RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 KDM3BQ7LBC6 1761 aa7.71□□□□□ -1.17
SYNE1-233ENST00000535896 SALL3Q9BXA9 1300 aa7.71□□□□□ -1.18
SYNE1-233ENST00000535896 ADAMTS2O95450 1211 aa7.71□□□□□ -1.18
SYNE1-233ENST00000535896 GNAI3P08754 354 aa7.71□□□□□ -1.18
SYNE1-233ENST00000535896 SDSP20132 328 aa7.71□□□□□ -1.18
SYNE1-233ENST00000535896 EIF4A2Q14240 407 aaKnown RBP7.71□□□□□ -1.18
SYNE1-233ENST00000535896 GAS2L3Q86XJ1 694 aa7.71□□□□□ -1.18
SYNE1-233ENST00000535896 SYAP1Q96A49 352 aaPredicted RBP7.71□□□□□ -1.18
SYNE1-233ENST00000535896 NAP1L5Q96NT1 182 aaPredicted RBP7.71□□□□□ -1.18
SYNE1-233ENST00000535896 LMBRD1Q9NUN5 540 aa7.71□□□□□ -1.18
SYNE1-233ENST00000535896 NWD2Q9ULI1 1742 aa7.7□□□□□ -1.18
SYNE1-233ENST00000535896 LMO7Q8WWI1 1683 aa7.7□□□□□ -1.18
SYNE1-233ENST00000535896 ZNF500O60304 480 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-233ENST00000535896 PHF14O94880 888 aa7.7□□□□□ -1.18
SYNE1-233ENST00000535896 PDIA4P13667 645 aaKnown RBP7.7□□□□□ -1.18
SYNE1-233ENST00000535896 MSNP26038 577 aaKnown RBP7.7□□□□□ -1.18
SYNE1-233ENST00000535896 CUL4AQ13619 759 aa7.7□□□□□ -1.18
SYNE1-233ENST00000535896 ZNF454Q8N9F8 522 aa7.7□□□□□ -1.18
SYNE1-233ENST00000535896 THUMPD2Q9BTF0 503 aaKnown RBP7.7□□□□□ -1.18
SYNE1-233ENST00000535896 PRDM11Q9NQV5 511 aa7.7□□□□□ -1.18
SYNE1-233ENST00000535896 RYDENQ9NUL5 291 aaKnown RBP7.7□□□□□ -1.18
SYNE1-233ENST00000535896 STAP2Q9UGK3 403 aa7.7□□□□□ -1.18
SYNE1-233ENST00000535896 IGSF1Q8N6C5 1336 aa7.69□□□□□ -1.18
SYNE1-233ENST00000535896 SLIT2O94813 1529 aa7.69□□□□□ -1.18
SYNE1-233ENST00000535896 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.69□□□□□ -1.18
SYNE1-233ENST00000535896 GNAI2P04899 355 aa7.69□□□□□ -1.18
SYNE1-233ENST00000535896 PDE1AP54750 535 aa7.69□□□□□ -1.18
SYNE1-233ENST00000535896 CSPP1Q1MSJ5 1256 aa7.69□□□□□ -1.18
SYNE1-233ENST00000535896 ZSCAN23Q3MJ62 389 aa7.69□□□□□ -1.18
SYNE1-233ENST00000535896 LRSAM1Q6UWE0 723 aa7.69□□□□□ -1.18
SYNE1-233ENST00000535896 THSD4Q6ZMP0 1018 aa7.69□□□□□ -1.18
SYNE1-233ENST00000535896 ARHGEF25Q86VW2 580 aa7.69□□□□□ -1.18
SYNE1-233ENST00000535896 FNBP4Q8N3X1 1017 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-233ENST00000535896 OXER1Q8TDS5 423 aa7.69□□□□□ -1.18
SYNE1-233ENST00000535896 NGLY1Q96IV0 654 aa7.69□□□□□ -1.18
SYNE1-233ENST00000535896 C8orf37Q96NL8 207 aa7.69□□□□□ -1.18
SYNE1-233ENST00000535896 MAP7D2Q96T17 732 aa7.69□□□□□ -1.18
SYNE1-233ENST00000535896 BCL2L12Q9HB09 334 aa7.69□□□□□ -1.18
SYNE1-233ENST00000535896 NOL7Q9UMY1 257 aaKnown RBP7.69□□□□□ -1.18
SYNE1-233ENST00000535896 PLCH1Q4KWH8 1693 aa7.69□□□□□ -1.18
SYNE1-233ENST00000535896 LTN1O94822 1766 aa7.69□□□□□ -1.18
SYNE1-233ENST00000535896 OVOS2A0A0G2JMS6 1433 aa7.68□□□□□ -1.18
SYNE1-233ENST00000535896 ERBB4Q15303 1308 aa7.68□□□□□ -1.18
SYNE1-233ENST00000535896 A0A0G2JS52 829 aa7.68□□□□□ -1.18
SYNE1-233ENST00000535896 OFD1O75665 1012 aa7.68□□□□□ -1.18
SYNE1-233ENST00000535896 ZC3H6P61129 1189 aaKnown RBP7.68□□□□□ -1.18
SYNE1-233ENST00000535896 ZNF772Q68DY9 489 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-233ENST00000535896 SULT6B1Q6IMI4 303 aa7.68□□□□□ -1.18
SYNE1-233ENST00000535896 MTERF4Q7Z6M4 381 aaKnown RBP7.68□□□□□ -1.18
SYNE1-233ENST00000535896 FAM184AQ8NB25 1140 aa7.68□□□□□ -1.18
SYNE1-233ENST00000535896 RTF1Q92541 710 aaKnown RBP7.68□□□□□ -1.18
SYNE1-233ENST00000535896 UPF1Q92900 1129 aaKnown RBP eCLIP7.68□□□□□ -1.18
SYNE1-233ENST00000535896 STK31Q9BXU1 1019 aa7.68□□□□□ -1.18
SYNE1-233ENST00000535896 FAM83GA6ND36 823 aa7.67□□□□□ -1.18
SYNE1-233ENST00000535896 GOLGA8CPA6NN73 597 aa7.67□□□□□ -1.18
SYNE1-233ENST00000535896 BHMG1C9JSJ3 638 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-233ENST00000535896 BRD1O95696 1058 aa7.67□□□□□ -1.18
SYNE1-233ENST00000535896 HOXB7P09629 217 aa7.67□□□□□ -1.18
SYNE1-233ENST00000535896 MX1P20591 662 aa7.67□□□□□ -1.18
SYNE1-233ENST00000535896 RRS1Q15050 365 aaKnown RBP7.67□□□□□ -1.18
SYNE1-233ENST00000535896 CCDC30Q5VVM6 783 aa7.67□□□□□ -1.18
SYNE1-233ENST00000535896 MCTP1Q6DN14 999 aa7.67□□□□□ -1.18
SYNE1-233ENST00000535896 TMEM87AQ8NBN3 555 aa7.67□□□□□ -1.18
SYNE1-233ENST00000535896 MEIS3Q99687 375 aa7.67□□□□□ -1.18
SYNE1-233ENST00000535896 ESYT1Q9BSJ8 1104 aa7.67□□□□□ -1.18
SYNE1-233ENST00000535896 LRRCC1Q9C099 1032 aa7.67□□□□□ -1.18
SYNE1-233ENST00000535896 CCDC39Q9UFE4 941 aa7.67□□□□□ -1.18
SYNE1-233ENST00000535896 COL18A1P39060 1754 aa7.67□□□□□ -1.18
SYNE1-233ENST00000535896 CAMTA1Q9Y6Y1 1673 aa7.67□□□□□ -1.18
SYNE1-233ENST00000535896 AFF2P51816 1311 aa7.66□□□□□ -1.18
SYNE1-233ENST00000535896 MAP3K19Q56UN5 1328 aa7.66□□□□□ -1.18
SYNE1-233ENST00000535896 NRAPQ86VF7 1730 aa7.66□□□□□ -1.18
SYNE1-233ENST00000535896 ELL2O00472 640 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-233ENST00000535896 RAB11FIP3O75154 756 aa7.66□□□□□ -1.18
SYNE1-233ENST00000535896 LETM1O95202 739 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-233ENST00000535896 HSP90AA2PQ14568 343 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-233ENST00000535896 TPRNQ4KMQ1 711 aa7.66□□□□□ -1.18
SYNE1-233ENST00000535896 CAVIN1Q6NZI2 390 aaKnown RBP7.66□□□□□ -1.18
SYNE1-233ENST00000535896 UNC5CLQ8IV45 518 aa7.66□□□□□ -1.18
SYNE1-233ENST00000535896 ARXQ96QS3 562 aa7.66□□□□□ -1.18
SYNE1-233ENST00000535896 BTG4Q9NY30 223 aa7.66□□□□□ -1.18
SYNE1-233ENST00000535896 USP21Q9UK80 565 aa7.66□□□□□ -1.18
SYNE1-233ENST00000535896 NCAPD2Q15021 1401 aa7.66□□□□□ -1.18
SYNE1-233ENST00000535896 WDR33Q9C0J8 1336 aaKnown RBP7.66□□□□□ -1.18
SYNE1-233ENST00000535896 COL5A2P05997 1499 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-233ENST00000535896 BCL9LQ86UU0 1499 aa7.65□□□□□ -1.18
SYNE1-233ENST00000535896 MAP3K5Q99683 1374 aa7.65□□□□□ -1.18
SYNE1-233ENST00000535896 PTPREP23469 700 aa7.65□□□□□ -1.18
SYNE1-233ENST00000535896 ATP8B2P98198 1209 aa7.65□□□□□ -1.18
SYNE1-233ENST00000535896 CHRNA2Q15822 529 aa7.65□□□□□ -1.18
SYNE1-233ENST00000535896 UVSSAQ2YD98 709 aa7.65□□□□□ -1.18
SYNE1-233ENST00000535896 IP6K1Q92551 441 aa7.65□□□□□ -1.18
SYNE1-233ENST00000535896 WNT2BQ93097 391 aa7.65□□□□□ -1.18
SYNE1-233ENST00000535896 TMX3Q96JJ7 454 aa7.65□□□□□ -1.18
SYNE1-233ENST00000535896 PDCL3Q9H2J4 239 aa7.65□□□□□ -1.18
SYNE1-233ENST00000535896 TSPYL4Q9UJ04 414 aa7.65□□□□□ -1.18
SYNE1-233ENST00000535896 TRPC5Q9UL62 973 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-233ENST00000535896 ZKSCAN5Q9Y2L8 839 aa7.65□□□□□ -1.18
SYNE1-233ENST00000535896 ATP6V1DQ9Y5K8 247 aa7.65□□□□□ -1.18
SYNE1-233ENST00000535896 USP42Q9H9J4 1324 aaKnown RBP7.65□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms