RNA–Protein interactions for RNA: ENST00000531336.1

SMPD1-206, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 2

Gene SMPD1, Length 650 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-206ENST00000531336 TPTE2Q6XPS3 522 aa17.6■□□□□ 0.41
SMPD1-206ENST00000531336 SYT17Q9BSW7 474 aa17.6■□□□□ 0.41
SMPD1-206ENST00000531336 UTP14AQ9BVJ6 771 aaKnown RBP17.6■□□□□ 0.41
SMPD1-206ENST00000531336 KIF16BQ96L93 1317 aa17.6■□□□□ 0.41
SMPD1-206ENST00000531336 PXDNLA1KZ92 1463 aa17.6■□□□□ 0.41
SMPD1-206ENST00000531336 DDX60Q8IY21 1712 aaKnown RBP17.6■□□□□ 0.41
SMPD1-206ENST00000531336 ERFEQ4G0M1 354 aa17.59■□□□□ 0.41
SMPD1-206ENST00000531336 SLC4A10Q6U841 1118 aa17.59■□□□□ 0.41
SMPD1-206ENST00000531336 NOB1Q9ULX3 412 aaKnown RBP17.59■□□□□ 0.41
SMPD1-206ENST00000531336 BRCA1P38398 1863 aaKnown RBP17.58■□□□□ 0.41
SMPD1-206ENST00000531336 CACNA1SQ13698 1873 aa17.58■□□□□ 0.41
SMPD1-206ENST00000531336 IGKV5-2P06315 115 aa17.58■□□□□ 0.4
SMPD1-206ENST00000531336 BRPF1P55201 1214 aaPredicted RBP17.58■□□□□ 0.4
SMPD1-206ENST00000531336 CWF19L2Q2TBE0 894 aaKnown RBP17.58■□□□□ 0.4
SMPD1-206ENST00000531336 CWC25Q9NXE8 425 aaPredicted RBP17.58■□□□□ 0.4
SMPD1-206ENST00000531336 TRMT112Q9UI30 125 aaKnown RBP17.58■□□□□ 0.4
SMPD1-206ENST00000531336 NEURL1BA8MQ27 555 aa17.57■□□□□ 0.4
SMPD1-206ENST00000531336 TRIM28Q13263 835 aaKnown RBP17.57■□□□□ 0.4
SMPD1-206ENST00000531336 CCDC191Q8NCU4 936 aa17.57■□□□□ 0.4
SMPD1-206ENST00000531336 FRAT1Q92837 279 aaPredicted RBP17.57■□□□□ 0.4
SMPD1-206ENST00000531336 SH3TC1Q8TE82 1336 aa17.56■□□□□ 0.4
SMPD1-206ENST00000531336 RTL5Q5HYW3 569 aaPredicted RBP17.56■□□□□ 0.4
SMPD1-206ENST00000531336 BRIP1Q9BX63 1249 aa17.56■□□□□ 0.4
SMPD1-206ENST00000531336 RIC1Q4ADV7 1423 aa17.55■□□□□ 0.4
SMPD1-206ENST00000531336 RNF123Q5XPI4 1314 aa17.55■□□□□ 0.4
SMPD1-206ENST00000531336 DPEP1P16444 411 aa17.55■□□□□ 0.4
SMPD1-206ENST00000531336 CHRNA5P30532 468 aa17.55■□□□□ 0.4
SMPD1-206ENST00000531336 TGFB2P61812 414 aa17.55■□□□□ 0.4
SMPD1-206ENST00000531336 BEND3Q5T5X7 828 aa17.55■□□□□ 0.4
SMPD1-206ENST00000531336 SYNE4Q8N205 404 aa17.55■□□□□ 0.4
SMPD1-206ENST00000531336 LINS1Q8NG48 757 aa17.55■□□□□ 0.4
SMPD1-206ENST00000531336 FAM89AQ96GI7 184 aa17.55■□□□□ 0.4
SMPD1-206ENST00000531336 API5Q9BZZ5 524 aaKnown RBP17.55■□□□□ 0.4
SMPD1-206ENST00000531336 RCAN3Q9UKA8 241 aa17.55■□□□□ 0.4
SMPD1-206ENST00000531336 WWC3Q9ULE0 1092 aa17.55■□□□□ 0.4
SMPD1-206ENST00000531336 MYH3P11055 1940 aa17.55■□□□□ 0.4
SMPD1-206ENST00000531336 A0A0G2JLW4 131 aa17.54■□□□□ 0.4
SMPD1-206ENST00000531336 PDE6BP35913 854 aa17.54■□□□□ 0.4
SMPD1-206ENST00000531336 C2CD5Q86YS7 1000 aa17.54■□□□□ 0.4
SMPD1-206ENST00000531336 JARID2Q92833 1246 aaPredicted RBP17.54■□□□□ 0.4
SMPD1-206ENST00000531336 PCCAP05165 728 aaPredicted RBP17.53■□□□□ 0.4
SMPD1-206ENST00000531336 HCLS1P14317 486 aaPredicted RBP17.53■□□□□ 0.4
SMPD1-206ENST00000531336 ZBTB38Q8NAP3 1195 aaPredicted RBP17.53■□□□□ 0.4
SMPD1-206ENST00000531336 SRCIN1Q9C0H9 1055 aa17.53■□□□□ 0.4
SMPD1-206ENST00000531336 H0YIN7 160 aa17.52■□□□□ 0.4
SMPD1-206ENST00000531336 IPO8O15397 1037 aaKnown RBP17.52■□□□□ 0.4
SMPD1-206ENST00000531336 GCKRQ14397 625 aa17.52■□□□□ 0.4
SMPD1-206ENST00000531336 ATF7IPQ6VMQ6 1270 aa17.52■□□□□ 0.4
SMPD1-206ENST00000531336 TNNQ9UQP3 1299 aa17.52■□□□□ 0.4
SMPD1-206ENST00000531336 IRS4O14654 1257 aaPredicted RBP17.51■□□□□ 0.39
SMPD1-206ENST00000531336 ALDH1L1O75891 902 aa17.51■□□□□ 0.39
SMPD1-206ENST00000531336 TRIM27P14373 513 aa17.51■□□□□ 0.39
SMPD1-206ENST00000531336 ZKSCAN2Q63HK3 967 aa17.51■□□□□ 0.39
SMPD1-206ENST00000531336 C3orf67Q6ZVT6 689 aa17.51■□□□□ 0.39
SMPD1-206ENST00000531336 UBE3BQ7Z3V4 1068 aa17.51■□□□□ 0.39
SMPD1-206ENST00000531336 PELP1Q8IZL8 1130 aaKnown RBP17.51■□□□□ 0.39
SMPD1-206ENST00000531336 ARHGAP45Q92619 1136 aa17.51■□□□□ 0.39
SMPD1-206ENST00000531336 ABCC4O15439 1325 aa17.5■□□□□ 0.39
SMPD1-206ENST00000531336 ZNF622Q969S3 477 aaKnown RBP eCLIP17.5■□□□□ 0.39
SMPD1-206ENST00000531336 CLUAP1Q96AJ1 413 aa17.5■□□□□ 0.39
SMPD1-206ENST00000531336 ARFGEF1Q9Y6D6 1849 aa17.49■□□□□ 0.39
SMPD1-206ENST00000531336 KCNA3P22001 575 aa17.49■□□□□ 0.39
SMPD1-206ENST00000531336 SLC10A5Q5PT55 438 aa17.49■□□□□ 0.39
SMPD1-206ENST00000531336 NLRP3Q96P20 1036 aa17.49■□□□□ 0.39
SMPD1-206ENST00000531336 PDZRN3Q9UPQ7 1066 aa17.49■□□□□ 0.39
SMPD1-206ENST00000531336 CDHR2Q9BYE9 1310 aa17.48■□□□□ 0.39
SMPD1-206ENST00000531336 TAF1P21675 1872 aa17.48■□□□□ 0.39
SMPD1-206ENST00000531336 KLRG2A4D1S0 409 aaPredicted RBP17.48■□□□□ 0.39
SMPD1-206ENST00000531336 H7C1W4 665 aa17.48■□□□□ 0.39
SMPD1-206ENST00000531336 SRGNP10124 158 aa17.48■□□□□ 0.39
SMPD1-206ENST00000531336 CCT4P50991 539 aaKnown RBP17.48■□□□□ 0.39
SMPD1-206ENST00000531336 RPGRQ92834 1020 aaKnown RBP17.48■□□□□ 0.39
SMPD1-206ENST00000531336 MASTLQ96GX5 879 aa17.48■□□□□ 0.39
SMPD1-206ENST00000531336 C9orf78Q9NZ63 289 aaPredicted RBP17.48■□□□□ 0.39
SMPD1-206ENST00000531336 PIM2Q9P1W9 311 aa17.48■□□□□ 0.39
SMPD1-206ENST00000531336 SLX4Q8IY92 1834 aa17.48■□□□□ 0.39
SMPD1-206ENST00000531336 GRM8O00222 908 aa17.47■□□□□ 0.39
SMPD1-206ENST00000531336 CASP7P55210 303 aa17.47■□□□□ 0.39
SMPD1-206ENST00000531336 CRY2Q49AN0 593 aa17.47■□□□□ 0.39
SMPD1-206ENST00000531336 FTSJ3Q8IY81 847 aaKnown RBP17.47■□□□□ 0.39
SMPD1-206ENST00000531336 BCS1LQ9Y276 419 aa17.47■□□□□ 0.39
SMPD1-206ENST00000531336 SPEF2Q9C093 1822 aa17.47■□□□□ 0.39
SMPD1-206ENST00000531336 HSP90B1P14625 803 aaKnown RBP17.46■□□□□ 0.39
SMPD1-206ENST00000531336 NPR1P16066 1061 aa17.46■□□□□ 0.39
SMPD1-206ENST00000531336 STYK1Q6J9G0 422 aa17.46■□□□□ 0.39
SMPD1-206ENST00000531336 PLIN1O60240 522 aa17.45■□□□□ 0.38
SMPD1-206ENST00000531336 PDE8AO60658 829 aa17.45■□□□□ 0.38
SMPD1-206ENST00000531336 GPR162Q16538 588 aa17.45■□□□□ 0.38
SMPD1-206ENST00000531336 DALRD3Q5D0E6 543 aaKnown RBP17.45■□□□□ 0.38
SMPD1-206ENST00000531336 DZIP1LQ8IYY4 767 aaKnown RBP17.45■□□□□ 0.38
SMPD1-206ENST00000531336 TTLL6Q8N841 843 aa17.45■□□□□ 0.38
SMPD1-206ENST00000531336 YBX3P16989 372 aaKnown RBP eCLIP17.44■□□□□ 0.38
SMPD1-206ENST00000531336 CTSWP56202 376 aa17.44■□□□□ 0.38
SMPD1-206ENST00000531336 INTS3Q68E01 1043 aaKnown RBP17.44■□□□□ 0.38
SMPD1-206ENST00000531336 TMEM57Q8N5G2 664 aa17.44■□□□□ 0.38
SMPD1-206ENST00000531336 CNKSR1Q969H4 720 aa17.44■□□□□ 0.38
SMPD1-206ENST00000531336 RBM17Q96I25 401 aaKnown RBP17.44■□□□□ 0.38
SMPD1-206ENST00000531336 CCDC85AQ96PX6 553 aaPredicted RBP17.44■□□□□ 0.38
SMPD1-206ENST00000531336 COL4A1P02462 1669 aa17.44■□□□□ 0.38
SMPD1-206ENST00000531336 NBPF7P0C2Y1 421 aaPredicted RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms