RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-225ENST00000533704 IBTKQ9P2D0 1353 aaPredicted RBP13.55□□□□□ -0.24
CAPN1-225ENST00000533704 TCERG1O14776 1098 aaKnown RBP13.54□□□□□ -0.24
CAPN1-225ENST00000533704 TOMM70O94826 608 aa13.54□□□□□ -0.24
CAPN1-225ENST00000533704 HOXB7P09629 217 aa13.54□□□□□ -0.24
CAPN1-225ENST00000533704 ALDH1B1P30837 517 aa13.54□□□□□ -0.24
CAPN1-225ENST00000533704 HSP90AB3PQ58FF7 597 aa13.54□□□□□ -0.24
CAPN1-225ENST00000533704 DBF4Q9UBU7 674 aaPredicted RBP13.54□□□□□ -0.24
CAPN1-225ENST00000533704 TAF1P21675 1872 aa13.53□□□□□ -0.24
CAPN1-225ENST00000533704 GLTPD2A6NH11 291 aa13.53□□□□□ -0.24
CAPN1-225ENST00000533704 ZNF853P0CG23 659 aa13.53□□□□□ -0.24
CAPN1-225ENST00000533704 HSPA6P17066 643 aa13.53□□□□□ -0.24
CAPN1-225ENST00000533704 C7orf43Q8WVR3 580 aa13.53□□□□□ -0.24
CAPN1-225ENST00000533704 LTBP3Q9NS15 1303 aa13.53□□□□□ -0.24
CAPN1-225ENST00000533704 TCIRG1Q13488 830 aa13.52□□□□□ -0.25
CAPN1-225ENST00000533704 CRY2Q49AN0 593 aa13.52□□□□□ -0.25
CAPN1-225ENST00000533704 DPY19L2Q6NUT2 758 aa13.52□□□□□ -0.25
CAPN1-225ENST00000533704 C3orf67Q6ZVT6 689 aa13.52□□□□□ -0.25
CAPN1-225ENST00000533704 NLRP10Q86W26 655 aa13.52□□□□□ -0.25
CAPN1-225ENST00000533704 RBM17Q96I25 401 aaKnown RBP13.52□□□□□ -0.25
CAPN1-225ENST00000533704 NLRP3Q96P20 1036 aa13.52□□□□□ -0.25
CAPN1-225ENST00000533704 ZNF277Q9NRM2 450 aaPredicted RBP13.52□□□□□ -0.25
CAPN1-225ENST00000533704 HYPKQ9NX55 129 aa13.52□□□□□ -0.25
CAPN1-225ENST00000533704 TRMT112Q9UI30 125 aaKnown RBP13.52□□□□□ -0.25
CAPN1-225ENST00000533704 SALL2Q9Y467 1007 aaPredicted RBP13.52□□□□□ -0.25
CAPN1-225ENST00000533704 RIC1Q4ADV7 1423 aa13.52□□□□□ -0.25
CAPN1-225ENST00000533704 HCLS1P14317 486 aaPredicted RBP13.51□□□□□ -0.25
CAPN1-225ENST00000533704 FKBP4Q02790 459 aaKnown RBP eCLIP13.51□□□□□ -0.25
CAPN1-225ENST00000533704 ANKRD13DQ6ZTN6 518 aa13.51□□□□□ -0.25
CAPN1-225ENST00000533704 RTKN2Q8IZC4 609 aa13.51□□□□□ -0.25
CAPN1-225ENST00000533704 C8orf58Q8NAV2 365 aa13.51□□□□□ -0.25
CAPN1-225ENST00000533704 PLBD2Q8NHP8 589 aa13.51□□□□□ -0.25
CAPN1-225ENST00000533704 TSR2Q969E8 191 aaKnown RBP13.51□□□□□ -0.25
CAPN1-225ENST00000533704 DDX60Q8IY21 1712 aaKnown RBP13.5□□□□□ -0.25
CAPN1-225ENST00000533704 ATP5J2-PTCD1G3V325 749 aa13.5□□□□□ -0.25
CAPN1-225ENST00000533704 VEGFAP15692 232 aaPredicted RBP13.5□□□□□ -0.25
CAPN1-225ENST00000533704 SYNE4Q8N205 404 aa13.5□□□□□ -0.25
CAPN1-225ENST00000533704 RBM46Q8TBY0 533 aaKnown RBP13.5□□□□□ -0.25
CAPN1-225ENST00000533704 WDR90Q96KV7 1748 aa13.5□□□□□ -0.25
CAPN1-225ENST00000533704 SH3TC1Q8TE82 1336 aa13.49□□□□□ -0.25
CAPN1-225ENST00000533704 PPEF1O14829 653 aaPredicted RBP13.49□□□□□ -0.25
CAPN1-225ENST00000533704 HOXA10P31260 410 aaPredicted RBP13.49□□□□□ -0.25
CAPN1-225ENST00000533704 GOLGA2Q08379 1002 aa13.49□□□□□ -0.25
CAPN1-225ENST00000533704 RIC3Q7Z5B4 369 aa13.49□□□□□ -0.25
CAPN1-225ENST00000533704 CRAMP1Q96RY5 1269 aa13.49□□□□□ -0.25
CAPN1-225ENST00000533704 PHAXQ9H814 394 aaKnown RBP13.49□□□□□ -0.25
CAPN1-225ENST00000533704 RNF123Q5XPI4 1314 aa13.48□□□□□ -0.25
CAPN1-225ENST00000533704 DDNO94850 711 aaPredicted RBP13.48□□□□□ -0.25
CAPN1-225ENST00000533704 RTL5Q5HYW3 569 aaPredicted RBP13.48□□□□□ -0.25
CAPN1-225ENST00000533704 SLC10A5Q5PT55 438 aa13.48□□□□□ -0.25
CAPN1-225ENST00000533704 SLC51AQ86UW1 340 aa13.48□□□□□ -0.25
CAPN1-225ENST00000533704 WWC1Q8IX03 1113 aa13.48□□□□□ -0.25
CAPN1-225ENST00000533704 FAM9BQ8IZU0 186 aa13.48□□□□□ -0.25
CAPN1-225ENST00000533704 TSPYL6Q8N831 410 aa13.48□□□□□ -0.25
CAPN1-225ENST00000533704 TMX4Q9H1E5 349 aaPredicted RBP13.48□□□□□ -0.25
CAPN1-225ENST00000533704 ABCC4O15439 1325 aa13.47□□□□□ -0.25
CAPN1-225ENST00000533704 IARSP41252 1262 aaKnown RBP13.47□□□□□ -0.25
CAPN1-225ENST00000533704 CCDC30Q5VVM6 783 aa13.47□□□□□ -0.25
CAPN1-225ENST00000533704 CC2D2BQ6DHV5 1058 aa13.47□□□□□ -0.25
CAPN1-225ENST00000533704 SCN4AP35499 1836 aa13.46□□□□□ -0.25
CAPN1-225ENST00000533704 APLP1P51693 650 aa13.46□□□□□ -0.25
CAPN1-225ENST00000533704 FSTL1Q12841 308 aa13.46□□□□□ -0.25
CAPN1-225ENST00000533704 CCDC27Q2M243 656 aa13.46□□□□□ -0.25
CAPN1-225ENST00000533704 DDX46Q7L014 1031 aaKnown RBP13.46□□□□□ -0.25
CAPN1-225ENST00000533704 SMC1BQ8NDV3 1235 aa13.46□□□□□ -0.25
CAPN1-225ENST00000533704 FAM89AQ96GI7 184 aa13.46□□□□□ -0.25
CAPN1-225ENST00000533704 MYD88Q99836 296 aa13.46□□□□□ -0.25
CAPN1-225ENST00000533704 ISCA1Q9BUE6 129 aa13.46□□□□□ -0.25
CAPN1-225ENST00000533704 CACNA1FO60840 1977 aa13.45□□□□□ -0.26
CAPN1-225ENST00000533704 ZNF541Q9H0D2 1346 aa13.45□□□□□ -0.26
CAPN1-225ENST00000533704 POTECB2RU33 542 aa13.45□□□□□ -0.26
CAPN1-225ENST00000533704 JDP2Q8WYK2 163 aa13.45□□□□□ -0.26
CAPN1-225ENST00000533704 PSMD1Q99460 953 aa13.45□□□□□ -0.26
CAPN1-225ENST00000533704 STK31Q9BXU1 1019 aa13.45□□□□□ -0.26
CAPN1-225ENST00000533704 CHMP4AQ9BY43 222 aa13.45□□□□□ -0.26
CAPN1-225ENST00000533704 DDX58O95786 925 aaKnown RBP13.44□□□□□ -0.26
CAPN1-225ENST00000533704 TWISTNBQ3B726 338 aaPredicted RBP13.44□□□□□ -0.26
CAPN1-225ENST00000533704 LARGE2Q8N3Y3 721 aa13.44□□□□□ -0.26
CAPN1-225ENST00000533704 SNED1Q8TER0 1413 aa13.44□□□□□ -0.26
CAPN1-225ENST00000533704 IL16Q14005 1332 aa13.43□□□□□ -0.26
CAPN1-225ENST00000533704 IRS4O14654 1257 aaPredicted RBP13.43□□□□□ -0.26
CAPN1-225ENST00000533704 HTRA3P83110 453 aa13.43□□□□□ -0.26
CAPN1-225ENST00000533704 JARID2Q92833 1246 aaPredicted RBP13.43□□□□□ -0.26
CAPN1-225ENST00000533704 ATP6V0A2Q9Y487 856 aa13.43□□□□□ -0.26
CAPN1-225ENST00000533704 GJA3Q9Y6H8 435 aa13.43□□□□□ -0.26
CAPN1-225ENST00000533704 COL4A5P29400 1685 aa13.43□□□□□ -0.26
CAPN1-225ENST00000533704 MYH3P11055 1940 aa13.43□□□□□ -0.26
CAPN1-225ENST00000533704 FANCIQ9NVI1 1328 aa13.42□□□□□ -0.26
CAPN1-225ENST00000533704 PPIP5K2O43314 1243 aa13.42□□□□□ -0.26
CAPN1-225ENST00000533704 BBOX1O75936 387 aa13.42□□□□□ -0.26
CAPN1-225ENST00000533704 EIF6P56537 245 aaKnown RBP13.42□□□□□ -0.26
CAPN1-225ENST00000533704 GRAPQ13588 217 aa13.42□□□□□ -0.26
CAPN1-225ENST00000533704 GRIPAP1Q4V328 841 aa13.42□□□□□ -0.26
CAPN1-225ENST00000533704 GRAPLQ8TC17 118 aaPredicted RBP13.42□□□□□ -0.26
CAPN1-225ENST00000533704 MAP3K2Q9Y2U5 619 aa13.42□□□□□ -0.26
CAPN1-225ENST00000533704 SPEF2Q9C093 1822 aa13.41□□□□□ -0.26
CAPN1-225ENST00000533704 IQCA1LA6NCM1 817 aa13.41□□□□□ -0.26
CAPN1-225ENST00000533704 TRIM28Q13263 835 aaKnown RBP13.41□□□□□ -0.26
CAPN1-225ENST00000533704 AOC3Q16853 763 aa13.41□□□□□ -0.26
CAPN1-225ENST00000533704 EAPPQ56P03 285 aaPredicted RBP13.41□□□□□ -0.26
CAPN1-225ENST00000533704 DPP8Q6V1X1 898 aaPredicted RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms