST00000540925 OLFM4Q6UX06 510 aa18.29■□□□□ 0.52
USP28-209ENST00000540925 TIAM2Q8IVF5 1701 aa18.29■□□□□ 0.52
USP28-209ENST00000540925 CCDC93Q567U6 631 aa18.28■□□□□ 0.52
USP28-209ENST00000540925 ZNF526Q8TF50 670 aaPredicted RBP18.28■□□□□ 0.52
USP28-209ENST00000540925 NLRP3Q96P20 1036 aa18.28■□□□□ 0.52
USP28-209ENST00000540925 TAOK3Q9H2K8 898 aa18.28■□□□□ 0.52
USP28-209ENST00000540925 KIF3CO14782 793 aa18.27■□□□□ 0.52
USP28-209ENST00000540925 HCLS1P14317 486 aaPredicted RBP18.27■□□□□ 0.52
USP28-209ENST00000540925 G2E3Q7L622 706 aa18.27■□□□□ 0.52
USP28-209ENST00000540925 RIC3Q7Z5B4 369 aa18.27■□□□□ 0.52
USP28-209ENST00000540925 RPGRQ92834 1020 aaKnown RBP18.27■□□□□ 0.52
USP28-209ENST00000540925 METTL22Q9BUU2 404 aaPredicted RBP18.27■□□□□ 0.52
USP28-209ENST00000540925 STK31Q9BXU1 1019 aa18.27■□□□□ 0.52
USP28-209ENST00000540925 CACNA1FO60840 1977 aa18.27■□□□□ 0.52
USP28-209ENST00000540925 TCERG1O14776 1098 aaKnown RBP18.26■□□□□ 0.51
USP28-209ENST00000540925 KSR2Q6VAB6 950 aa18.26■□□□□ 0.51
USP28-209ENST00000540925 RBM17Q96I25 401 aaKnown RBP18.26■□□□□ 0.51
USP28-209ENST00000540925 MYH16Q9H6N6 1097 aa18.26■□□□□ 0.51
USP28-209ENST00000540925 ABCC4O15439 1325 aa18.25■□□□□ 0.51
USP28-209ENST00000540925 DDX58O95786 925 aaKnown RBP18.25■□□□□ 0.51
USP28-209ENST00000540925 SLC4A2P04920 1241 aa18.25■□□□□ 0.51
USP28-209ENST00000540925 FKBP4Q02790 459 aaKnown RBP eCLIP18.25■□□□□ 0.51
USP28-209ENST00000540925 SLC51AQ86UW1 340 aa18.25■□□□□ 0.51
USP28-209ENST00000540925 RTKN2Q8IZC4 609 aa18.25■□□□□ 0.51
USP28-209ENST00000540925 CCDC191Q8NCU4 936 aa18.25■□□□□ 0.51
USP28-209ENST00000540925 FAM89AQ96GI7 184 aa18.25■□□□□ 0.51
USP28-209ENST00000540925 MYD88Q99836 296 aa18.25■□□□□ 0.51
USP28-209ENST00000540925 PI4KAP2A4QPH2 592 aa18.24■□□□□ 0.51
USP28-209ENST00000540925 IGKV5-2P06315 115 aa18.24■□□□□ 0.51
USP28-209ENST00000540925 SF3B3Q15393 1217 aaKnown RBP18.24■□□□□ 0.51
USP28-209ENST00000540925 CC2D2BQ6DHV5 1058 aa18.24■□□□□ 0.51
USP28-209ENST00000540925 PI4KAP1Q8N8J0 262 aa18.24■□□□□ 0.51
USP28-209ENST00000540925 ZBTB38Q8NAP3 1195 aaPredicted RBP18.24■□□□□ 0.51
USP28-209ENST00000540925 ZNF428Q96B54 188 aa18.24■□□□□ 0.51
USP28-209ENST00000540925 MAP3K2Q9Y2U5 619 aa18.24■□□□□ 0.51
USP28-209ENST00000540925 FLIIQ13045 1269 aa18.23■□□□□ 0.51
USP28-209ENST00000540925 PSMD1Q99460 953 aa18.23■□□□□ 0.51
USP28-209ENST00000540925 NMRK2Q9NPI5 230 aa18.23■□□□□ 0.51
USP28-209ENST00000540925 COL4A1P02462 1669 aa18.22■□□□□ 0.51
USP28-209ENST00000540925 GLTPD2A6NH11 291 aa18.22■□□□□ 0.51
USP28-209ENST00000540925 PPEF1O14829 653 aaPredicted RBP18.22■□□□□ 0.51
USP28-209ENST00000540925 HSPA6P17066 643 aa18.22■□□□□ 0.51
USP28-209ENST00000540925 PCCAP05165 728 aaPredicted RBP18.21■□□□□ 0.51
USP28-209ENST00000540925 GRIPAP1Q4V328 841 aa18.21■□□□□ 0.51
USP28-209ENST00000540925 CWC25Q9NXE8 425 aaPredicted RBP18.21■□□□□ 0.51
USP28-209ENST00000540925 ATP6V0A2Q9Y487 856 aa18.21■□□□□ 0.51
USP28-209ENST00000540925 KDM2BQ8NHM5 1336 aa18.21■□□□□ 0.51
USP28-209ENST00000540925 LRRC37AA6NMS7 1700 aa18.2■□□□□ 0.5
USP28-209ENST00000540925 TAF1P21675 1872 aa18.2■□□□□ 0.5
USP28-209ENST00000540925 COL4A5P29400 1685 aa18.2■□□□□ 0.5
USP28-209ENST00000540925 IRS4O14654 1257 aaPredicted RBP18.2■□□□□ 0.5
USP28-209ENST00000540925 BBOX1O75936 387 aa18.2■□□□□ 0.5
USP28-209ENST00000540925 SLFN5Q08AF3 891 aa18.2■□□□□ 0.5
USP28-209ENST00000540925 GRAPQ13588 217 aa18.2■□□□□ 0.5
USP28-209ENST00000540925 TRMT2AQ8IZ69 625 aaKnown RBP18.2■□□□□ 0.5
USP28-209ENST00000540925 GRAPLQ8TC17 118 aaPredicted RBP18.2■□□□□ 0.5
USP28-209ENST00000540925 ZNF277Q9NRM2 450 aaPredicted RBP18.2■□□□□ 0.5
USP28-209ENST00000540925 WDR90Q96KV7 1748 aa18.2■□□□□ 0.5
USP28-209ENST00000540925 E9PSI1 815 aa18.19■□□□□ 0.5
USP28-209ENST00000540925 RTL5Q5HYW3 569 aaPredicted RBP18.19■□□□□ 0.5
USP28-209ENST00000540925 DIEXFQ68CQ4 756 aaKnown RBP18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms