RNA–Protein interactions for RNA: ENST00000530170.1

RPS3-215, Transcript of ribosomal protein S3, human

TSL 5

Gene RPS3, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RPS3-215	ENST00000530170	PI4KAP2	A4QPH2	592 aa		11.14	□□□□□ -0.63
RPS3-215	ENST00000530170	GLRX3	O76003	335 aa	Known RBP	11.14	□□□□□ -0.63
RPS3-215	ENST00000530170	MKRN4P	Q13434	485 aa	Predicted RBP	11.14	□□□□□ -0.63
RPS3-215	ENST00000530170	CHRNA2	Q15822	529 aa		11.14	□□□□□ -0.63
RPS3-215	ENST00000530170	CNTROB	Q8N137	903 aa		11.14	□□□□□ -0.63
RPS3-215	ENST00000530170	PI4KAP1	Q8N8J0	262 aa		11.14	□□□□□ -0.63
RPS3-215	ENST00000530170	MTFR1L	Q9H019	292 aa		11.14	□□□□□ -0.63
RPS3-215	ENST00000530170	PHAX	Q9H814	394 aa	Known RBP	11.14	□□□□□ -0.63
RPS3-215	ENST00000530170	SNRK	Q9NRH2	765 aa		11.14	□□□□□ -0.63
RPS3-215	ENST00000530170	STK32B	Q9NY57	414 aa		11.14	□□□□□ -0.63
RPS3-215	ENST00000530170	PLSCR1	O15162	318 aa		11.13	□□□□□ -0.63
RPS3-215	ENST00000530170	SGSM2	O43147	1006 aa		11.13	□□□□□ -0.63
RPS3-215	ENST00000530170	BAG4	O95429	457 aa	Known RBP	11.13	□□□□□ -0.63
RPS3-215	ENST00000530170	HSPA4	P34932	840 aa		11.13	□□□□□ -0.63
RPS3-215	ENST00000530170	BARGIN	Q6ZT62	677 aa		11.13	□□□□□ -0.63
RPS3-215	ENST00000530170	GPATCH3	Q96I76	525 aa		11.13	□□□□□ -0.63
RPS3-215	ENST00000530170	RBM42	Q9BTD8	480 aa	Known RBP	11.13	□□□□□ -0.63
RPS3-215	ENST00000530170	SLC52A2	Q9HAB3	445 aa		11.13	□□□□□ -0.63
RPS3-215	ENST00000530170	SPG7	Q9UQ90	795 aa		11.13	□□□□□ -0.63
RPS3-215	ENST00000530170	WNK3	Q9BYP7	1800 aa		11.13	□□□□□ -0.63
RPS3-215	ENST00000530170	TNS2	Q63HR2	1409 aa		11.12	□□□□□ -0.63
RPS3-215	ENST00000530170	THSD7A	Q9UPZ6	1657 aa		11.12	□□□□□ -0.63
RPS3-215	ENST00000530170	HIP1	O00291	1037 aa		11.12	□□□□□ -0.63
RPS3-215	ENST00000530170	SRGAP3	O43295	1099 aa		11.12	□□□□□ -0.63
RPS3-215	ENST00000530170	RAPGEF4	Q8WZA2	1011 aa		11.12	□□□□□ -0.63
RPS3-215	ENST00000530170	KCNB2	Q92953	911 aa		11.12	□□□□□ -0.63
RPS3-215	ENST00000530170	RREB1	Q92766	1687 aa		11.11	□□□□□ -0.63
RPS3-215	ENST00000530170	KCP	Q6ZWJ8	1503 aa		11.11	□□□□□ -0.63
RPS3-215	ENST00000530170	GRM8	O00222	908 aa		11.11	□□□□□ -0.63
RPS3-215	ENST00000530170	SURF6	O75683	361 aa	Known RBP	11.11	□□□□□ -0.63
RPS3-215	ENST00000530170	PDIA4	P13667	645 aa	Known RBP	11.11	□□□□□ -0.63
RPS3-215	ENST00000530170	PHKG2	P15735	406 aa		11.11	□□□□□ -0.63
RPS3-215	ENST00000530170	TAT	P17735	454 aa	Predicted RBP	11.11	□□□□□ -0.63
RPS3-215	ENST00000530170	SSFA2	P28290	1259 aa		11.11	□□□□□ -0.63
RPS3-215	ENST00000530170	ZNF445	P59923	1031 aa		11.11	□□□□□ -0.63
RPS3-215	ENST00000530170	RUFY2	Q8WXA3	655 aa		11.11	□□□□□ -0.63
RPS3-215	ENST00000530170	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.11	□□□□□ -0.63
RPS3-215	ENST00000530170	BRPF3	Q9ULD4	1205 aa		11.11	□□□□□ -0.63
RPS3-215	ENST00000530170	CIC	Q96RK0	1608 aa	Predicted RBP	11.1	□□□□□ -0.63
RPS3-215	ENST00000530170	NBPF7	P0C2Y1	421 aa	Predicted RBP	11.1	□□□□□ -0.63
RPS3-215	ENST00000530170	ZC3H6	P61129	1189 aa	Known RBP	11.1	□□□□□ -0.63
RPS3-215	ENST00000530170	SLC15A2	Q16348	729 aa		11.1	□□□□□ -0.63
RPS3-215	ENST00000530170	ZNF790	Q6PG37	636 aa		11.1	□□□□□ -0.63
RPS3-215	ENST00000530170	LARP1	Q6PKG0	1096 aa	Known RBP	11.1	□□□□□ -0.63
RPS3-215	ENST00000530170	MPRIP	Q6WCQ1	1025 aa		11.1	□□□□□ -0.63
RPS3-215	ENST00000530170	IFNL2	Q8IZJ0	200 aa		11.1	□□□□□ -0.63
RPS3-215	ENST00000530170	CLASRP	Q8N2M8	674 aa	Known RBP	11.1	□□□□□ -0.63
RPS3-215	ENST00000530170	SPRYD3	Q8NCJ5	442 aa		11.1	□□□□□ -0.63
RPS3-215	ENST00000530170	DCAF5	Q96JK2	942 aa		11.1	□□□□□ -0.63
RPS3-215	ENST00000530170	TM6SF1	Q9BZW5	370 aa		11.1	□□□□□ -0.63
RPS3-215	ENST00000530170	ANKRD36C	Q5JPF3	1778 aa		11.1	□□□□□ -0.63
RPS3-215	ENST00000530170	GOLGB1	Q14789	3259 aa	Known RBP	11.1	□□□□□ -0.63
RPS3-215	ENST00000530170	NRAP	Q86VF7	1730 aa		11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	TOGARAM1	Q9Y4F4	1720 aa		11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	CHD4	Q14839	1912 aa		11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	COL5A2	P05997	1499 aa	Predicted RBP	11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	APBB1	O00213	710 aa		11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	KCNQ3	O43525	872 aa		11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	BRD1	O95696	1058 aa		11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	MBD3	O95983	291 aa		11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	EIF2S2	P20042	333 aa	Known RBP	11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	PDIA6	Q15084	440 aa		11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	LRP10	Q7Z4F1	713 aa		11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	ZNF526	Q8TF50	670 aa	Predicted RBP	11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	TMX3	Q96JJ7	454 aa		11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	SGIP1	Q9BQI5	828 aa		11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	GRPEL1	Q9HAV7	217 aa		11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	ECHDC1	Q9NTX5	307 aa		11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	AXIN2	Q9Y2T1	843 aa		11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	MAP3K2	Q9Y2U5	619 aa		11.09	□□□□□ -0.63
RPS3-215	ENST00000530170	COL14A1	Q05707	1796 aa	Known RBP	11.08	□□□□□ -0.64
RPS3-215	ENST00000530170	MED23	Q9ULK4	1368 aa		11.08	□□□□□ -0.64
RPS3-215	ENST00000530170	TRIM6-TRIM34	B2RNG4	842 aa		11.08	□□□□□ -0.64
RPS3-215	ENST00000530170	XRCC6	P12956	609 aa	Known RBP eCLIP	11.08	□□□□□ -0.64	6e-7	■■■■□ 23.1
RPS3-215	ENST00000530170	RABL6	Q3YEC7	729 aa	Predicted RBP	11.08	□□□□□ -0.64
RPS3-215	ENST00000530170	COL13A1	Q5TAT6	717 aa	Predicted RBP	11.08	□□□□□ -0.64
RPS3-215	ENST00000530170	PTF1A	Q7RTS3	328 aa		11.08	□□□□□ -0.64
RPS3-215	ENST00000530170	NECTIN2	Q92692	538 aa		11.08	□□□□□ -0.64
RPS3-215	ENST00000530170	LSG1	Q9H089	658 aa	Known RBP	11.08	□□□□□ -0.64
RPS3-215	ENST00000530170	ANO2	Q9NQ90	1003 aa		11.08	□□□□□ -0.64
RPS3-215	ENST00000530170	TCHH	Q07283	1943 aa		11.07	□□□□□ -0.64
RPS3-215	ENST00000530170	NEXN	Q0ZGT2	675 aa		11.07	□□□□□ -0.64
RPS3-215	ENST00000530170	TMEM87A	Q8NBN3	555 aa		11.07	□□□□□ -0.64
RPS3-215	ENST00000530170	EVI5L	Q96CN4	794 aa		11.07	□□□□□ -0.64
RPS3-215	ENST00000530170	TTC14	Q96N46	770 aa		11.07	□□□□□ -0.64
RPS3-215	ENST00000530170	METTL22	Q9BUU2	404 aa	Predicted RBP	11.07	□□□□□ -0.64
RPS3-215	ENST00000530170	LMBRD1	Q9NUN5	540 aa		11.07	□□□□□ -0.64
RPS3-215	ENST00000530170	C9orf78	Q9NZ63	289 aa	Predicted RBP	11.07	□□□□□ -0.64
RPS3-215	ENST00000530170	RPAP1	Q9BWH6	1393 aa	Predicted RBP	11.06	□□□□□ -0.64
RPS3-215	ENST00000530170	MYH3	P11055	1940 aa		11.06	□□□□□ -0.64
RPS3-215	ENST00000530170	MYH7	P12883	1935 aa		11.06	□□□□□ -0.64
RPS3-215	ENST00000530170	NEURL1B	A8MQ27	555 aa		11.06	□□□□□ -0.64
RPS3-215	ENST00000530170	GRIN3B	O60391	1043 aa		11.06	□□□□□ -0.64
RPS3-215	ENST00000530170	SNRPA1	P09661	255 aa	Known RBP	11.06	□□□□□ -0.64
RPS3-215	ENST00000530170	PRELP	P51888	382 aa		11.06	□□□□□ -0.64
RPS3-215	ENST00000530170	NEK4	P51957	841 aa		11.06	□□□□□ -0.64
RPS3-215	ENST00000530170	TXNRD1	Q16881	649 aa		11.06	□□□□□ -0.64
RPS3-215	ENST00000530170	PROSER3	Q2NL68	480 aa		11.06	□□□□□ -0.64
RPS3-215	ENST00000530170	TNS4	Q8IZW8	715 aa		11.06	□□□□□ -0.64
RPS3-215	ENST00000530170	RILPL2	Q969X0	211 aa		11.06	□□□□□ -0.64

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