RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 AXIN1O15169 862 aa7.52□□□□□ -1.21
CD44-220ENST00000525688 F11P03951 625 aa7.52□□□□□ -1.21
CD44-220ENST00000525688 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.52□□□□□ -1.21
CD44-220ENST00000525688 PKDCCQ504Y2 493 aa7.52□□□□□ -1.21
CD44-220ENST00000525688 SAMD5Q5TGI4 173 aa7.52□□□□□ -1.21
CD44-220ENST00000525688 ALG1LQ6GMV1 187 aa7.52□□□□□ -1.21
CD44-220ENST00000525688 LRRC69Q6ZNQ3 347 aa7.52□□□□□ -1.21
CD44-220ENST00000525688 NLRP8Q86W28 1048 aa7.52□□□□□ -1.21
CD44-220ENST00000525688 TTC16Q8NEE8 873 aa7.52□□□□□ -1.21
CD44-220ENST00000525688 DNMT3LQ9UJW3 386 aa7.52□□□□□ -1.21
CD44-220ENST00000525688 RECKO95980 971 aa7.51□□□□□ -1.21
CD44-220ENST00000525688 ITGAEP38570 1179 aa7.51□□□□□ -1.21
CD44-220ENST00000525688 ATP2B2Q01814 1243 aa7.51□□□□□ -1.21
CD44-220ENST00000525688 C8orf34Q49A92 452 aa7.51□□□□□ -1.21
CD44-220ENST00000525688 PDE12Q6L8Q7 609 aaKnown RBP7.51□□□□□ -1.21
CD44-220ENST00000525688 TMC4Q7Z404 712 aa7.51□□□□□ -1.21
CD44-220ENST00000525688 FBF1Q8TES7 1133 aa7.51□□□□□ -1.21
CD44-220ENST00000525688 CSRNP1Q96S65 589 aa7.51□□□□□ -1.21
CD44-220ENST00000525688 PARP2Q9UGN5 583 aa7.51□□□□□ -1.21
CD44-220ENST00000525688 FNDC3AQ9Y2H6 1198 aaKnown RBP7.51□□□□□ -1.21
CD44-220ENST00000525688 RTCBQ9Y3I0 505 aaKnown RBP7.51□□□□□ -1.21
CD44-220ENST00000525688 KCNMB2Q9Y691 235 aa7.51□□□□□ -1.21
CD44-220ENST00000525688 PNMA6FA0A0J9YX94 578 aa7.5□□□□□ -1.21
CD44-220ENST00000525688 GFRA3O60609 400 aa7.5□□□□□ -1.21
CD44-220ENST00000525688 EPB42P16452 691 aa7.5□□□□□ -1.21
CD44-220ENST00000525688 DAB2P98082 770 aa7.5□□□□□ -1.21
CD44-220ENST00000525688 TYRO3Q06418 890 aa7.5□□□□□ -1.21
CD44-220ENST00000525688 LBRQ14739 615 aaKnown RBP7.5□□□□□ -1.21
CD44-220ENST00000525688 DUSP9Q99956 384 aaKnown RBP7.5□□□□□ -1.21
CD44-220ENST00000525688 SENP3-EIF4A1A0A087X0R7 540 aa7.49□□□□□ -1.21
CD44-220ENST00000525688 EIF1AYO14602 144 aaKnown RBP7.49□□□□□ -1.21
CD44-220ENST00000525688 EGFRP00533 1210 aa7.49□□□□□ -1.21
CD44-220ENST00000525688 TCF3P15923 654 aa7.49□□□□□ -1.21
CD44-220ENST00000525688 GRNP28799 593 aaKnown RBP7.49□□□□□ -1.21
CD44-220ENST00000525688 XPCQ01831 940 aaPredicted RBP7.49□□□□□ -1.21
CD44-220ENST00000525688 ORC1Q13415 861 aa7.49□□□□□ -1.21
CD44-220ENST00000525688 LAPTM4AQ15012 233 aa7.49□□□□□ -1.21
CD44-220ENST00000525688 TRIP4Q15650 581 aaPredicted RBP7.49□□□□□ -1.21
CD44-220ENST00000525688 PGBD3Q8N328 593 aa7.49□□□□□ -1.21
CD44-220ENST00000525688 FRMD6Q96NE9 622 aa7.49□□□□□ -1.21
CD44-220ENST00000525688 CFHR5Q9BXR6 569 aa7.49□□□□□ -1.21
CD44-220ENST00000525688 WWC3Q9ULE0 1092 aa7.49□□□□□ -1.21
CD44-220ENST00000525688 A6NHS1 94 aa7.48□□□□□ -1.21
CD44-220ENST00000525688 TNFRSF21O75509 655 aa7.48□□□□□ -1.21
CD44-220ENST00000525688 KCNQ4P56696 695 aa7.48□□□□□ -1.21
CD44-220ENST00000525688 RUBCNLQ9H714 662 aa7.48□□□□□ -1.21
CD44-220ENST00000525688 GPAMQ9HCL2 828 aa7.48□□□□□ -1.21
CD44-220ENST00000525688 ATP13A2Q9NQ11 1180 aa7.48□□□□□ -1.21
CD44-220ENST00000525688 GJA3Q9Y6H8 435 aa7.48□□□□□ -1.21
CD44-220ENST00000525688 CPNE3O75131 537 aaKnown RBP7.47□□□□□ -1.21
CD44-220ENST00000525688 GNA15P30679 374 aa7.47□□□□□ -1.21
CD44-220ENST00000525688 CMTR1Q8N1G2 835 aaKnown RBP7.47□□□□□ -1.21
CD44-220ENST00000525688 CEP63Q96MT8 703 aa7.47□□□□□ -1.21
CD44-220ENST00000525688 SETDB2Q96T68 719 aa7.47□□□□□ -1.21
CD44-220ENST00000525688 BACH2Q9BYV9 841 aa7.47□□□□□ -1.21
CD44-220ENST00000525688 AAASQ9NRG9 546 aa7.47□□□□□ -1.21
CD44-220ENST00000525688 USP20Q9Y2K6 914 aa7.47□□□□□ -1.21
CD44-220ENST00000525688 UBAP1LF5GYI3 381 aa7.46□□□□□ -1.22
CD44-220ENST00000525688 MAN1A2O60476 641 aa7.46□□□□□ -1.22
CD44-220ENST00000525688 SORBS3O60504 671 aa7.46□□□□□ -1.22
CD44-220ENST00000525688 EFHC2Q5JST6 749 aa7.46□□□□□ -1.22
CD44-220ENST00000525688 LDLRAD1Q5T700 205 aa7.46□□□□□ -1.22
CD44-220ENST00000525688 ZNF438Q7Z4V0 828 aa7.46□□□□□ -1.22
CD44-220ENST00000525688 SNX29Q8TEQ0 813 aa7.46□□□□□ -1.22
CD44-220ENST00000525688 ELP3Q9H9T3 547 aa7.46□□□□□ -1.22
CD44-220ENST00000525688 ZFYVE28Q9HCC9 887 aa7.46□□□□□ -1.22
CD44-220ENST00000525688 BRD7Q9NPI1 651 aa7.46□□□□□ -1.22
CD44-220ENST00000525688 RNF19AQ9NV58 838 aa7.46□□□□□ -1.22
CD44-220ENST00000525688 SLC35F4A4IF30 521 aa7.45□□□□□ -1.22
CD44-220ENST00000525688 EFSO43281 561 aa7.45□□□□□ -1.22
CD44-220ENST00000525688 FAM157BP0CG42 384 aa7.45□□□□□ -1.22
CD44-220ENST00000525688 PSMD2Q13200 908 aa7.45□□□□□ -1.22
CD44-220ENST00000525688 TSNAXIP1Q2TAA8 658 aa7.45□□□□□ -1.22
CD44-220ENST00000525688 FIGNL1Q6PIW4 674 aa7.45□□□□□ -1.22
CD44-220ENST00000525688 GAS2L1Q99501 681 aaPredicted RBP7.45□□□□□ -1.22
CD44-220ENST00000525688 ZCCHC2Q9C0B9 1178 aaKnown RBP7.45□□□□□ -1.22
CD44-220ENST00000525688 MRS2Q9HD23 443 aa7.45□□□□□ -1.22
CD44-220ENST00000525688 SCAMP3O14828 347 aaKnown RBP7.44□□□□□ -1.22
CD44-220ENST00000525688 XYLBO75191 536 aa7.44□□□□□ -1.22
CD44-220ENST00000525688 THBS1P07996 1170 aa7.44□□□□□ -1.22
CD44-220ENST00000525688 UBAP2LQ14157 1087 aaKnown RBP7.44□□□□□ -1.22
CD44-220ENST00000525688 FAM161BQ96MY7 647 aa7.44□□□□□ -1.22
CD44-220ENST00000525688 TMEM63CQ9P1W3 806 aa7.44□□□□□ -1.22
CD44-220ENST00000525688 FOXD3Q9UJU5 478 aaPredicted RBP7.44□□□□□ -1.22
CD44-220ENST00000525688 AK5Q9Y6K8 562 aa7.44□□□□□ -1.22
CD44-220ENST00000525688 PTSQ03393 145 aa7.43□□□□□ -1.22
CD44-220ENST00000525688 LAMC2Q13753 1193 aa7.43□□□□□ -1.22
CD44-220ENST00000525688 NLRP13Q86W25 1043 aa7.43□□□□□ -1.22
CD44-220ENST00000525688 CCDC74AQ96AQ1 378 aa7.43□□□□□ -1.22
CD44-220ENST00000525688 KCNH4Q9UQ05 1017 aa7.43□□□□□ -1.22
CD44-220ENST00000525688 PCDHGC4Q9Y5F7 938 aa7.43□□□□□ -1.22
CD44-220ENST00000525688 CCDC180Q9P1Z9 1646 aa7.42□□□□□ -1.22
CD44-220ENST00000525688 H7C1W4 665 aa7.42□□□□□ -1.22
CD44-220ENST00000525688 GIPC1O14908 333 aa7.42□□□□□ -1.22
CD44-220ENST00000525688 ATXN7O15265 892 aaPredicted RBP7.42□□□□□ -1.22
CD44-220ENST00000525688 ST8SIA5O15466 376 aa7.42□□□□□ -1.22
CD44-220ENST00000525688 PHACTR2O75167 634 aa7.42□□□□□ -1.22
CD44-220ENST00000525688 PMEPA1Q969W9 287 aa7.42□□□□□ -1.22
CD44-220ENST00000525688 KIFC2Q96AC6 838 aa7.42□□□□□ -1.22
CD44-220ENST00000525688 GMCL1Q96IK5 515 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms