RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 HACL1Q9UJ83 578 aa20.79■□□□□ 0.92
CHMP4A-207ENST00000533523 RNF123Q5XPI4 1314 aa20.78■□□□□ 0.92
CHMP4A-207ENST00000533523 MAP3K15Q6ZN16 1313 aa20.78■□□□□ 0.92
CHMP4A-207ENST00000533523 PNISRQ8TF01 805 aaKnown RBP20.78■□□□□ 0.92
CHMP4A-207ENST00000533523 CLEC11AQ9Y240 323 aa20.78■□□□□ 0.92
CHMP4A-207ENST00000533523 ANKRD36CQ5JPF3 1778 aa20.77■□□□□ 0.92
CHMP4A-207ENST00000533523 MYL6BP14649 208 aa20.77■□□□□ 0.92
CHMP4A-207ENST00000533523 SYNE4Q8N205 404 aa20.77■□□□□ 0.92
CHMP4A-207ENST00000533523 AIDAQ96BJ3 306 aa20.77■□□□□ 0.92
CHMP4A-207ENST00000533523 THUMPD2Q9BTF0 503 aaKnown RBP20.77■□□□□ 0.92
CHMP4A-207ENST00000533523 RRP7AQ9Y3A4 280 aaKnown RBP20.77■□□□□ 0.92
CHMP4A-207ENST00000533523 WDR33Q9C0J8 1336 aaKnown RBP20.77■□□□□ 0.91
CHMP4A-207ENST00000533523 GPTP24298 496 aa20.76■□□□□ 0.91
CHMP4A-207ENST00000533523 EPHX2P34913 555 aa20.76■□□□□ 0.91
CHMP4A-207ENST00000533523 TTLL7Q6ZT98 887 aa20.76■□□□□ 0.91
CHMP4A-207ENST00000533523 RPGRQ92834 1020 aaKnown RBP20.76■□□□□ 0.91
CHMP4A-207ENST00000533523 ZBTB3Q9H5J0 574 aa20.76■□□□□ 0.91
CHMP4A-207ENST00000533523 RIC1Q4ADV7 1423 aa20.76■□□□□ 0.91
CHMP4A-207ENST00000533523 CASP8AP2Q9UKL3 1982 aa20.76■□□□□ 0.91
CHMP4A-207ENST00000533523 IBTKQ9P2D0 1353 aaPredicted RBP20.75■□□□□ 0.91
CHMP4A-207ENST00000533523 LAMB2P55268 1798 aa20.75■□□□□ 0.91
CHMP4A-207ENST00000533523 ERVV-1B6SEH8 477 aa20.75■□□□□ 0.91
CHMP4A-207ENST00000533523 RGS19P49795 217 aa20.75■□□□□ 0.91
CHMP4A-207ENST00000533523 CRY2Q49AN0 593 aa20.75■□□□□ 0.91
CHMP4A-207ENST00000533523 UBN2Q6ZU65 1347 aa20.75■□□□□ 0.91
CHMP4A-207ENST00000533523 MAPK8IP3Q9UPT6 1336 aa20.75■□□□□ 0.91
CHMP4A-207ENST00000533523 EIF4A1P60842 406 aaKnown RBP20.74■□□□□ 0.91
CHMP4A-207ENST00000533523 DDX10Q13206 875 aaKnown RBP20.74■□□□□ 0.91
CHMP4A-207ENST00000533523 NFE2L2Q16236 605 aa20.74■□□□□ 0.91
CHMP4A-207ENST00000533523 PDE4DIPQ5VU43 2346 aa20.74■□□□□ 0.91
CHMP4A-207ENST00000533523 CNTROBQ8N137 903 aa20.74■□□□□ 0.91
CHMP4A-207ENST00000533523 JDP2Q8WYK2 163 aa20.74■□□□□ 0.91
CHMP4A-207ENST00000533523 PSMD1Q99460 953 aa20.74■□□□□ 0.91
CHMP4A-207ENST00000533523 FZD9O00144 591 aa20.73■□□□□ 0.91
CHMP4A-207ENST00000533523 DEFB115Q30KQ5 88 aa20.73■□□□□ 0.91
CHMP4A-207ENST00000533523 GPC2Q8N158 579 aa20.73■□□□□ 0.91
CHMP4A-207ENST00000533523 TSKSQ9UJT2 592 aa20.73■□□□□ 0.91
CHMP4A-207ENST00000533523 PLEKHF1Q96S99 279 aa20.72■□□□□ 0.91
CHMP4A-207ENST00000533523 GJA3Q9Y6H8 435 aa20.72■□□□□ 0.91
CHMP4A-207ENST00000533523 EIF6P56537 245 aaKnown RBP20.71■□□□□ 0.91
CHMP4A-207ENST00000533523 PNMA8AQ86V59 439 aaPredicted RBP20.71■□□□□ 0.91
CHMP4A-207ENST00000533523 TCERG1O14776 1098 aaKnown RBP20.7■□□□□ 0.9
CHMP4A-207ENST00000533523 PPEF1O14829 653 aaPredicted RBP20.7■□□□□ 0.9
CHMP4A-207ENST00000533523 LMOD1P29536 600 aaPredicted RBP20.7■□□□□ 0.9
CHMP4A-207ENST00000533523 SUSD4Q5VX71 490 aa20.7■□□□□ 0.9
CHMP4A-207ENST00000533523 CST9Q5W186 159 aa20.7■□□□□ 0.9
CHMP4A-207ENST00000533523 CC2D2BQ6DHV5 1058 aa20.7■□□□□ 0.9
CHMP4A-207ENST00000533523 LARGE2Q8N3Y3 721 aa20.7■□□□□ 0.9
CHMP4A-207ENST00000533523 RBM17Q96I25 401 aaKnown RBP20.7■□□□□ 0.9
CHMP4A-207ENST00000533523 NTSR2O95665 410 aa20.69■□□□□ 0.9
CHMP4A-207ENST00000533523 CYP4F22Q6NT55 531 aa20.69■□□□□ 0.9
CHMP4A-207ENST00000533523 DDX21Q9NR30 783 aaKnown RBP eCLIP20.69■□□□□ 0.9
CHMP4A-207ENST00000533523 TSPYL4Q9UJ04 414 aa20.69■□□□□ 0.9
CHMP4A-207ENST00000533523 TRAF5O00463 557 aa20.68■□□□□ 0.9
CHMP4A-207ENST00000533523 HOXA10P31260 410 aaPredicted RBP20.68■□□□□ 0.9
CHMP4A-207ENST00000533523 ERBB4Q15303 1308 aa20.68■□□□□ 0.9
CHMP4A-207ENST00000533523 TAF1P21675 1872 aa20.67■□□□□ 0.9
CHMP4A-207ENST00000533523 CCDC85CA6NKD9 419 aa20.67■□□□□ 0.9
CHMP4A-207ENST00000533523 AOC2O75106 756 aa20.67■□□□□ 0.9
CHMP4A-207ENST00000533523 SCNN1DP51172 638 aa20.67■□□□□ 0.9
CHMP4A-207ENST00000533523 RALBP1Q15311 655 aa20.67■□□□□ 0.9
CHMP4A-207ENST00000533523 DIEXFQ68CQ4 756 aaKnown RBP20.67■□□□□ 0.9
CHMP4A-207ENST00000533523 GIGYF2Q6Y7W6 1299 aaKnown RBP20.67■□□□□ 0.9
CHMP4A-207ENST00000533523 C3orf67Q6ZVT6 689 aa20.67■□□□□ 0.9
CHMP4A-207ENST00000533523 CAPNS2Q96L46 248 aa20.67■□□□□ 0.9
CHMP4A-207ENST00000533523 PNNQ9H307 717 aaKnown RBP20.67■□□□□ 0.9
CHMP4A-207ENST00000533523 ABT1Q9ULW3 272 aaKnown RBP20.67■□□□□ 0.9
CHMP4A-207ENST00000533523 MLLT1Q03111 559 aaPredicted RBP20.66■□□□□ 0.9
CHMP4A-207ENST00000533523 PPP1R42Q7Z4L9 355 aa20.66■□□□□ 0.9
CHMP4A-207ENST00000533523 NIM1KQ8IY84 436 aa20.66■□□□□ 0.9
CHMP4A-207ENST00000533523 ZNF34Q8IZ26 560 aa20.66■□□□□ 0.9
CHMP4A-207ENST00000533523 CRAMP1Q96RY5 1269 aa20.66■□□□□ 0.9
CHMP4A-207ENST00000533523 EIF2S2P20042 333 aaKnown RBP20.65■□□□□ 0.9
CHMP4A-207ENST00000533523 EPS15P42566 896 aa20.65■□□□□ 0.9
CHMP4A-207ENST00000533523 MAP2K1Q02750 393 aaPredicted RBP20.65■□□□□ 0.9
CHMP4A-207ENST00000533523 GRIPAP1Q4V328 841 aa20.65■□□□□ 0.9
CHMP4A-207ENST00000533523 PARP10Q53GL7 1025 aa20.65■□□□□ 0.9
CHMP4A-207ENST00000533523 PPIP5K2O43314 1243 aa20.64■□□□□ 0.89
CHMP4A-207ENST00000533523 TMX4Q9H1E5 349 aaPredicted RBP20.64■□□□□ 0.89
CHMP4A-207ENST00000533523 ANXA1P04083 346 aa20.63■□□□□ 0.89
CHMP4A-207ENST00000533523 AOC3Q16853 763 aa20.63■□□□□ 0.89
CHMP4A-207ENST00000533523 ABCC4O15439 1325 aa20.62■□□□□ 0.89
CHMP4A-207ENST00000533523 PROSER3Q2NL68 480 aa20.62■□□□□ 0.89
CHMP4A-207ENST00000533523 NLRP3Q96P20 1036 aa20.62■□□□□ 0.89
CHMP4A-207ENST00000533523 UTP14AQ9BVJ6 771 aaKnown RBP20.62■□□□□ 0.89
CHMP4A-207ENST00000533523 DDX60Q8IY21 1712 aaKnown RBP20.61■□□□□ 0.89
CHMP4A-207ENST00000533523 PAXIP1Q6ZW49 1069 aaPredicted RBP20.61■□□□□ 0.89
CHMP4A-207ENST00000533523 NECTIN2Q92692 538 aa20.61■□□□□ 0.89
CHMP4A-207ENST00000533523 MCOLN1Q9GZU1 580 aa20.61■□□□□ 0.89
CHMP4A-207ENST00000533523 RIPK4P57078 832 aa20.6■□□□□ 0.89
CHMP4A-207ENST00000533523 GRM1Q13255 1194 aa20.6■□□□□ 0.89
CHMP4A-207ENST00000533523 PDIA6Q15084 440 aa20.6■□□□□ 0.89
CHMP4A-207ENST00000533523 LRP10Q7Z4F1 713 aa20.6■□□□□ 0.89
CHMP4A-207ENST00000533523 GPR101Q96P66 508 aaPredicted RBP20.6■□□□□ 0.89
CHMP4A-207ENST00000533523 ZIC5Q96T25 663 aa20.6■□□□□ 0.89
CHMP4A-207ENST00000533523 TLL2Q9Y6L7 1015 aa20.6■□□□□ 0.89
CHMP4A-207ENST00000533523 LRRC37AA6NMS7 1700 aa20.59■□□□□ 0.89
CHMP4A-207ENST00000533523 MKI67P46013 3256 aaKnown RBP20.59■□□□□ 0.89
CHMP4A-207ENST00000533523 ATP6V0A2Q9Y487 856 aa20.59■□□□□ 0.89
CHMP4A-207ENST00000533523 LMOD3Q0VAK6 560 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms