RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 NEDD9Q14511 834 aa14.49□□□□□ -0.09
USP3-203ENST00000538686 RABGGTAQ92696 567 aa14.49□□□□□ -0.09
USP3-203ENST00000538686 FAM212AQ96EL1 285 aa14.49□□□□□ -0.09
USP3-203ENST00000538686 CLSTN2Q9H4D0 955 aa14.49□□□□□ -0.09
USP3-203ENST00000538686 C1orf115Q9H7X2 142 aa14.49□□□□□ -0.09
USP3-203ENST00000538686 ZNF777Q9ULD5 760 aaPredicted RBP14.49□□□□□ -0.09
USP3-203ENST00000538686 SMC3Q9UQE7 1217 aa14.49□□□□□ -0.09
USP3-203ENST00000538686 ERVK-7P63135 1459 aa14.48□□□□□ -0.09
USP3-203ENST00000538686 KRT85P78386 507 aa14.48□□□□□ -0.09
USP3-203ENST00000538686 NUTM1Q86Y26 1132 aa14.48□□□□□ -0.09
USP3-203ENST00000538686 POTEDQ86YR6 584 aa14.48□□□□□ -0.09
USP3-203ENST00000538686 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.48□□□□□ -0.09
USP3-203ENST00000538686 LRRN4CLQ8ND94 238 aa14.48□□□□□ -0.09
USP3-203ENST00000538686 HNRNPLLQ8WVV9 542 aaKnown RBP14.48□□□□□ -0.09
USP3-203ENST00000538686 MIEF2Q96C03 454 aa14.48□□□□□ -0.09
USP3-203ENST00000538686 FAM210AQ96ND0 272 aa14.48□□□□□ -0.09
USP3-203ENST00000538686 VPS18Q9P253 973 aa14.48□□□□□ -0.09
USP3-203ENST00000538686 TRAK1Q9UPV9 953 aa14.48□□□□□ -0.09
USP3-203ENST00000538686 SPHKAPQ2M3C7 1700 aa14.48□□□□□ -0.09
USP3-203ENST00000538686 TMPOP42166 694 aaKnown RBP14.48□□□□□ -0.09
USP3-203ENST00000538686 BIRC2Q13490 618 aa14.48□□□□□ -0.09
USP3-203ENST00000538686 ESYT1Q9BSJ8 1104 aa14.48□□□□□ -0.09
USP3-203ENST00000538686 STK26Q9P289 416 aa14.48□□□□□ -0.09
USP3-203ENST00000538686 YTHDC2Q9H6S0 1430 aaKnown RBP14.48□□□□□ -0.09
USP3-203ENST00000538686 POTEB2H3BUK9 544 aa14.47□□□□□ -0.09
USP3-203ENST00000538686 U2AF1L5P0DN76 240 aaPredicted RBP14.47□□□□□ -0.09
USP3-203ENST00000538686 HNRNPH1P31943 449 aaKnown RBP14.47□□□□□ -0.09
USP3-203ENST00000538686 TUBB4BP68371 445 aa14.47□□□□□ -0.09
USP3-203ENST00000538686 U2AF1Q01081 240 aaKnown RBP eCLIP14.47□□□□□ -0.09
USP3-203ENST00000538686 DNM1Q05193 864 aaKnown RBP14.47□□□□□ -0.09
USP3-203ENST00000538686 APOBRQ0VD83 1088 aa14.47□□□□□ -0.09
USP3-203ENST00000538686 E4F1Q66K89 784 aaPredicted RBP14.47□□□□□ -0.09
USP3-203ENST00000538686 HDXQ7Z353 690 aa14.47□□□□□ -0.09
USP3-203ENST00000538686 ITFG2Q969R8 447 aa14.47□□□□□ -0.09
USP3-203ENST00000538686 NBPF3Q9H094 633 aa14.47□□□□□ -0.09
USP3-203ENST00000538686 H3BQF6 201 aa14.46□□□□□ -0.09
USP3-203ENST00000538686 LONRF2Q1L5Z9 754 aa14.46□□□□□ -0.09
USP3-203ENST00000538686 HOMER1Q86YM7 354 aa14.46□□□□□ -0.09
USP3-203ENST00000538686 RPAP2Q8IXW5 612 aaPredicted RBP14.46□□□□□ -0.09
USP3-203ENST00000538686 API5Q9BZZ5 524 aaKnown RBP14.46□□□□□ -0.09
USP3-203ENST00000538686 ACBD3Q9H3P7 528 aa14.46□□□□□ -0.09
USP3-203ENST00000538686 TRIM35Q9UPQ4 493 aa14.46□□□□□ -0.09
USP3-203ENST00000538686 DDR1Q08345 913 aa14.46□□□□□ -0.09
USP3-203ENST00000538686 LRRC31Q6UY01 552 aa14.46□□□□□ -0.09
USP3-203ENST00000538686 NOL8Q76FK4 1167 aaKnown RBP14.46□□□□□ -0.09
USP3-203ENST00000538686 FAM71BQ8TC56 605 aa14.46□□□□□ -0.09
USP3-203ENST00000538686 NPHP3Q7Z494 1330 aa14.46□□□□□ -0.1
USP3-203ENST00000538686 NSD2O96028 1365 aa14.46□□□□□ -0.1
USP3-203ENST00000538686 ABCA6Q8N139 1617 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 CD109Q6YHK3 1445 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 GOLGA6L4A6NEF3 574 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 ELF1P32519 619 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 MTHFSP49914 203 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 CCDC30Q5VVM6 783 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 ANKRD44Q8N8A2 993 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 MPHOSPH8Q99549 860 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 SCAND2PQ9GZW5 306 aaPredicted RBP14.45□□□□□ -0.1
USP3-203ENST00000538686 MSH6P52701 1360 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 SBNO2Q9Y2G9 1366 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 PRG4Q92954 1404 aaPredicted RBP14.45□□□□□ -0.1
USP3-203ENST00000538686 NSD3Q9BZ95 1437 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 IQCB1Q15051 598 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 TPRNQ4KMQ1 711 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 HSP90B2PQ58FF3 399 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 TEX11Q8IYF3 940 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 DNAJC25Q9H1X3 360 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 VEZTQ9HBM0 779 aa14.45□□□□□ -0.1
USP3-203ENST00000538686 ANKRD33BA6NCL7 494 aa14.44□□□□□ -0.1
USP3-203ENST00000538686 ERLIN1O75477 346 aa14.44□□□□□ -0.1
USP3-203ENST00000538686 PSME1Q06323 249 aa14.44□□□□□ -0.1
USP3-203ENST00000538686 ARID5BQ14865 1188 aa14.44□□□□□ -0.1
USP3-203ENST00000538686 GORABQ5T7V8 394 aa14.44□□□□□ -0.1
USP3-203ENST00000538686 RSRC2Q7L4I2 434 aaKnown RBP14.44□□□□□ -0.1
USP3-203ENST00000538686 CKAP2LQ8IYA6 745 aa14.44□□□□□ -0.1
USP3-203ENST00000538686 MRPL50Q8N5N7 158 aaKnown RBP14.44□□□□□ -0.1
USP3-203ENST00000538686 GOLGA1Q92805 767 aa14.44□□□□□ -0.1
USP3-203ENST00000538686 CARD6Q9BX69 1037 aa14.44□□□□□ -0.1
USP3-203ENST00000538686 DACT1Q9NYF0 836 aa14.44□□□□□ -0.1
USP3-203ENST00000538686 LIMCH1Q9UPQ0 1083 aa14.44□□□□□ -0.1
USP3-203ENST00000538686 MTMR6Q9Y217 621 aa14.44□□□□□ -0.1
USP3-203ENST00000538686 ARID3CA6NKF2 412 aa14.43□□□□□ -0.1
USP3-203ENST00000538686 CTAGE5O15320 804 aa14.43□□□□□ -0.1
USP3-203ENST00000538686 GCFC2P16383 781 aaKnown RBP14.43□□□□□ -0.1
USP3-203ENST00000538686 RDXP35241 583 aaKnown RBP14.43□□□□□ -0.1
USP3-203ENST00000538686 CRYMQ14894 314 aa14.43□□□□□ -0.1
USP3-203ENST00000538686 CAMK4Q16566 473 aa14.43□□□□□ -0.1
USP3-203ENST00000538686 FOXR1Q6PIV2 292 aa14.43□□□□□ -0.1
USP3-203ENST00000538686 C16orf71Q8IYS4 520 aaPredicted RBP14.43□□□□□ -0.1
USP3-203ENST00000538686 BECN2A8MW95 431 aa14.43□□□□□ -0.1
USP3-203ENST00000538686 URI1O94763 535 aaPredicted RBP14.43□□□□□ -0.1
USP3-203ENST00000538686 STX1AQ16623 288 aa14.43□□□□□ -0.1
USP3-203ENST00000538686 FAXDC2Q96IV6 333 aa14.43□□□□□ -0.1
USP3-203ENST00000538686 PARD6BQ9BYG5 372 aa14.43□□□□□ -0.1
USP3-203ENST00000538686 PALD1Q9ULE6 856 aa14.43□□□□□ -0.1
USP3-203ENST00000538686 USP16Q9Y5T5 823 aa14.43□□□□□ -0.1
USP3-203ENST00000538686 ADGRL3Q9HAR2 1447 aa14.43□□□□□ -0.1
USP3-203ENST00000538686 KNDC1Q76NI1 1749 aa14.42□□□□□ -0.1
USP3-203ENST00000538686 GOLGA6L9A6NEM1 432 aa14.42□□□□□ -0.1
USP3-203ENST00000538686 SCP2P22307 547 aa14.42□□□□□ -0.1
USP3-203ENST00000538686 SFPQP23246 707 aaKnown RBP eCLIP14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms