RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 TOPBP1Q92547 1522 aa11.68□□□□□ -0.54
SDCBP-208ENST00000520228 H3BM21 787 aa11.67□□□□□ -0.54
SDCBP-208ENST00000520228 TYRO3Q06418 890 aa11.67□□□□□ -0.54
SDCBP-208ENST00000520228 SND1Q7KZF4 910 aaKnown RBP eCLIP11.67□□□□□ -0.54
SDCBP-208ENST00000520228 GLYCTKQ8IVS8 523 aa11.67□□□□□ -0.54
SDCBP-208ENST00000520228 HCN2Q9UL51 889 aa11.67□□□□□ -0.54
SDCBP-208ENST00000520228 PCDHGC4Q9Y5F7 938 aa11.67□□□□□ -0.54
SDCBP-208ENST00000520228 GJA3Q9Y6H8 435 aa11.67□□□□□ -0.54
SDCBP-208ENST00000520228 OPLAHO14841 1288 aa11.66□□□□□ -0.54
SDCBP-208ENST00000520228 FAM157BP0CG42 384 aa11.66□□□□□ -0.54
SDCBP-208ENST00000520228 INPP5BP32019 993 aa11.66□□□□□ -0.54
SDCBP-208ENST00000520228 EIF1AXP47813 144 aaKnown RBP11.66□□□□□ -0.54
SDCBP-208ENST00000520228 NOM1Q5C9Z4 860 aaKnown RBP11.66□□□□□ -0.54
SDCBP-208ENST00000520228 VWA5B2Q8N398 1253 aa11.66□□□□□ -0.54
SDCBP-208ENST00000520228 ATXN7O15265 892 aaPredicted RBP11.65□□□□□ -0.54
SDCBP-208ENST00000520228 EFSO43281 561 aa11.65□□□□□ -0.54
SDCBP-208ENST00000520228 VEGFBP49765 207 aa11.65□□□□□ -0.54
SDCBP-208ENST00000520228 IDH3AP50213 366 aa11.65□□□□□ -0.54
SDCBP-208ENST00000520228 PRDM2Q13029 1718 aa11.65□□□□□ -0.54
SDCBP-208ENST00000520228 DNMBPQ6XZF7 1577 aa11.64□□□□□ -0.55
SDCBP-208ENST00000520228 TERTO14746 1132 aaKnown RBP11.64□□□□□ -0.55
SDCBP-208ENST00000520228 BNIP3LO60238 219 aa11.64□□□□□ -0.55
SDCBP-208ENST00000520228 GRNP28799 593 aaKnown RBP11.64□□□□□ -0.55
SDCBP-208ENST00000520228 TNP2Q05952 138 aa11.64□□□□□ -0.55
SDCBP-208ENST00000520228 SV2AQ7L0J3 742 aa11.64□□□□□ -0.55
SDCBP-208ENST00000520228 GTPBP3Q969Y2 492 aaKnown RBP11.64□□□□□ -0.55
SDCBP-208ENST00000520228 VSIG8P0DPA2 414 aa11.63□□□□□ -0.55
SDCBP-208ENST00000520228 ZAP70P43403 619 aa11.63□□□□□ -0.55
SDCBP-208ENST00000520228 ALKBH2Q6NS38 261 aa11.63□□□□□ -0.55
SDCBP-208ENST00000520228 IFT140Q96RY7 1462 aa11.63□□□□□ -0.55
SDCBP-208ENST00000520228 CDC14CA4D256 554 aa11.62□□□□□ -0.55
SDCBP-208ENST00000520228 FZD6O60353 706 aa11.62□□□□□ -0.55
SDCBP-208ENST00000520228 KCNQ4P56696 695 aa11.62□□□□□ -0.55
SDCBP-208ENST00000520228 ATCAYQ86WG3 371 aa11.62□□□□□ -0.55
SDCBP-208ENST00000520228 CEP63Q96MT8 703 aa11.62□□□□□ -0.55
SDCBP-208ENST00000520228 CFHR5Q9BXR6 569 aa11.62□□□□□ -0.55
SDCBP-208ENST00000520228 MAPTP10636 758 aaKnown RBP11.61□□□□□ -0.55
SDCBP-208ENST00000520228 ARSDP51689 593 aa11.61□□□□□ -0.55
SDCBP-208ENST00000520228 BRD7Q9NPI1 651 aa11.61□□□□□ -0.55
SDCBP-208ENST00000520228 ATXN7L1Q9ULK2 861 aaPredicted RBP11.61□□□□□ -0.55
SDCBP-208ENST00000520228 LAMC2Q13753 1193 aa11.6□□□□□ -0.55
SDCBP-208ENST00000520228 GPR161Q8N6U8 529 aaKnown RBP11.6□□□□□ -0.55
SDCBP-208ENST00000520228 POLA1P09884 1462 aaPredicted RBP11.59□□□□□ -0.55
SDCBP-208ENST00000520228 DCDC2BA2VCK2 349 aa11.59□□□□□ -0.55
SDCBP-208ENST00000520228 GPR25O00155 361 aa11.59□□□□□ -0.55
SDCBP-208ENST00000520228 ABHD17AQ96GS6 310 aa11.59□□□□□ -0.55
SDCBP-208ENST00000520228 STRN4Q9NRL3 753 aa11.59□□□□□ -0.55
SDCBP-208ENST00000520228 BIN2Q9UBW5 565 aaPredicted RBP11.59□□□□□ -0.55
SDCBP-208ENST00000520228 SOGA1O94964 1423 aa11.59□□□□□ -0.55
SDCBP-208ENST00000520228 KHNYNO15037 678 aaKnown RBP11.58□□□□□ -0.56
SDCBP-208ENST00000520228 SFSWAPQ12872 951 aaKnown RBP11.58□□□□□ -0.56
SDCBP-208ENST00000520228 NFX1Q12986 1120 aaKnown RBP11.58□□□□□ -0.56
SDCBP-208ENST00000520228 CCDC87Q9NVE4 849 aa11.58□□□□□ -0.56
SDCBP-208ENST00000520228 CUX1P39880 1505 aa11.58□□□□□ -0.56
SDCBP-208ENST00000520228 ERBB4Q15303 1308 aa11.58□□□□□ -0.56
SDCBP-208ENST00000520228 ZNF608Q9ULD9 1512 aaPredicted RBP11.57□□□□□ -0.56
SDCBP-208ENST00000520228 MZF1P28698 734 aaPredicted RBP11.57□□□□□ -0.56
SDCBP-208ENST00000520228 GAS6Q14393 721 aa11.57□□□□□ -0.56
SDCBP-208ENST00000520228 FOXR1Q6PIV2 292 aa11.57□□□□□ -0.56
SDCBP-208ENST00000520228 C11orf16Q9NQ32 467 aa11.57□□□□□ -0.56
SDCBP-208ENST00000520228 FAM13BQ9NYF5 915 aa11.57□□□□□ -0.56
SDCBP-208ENST00000520228 PHF24Q9UPV7 400 aa11.57□□□□□ -0.56
SDCBP-208ENST00000520228 RTCBQ9Y3I0 505 aaKnown RBP11.57□□□□□ -0.56
SDCBP-208ENST00000520228 KCNMB2Q9Y691 235 aa11.57□□□□□ -0.56
SDCBP-208ENST00000520228 RGL4Q8IZJ4 473 aa11.56□□□□□ -0.56
SDCBP-208ENST00000520228 GPR152Q8TDT2 470 aa11.56□□□□□ -0.56
SDCBP-208ENST00000520228 EDEM1Q92611 657 aa11.56□□□□□ -0.56
SDCBP-208ENST00000520228 TRERF1Q96PN7 1200 aa11.56□□□□□ -0.56
SDCBP-208ENST00000520228 KCNH4Q9UQ05 1017 aa11.56□□□□□ -0.56
SDCBP-208ENST00000520228 USP20Q9Y2K6 914 aa11.56□□□□□ -0.56
SDCBP-208ENST00000520228 FGD5Q6ZNL6 1462 aa11.56□□□□□ -0.56
SDCBP-208ENST00000520228 RAD54L2Q9Y4B4 1467 aa11.56□□□□□ -0.56
SDCBP-208ENST00000520228 WRNQ14191 1432 aaPredicted RBP eCLIP11.55□□□□□ -0.56
SDCBP-208ENST00000520228 PDGFAP04085 211 aa11.55□□□□□ -0.56
SDCBP-208ENST00000520228 EPB42P16452 691 aa11.55□□□□□ -0.56
SDCBP-208ENST00000520228 FAM182BQ5T319 152 aa11.55□□□□□ -0.56
SDCBP-208ENST00000520228 SLC16A10Q8TF71 515 aa11.55□□□□□ -0.56
SDCBP-208ENST00000520228 MARK1Q9P0L2 795 aa11.55□□□□□ -0.56
SDCBP-208ENST00000520228 POLIQ9UNA4 740 aa11.55□□□□□ -0.56
SDCBP-208ENST00000520228 EGFRP00533 1210 aa11.54□□□□□ -0.56
SDCBP-208ENST00000520228 FGFR3P22607 806 aa11.54□□□□□ -0.56
SDCBP-208ENST00000520228 DNM1Q05193 864 aaKnown RBP11.54□□□□□ -0.56
SDCBP-208ENST00000520228 GRIN2CQ14957 1233 aa11.54□□□□□ -0.56
SDCBP-208ENST00000520228 LCE2CQ5TA81 110 aa11.54□□□□□ -0.56
SDCBP-208ENST00000520228 PIK3R5Q8WYR1 880 aa11.54□□□□□ -0.56
SDCBP-208ENST00000520228 NUDT16Q96DE0 195 aaKnown RBP11.54□□□□□ -0.56
SDCBP-208ENST00000520228 DCTN4Q9UJW0 460 aa11.54□□□□□ -0.56
SDCBP-208ENST00000520228 TDRD9Q8NDG6 1382 aaKnown RBP11.54□□□□□ -0.56
SDCBP-208ENST00000520228 AQRO60306 1485 aaKnown RBP eCLIP11.53□□□□□ -0.56
SDCBP-208ENST00000520228 CD33P20138 364 aa11.53□□□□□ -0.56
SDCBP-208ENST00000520228 AAMPQ13685 434 aa11.53□□□□□ -0.56
SDCBP-208ENST00000520228 TRIP4Q15650 581 aaPredicted RBP11.53□□□□□ -0.56
SDCBP-208ENST00000520228 GJD3Q8N144 294 aa11.53□□□□□ -0.56
SDCBP-208ENST00000520228 RBCK1Q9BYM8 510 aa11.53□□□□□ -0.56
SDCBP-208ENST00000520228 BRPF3Q9ULD4 1205 aa11.53□□□□□ -0.56
SDCBP-208ENST00000520228 IGHA2P01877 340 aa11.52□□□□□ -0.57
SDCBP-208ENST00000520228 CTBSQ01459 385 aa11.52□□□□□ -0.57
SDCBP-208ENST00000520228 TMCO4Q5TGY1 634 aa11.52□□□□□ -0.57
SDCBP-208ENST00000520228 CMTR1Q8N1G2 835 aaKnown RBP11.52□□□□□ -0.57
SDCBP-208ENST00000520228 CITED4Q96RK1 184 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms