RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 USP48Q86UV5 1035 aa20.37■□□□□ 0.85
USP28-208ENST00000540438 HSP90AB4PQ58FF6 505 aa20.37■□□□□ 0.85
USP28-208ENST00000540438 BRD1O95696 1058 aa20.36■□□□□ 0.85
USP28-208ENST00000540438 NBPF26B4DH59 902 aa20.36■□□□□ 0.85
USP28-208ENST00000540438 PLCB2Q00722 1185 aa20.36■□□□□ 0.85
USP28-208ENST00000540438 HSP90AB3PQ58FF7 597 aa20.36■□□□□ 0.85
USP28-208ENST00000540438 NBPF14Q5TI25 921 aa20.36■□□□□ 0.85
USP28-208ENST00000540438 NBPF10Q6P3W6 841 aaKnown RBP20.36■□□□□ 0.85
USP28-208ENST00000540438 SYNE4Q8N205 404 aa20.36■□□□□ 0.85
USP28-208ENST00000540438 NBPF15Q8N660 670 aa20.36■□□□□ 0.85
USP28-208ENST00000540438 PDRG1Q9NUG6 133 aa20.36■□□□□ 0.85
USP28-208ENST00000540438 A0A0G2JLW4 131 aa20.35■□□□□ 0.85
USP28-208ENST00000540438 SNRPA1P09661 255 aaKnown RBP20.35■□□□□ 0.85
USP28-208ENST00000540438 DBNLQ9UJU6 430 aaKnown RBP20.35■□□□□ 0.85
USP28-208ENST00000540438 NAP1L2Q9ULW6 460 aaPredicted RBP20.35■□□□□ 0.85
USP28-208ENST00000540438 SNRKQ9NRH2 765 aa20.35■□□□□ 0.85
USP28-208ENST00000540438 SMC3Q9UQE7 1217 aa20.35■□□□□ 0.85
USP28-208ENST00000540438 SYT1P21579 422 aa20.34■□□□□ 0.85
USP28-208ENST00000540438 GPATCH3Q96I76 525 aa20.34■□□□□ 0.85
USP28-208ENST00000540438 METTL22Q9BUU2 404 aaPredicted RBP20.34■□□□□ 0.85
USP28-208ENST00000540438 CUL4AQ13619 759 aa20.34■□□□□ 0.85
USP28-208ENST00000540438 GJB2P29033 226 aa20.33■□□□□ 0.85
USP28-208ENST00000540438 SYTL4Q96C24 671 aaPredicted RBP20.33■□□□□ 0.85
USP28-208ENST00000540438 FMNL2Q96PY5 1086 aa20.33■□□□□ 0.85
USP28-208ENST00000540438 ME3Q16798 604 aa20.33■□□□□ 0.84
USP28-208ENST00000540438 ESPNB1AK53 854 aa20.32■□□□□ 0.84
USP28-208ENST00000540438 CREB3L3Q68CJ9 461 aa20.32■□□□□ 0.84
USP28-208ENST00000540438 CHST3Q7LGC8 479 aa20.32■□□□□ 0.84
USP28-208ENST00000540438 LIMCH1Q9UPQ0 1083 aa20.32■□□□□ 0.84
USP28-208ENST00000540438 ANAPC15P60006 121 aa20.32■□□□□ 0.84
USP28-208ENST00000540438 PTPN12Q05209 780 aaKnown RBP20.32■□□□□ 0.84
USP28-208ENST00000540438 LRRC24Q50LG9 513 aa20.32■□□□□ 0.84
USP28-208ENST00000540438 PUS3Q9BZE2 481 aaKnown RBP20.32■□□□□ 0.84
USP28-208ENST00000540438 TPCN1Q9ULQ1 816 aa20.32■□□□□ 0.84
USP28-208ENST00000540438 FAM177BA6PVY3 158 aa20.31■□□□□ 0.84
USP28-208ENST00000540438 EVA1CP58658 441 aa20.31■□□□□ 0.84
USP28-208ENST00000540438 DNM1Q05193 864 aaKnown RBP20.31■□□□□ 0.84
USP28-208ENST00000540438 EVI5LQ96CN4 794 aa20.31■□□□□ 0.84
USP28-208ENST00000540438 TTC14Q96N46 770 aa20.31■□□□□ 0.84
USP28-208ENST00000540438 MTX1Q13505 466 aa20.31■□□□□ 0.84
USP28-208ENST00000540438 DDX11Q96FC9 970 aa20.31■□□□□ 0.84
USP28-208ENST00000540438 TCHHQ07283 1943 aa20.3■□□□□ 0.84
USP28-208ENST00000540438 CCDC171Q6TFL3 1326 aa20.3■□□□□ 0.84
USP28-208ENST00000540438 DCAF5Q96JK2 942 aa20.3■□□□□ 0.84
USP28-208ENST00000540438 GPTP24298 496 aa20.3■□□□□ 0.84
USP28-208ENST00000540438 ST3GAL1Q11201 340 aa20.3■□□□□ 0.84
USP28-208ENST00000540438 BRINP3Q76B58 766 aa20.3■□□□□ 0.84
USP28-208ENST00000540438 CYP46A1Q9Y6A2 500 aa20.3■□□□□ 0.84
USP28-208ENST00000540438 MED1Q15648 1581 aaPredicted RBP20.3■□□□□ 0.84
USP28-208ENST00000540438 TTC41PQ6P2S7 1318 aa20.3■□□□□ 0.84
USP28-208ENST00000540438 TFIP11Q9UBB9 837 aaKnown RBP20.29■□□□□ 0.84
USP28-208ENST00000540438 HEG1Q9ULI3 1381 aa20.29■□□□□ 0.84
USP28-208ENST00000540438 GOLIM4O00461 696 aa20.29■□□□□ 0.84
USP28-208ENST00000540438 RUFY2Q8WXA3 655 aa20.29■□□□□ 0.84
USP28-208ENST00000540438 ZNF335Q9H4Z2 1342 aaPredicted RBP20.29■□□□□ 0.84
USP28-208ENST00000540438 PXDNLA1KZ92 1463 aa20.29■□□□□ 0.84
USP28-208ENST00000540438 KDM4AO75164 1064 aa20.29■□□□□ 0.84
USP28-208ENST00000540438 CLEC17AQ6ZS10 378 aa20.29■□□□□ 0.84
USP28-208ENST00000540438 ANP32BQ92688 251 aaKnown RBP20.29■□□□□ 0.84
USP28-208ENST00000540438 SLC27A2O14975 620 aa20.28■□□□□ 0.84
USP28-208ENST00000540438 STX6O43752 255 aa20.28■□□□□ 0.84
USP28-208ENST00000540438 MCM2P49736 904 aa20.28■□□□□ 0.84
USP28-208ENST00000540438 VPS53Q5VIR6 699 aa20.28■□□□□ 0.84
USP28-208ENST00000540438 RAB11FIP4Q86YS3 637 aa20.28■□□□□ 0.84
USP28-208ENST00000540438 ERC1Q8IUD2 1116 aa20.28■□□□□ 0.84
USP28-208ENST00000540438 RPAP1Q9BWH6 1393 aaPredicted RBP20.28■□□□□ 0.84
USP28-208ENST00000540438 ZKSCAN1P17029 563 aaPredicted RBP20.28■□□□□ 0.84
USP28-208ENST00000540438 TNNI3KQ59H18 835 aa20.28■□□□□ 0.84
USP28-208ENST00000540438 LRP10Q7Z4F1 713 aa20.28■□□□□ 0.84
USP28-208ENST00000540438 CADPS2Q86UW7 1296 aa20.28■□□□□ 0.84
USP28-208ENST00000540438 ZCRB1Q8TBF4 217 aaKnown RBP20.28■□□□□ 0.84
USP28-208ENST00000540438 FPGT-TNNI3KV9GXZ4 949 aa20.28■□□□□ 0.84
USP28-208ENST00000540438 AOX1Q06278 1338 aa20.28■□□□□ 0.84
USP28-208ENST00000540438 CEBPZQ03701 1054 aaKnown RBP20.27■□□□□ 0.84
USP28-208ENST00000540438 FAM89AQ96GI7 184 aa20.27■□□□□ 0.84
USP28-208ENST00000540438 NECTIN1Q15223 517 aa20.27■□□□□ 0.83
USP28-208ENST00000540438 MST1RQ04912 1400 aa20.26■□□□□ 0.83
USP28-208ENST00000540438 ASAP1Q9ULH1 1129 aa20.26■□□□□ 0.83
USP28-208ENST00000540438 PI16Q6UXB8 463 aa20.26■□□□□ 0.83
USP28-208ENST00000540438 JAK2O60674 1132 aa20.25■□□□□ 0.83
USP28-208ENST00000540438 FKBP4Q02790 459 aaKnown RBP eCLIP20.25■□□□□ 0.83
USP28-208ENST00000540438 ZNF830Q96NB3 372 aaPredicted RBP20.25■□□□□ 0.83
USP28-208ENST00000540438 KDM3BQ7LBC6 1761 aa20.25■□□□□ 0.83
USP28-208ENST00000540438 CAMK4Q16566 473 aa20.25■□□□□ 0.83
USP28-208ENST00000540438 GIMAP6Q6P9H5 292 aa20.25■□□□□ 0.83
USP28-208ENST00000540438 CACNA1FO60840 1977 aa20.25■□□□□ 0.83
USP28-208ENST00000540438 SPATA31A3Q5VYP0 1347 aa20.25■□□□□ 0.83
USP28-208ENST00000540438 ZSCAN22P10073 491 aaPredicted RBP20.24■□□□□ 0.83
USP28-208ENST00000540438 FGD1P98174 961 aa20.24■□□□□ 0.83
USP28-208ENST00000540438 WDR33Q9C0J8 1336 aaKnown RBP20.24■□□□□ 0.83
USP28-208ENST00000540438 COL15A1P39059 1388 aa20.24■□□□□ 0.83
USP28-208ENST00000540438 HSP90B1P14625 803 aaKnown RBP20.24■□□□□ 0.83
USP28-208ENST00000540438 RFX5P48382 616 aaPredicted RBP20.24■□□□□ 0.83
USP28-208ENST00000540438 CDC37L1Q7L3B6 337 aa20.24■□□□□ 0.83
USP28-208ENST00000540438 CHMP4AQ9BY43 222 aa20.24■□□□□ 0.83
USP28-208ENST00000540438 LARP1BQ659C4 914 aaKnown RBP20.23■□□□□ 0.83
USP28-208ENST00000540438 BLOC1S2Q6QNY1 142 aa20.23■□□□□ 0.83
USP28-208ENST00000540438 INTS4Q96HW7 963 aaKnown RBP20.23■□□□□ 0.83
USP28-208ENST00000540438 ZNF445P59923 1031 aa20.22■□□□□ 0.83
USP28-208ENST00000540438 HAND2P61296 217 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms