RNA–Protein interactions for RNA: ENST00000512027.1

DDX41-213, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-213ENST00000512027 RIC1Q4ADV7 1423 aa21.33■■□□□ 1.01
DDX41-213ENST00000512027 TCIRG1Q13488 830 aa21.33■■□□□ 1.01
DDX41-213ENST00000512027 PPP1R42Q7Z4L9 355 aa21.33■■□□□ 1.01
DDX41-213ENST00000512027 NLRP10Q86W26 655 aa21.33■■□□□ 1.01
DDX41-213ENST00000512027 SYNE4Q8N205 404 aa21.33■■□□□ 1.01
DDX41-213ENST00000512027 DDX60Q8IY21 1712 aaKnown RBP21.32■■□□□ 1
DDX41-213ENST00000512027 IL16Q14005 1332 aa21.32■■□□□ 1
DDX41-213ENST00000512027 FANCIQ9NVI1 1328 aa21.32■■□□□ 1
DDX41-213ENST00000512027 ANKRD13DQ6ZTN6 518 aa21.32■■□□□ 1
DDX41-213ENST00000512027 SLC51AQ86UW1 340 aa21.32■■□□□ 1
DDX41-213ENST00000512027 PLBD2Q8NHP8 589 aa21.32■■□□□ 1
DDX41-213ENST00000512027 UTP14AQ9BVJ6 771 aaKnown RBP21.32■■□□□ 1
DDX41-213ENST00000512027 DICER1Q9UPY3 1922 aaKnown RBP21.31■■□□□ 1
DDX41-213ENST00000512027 ATP5J2-PTCD1G3V325 749 aa21.31■■□□□ 1
DDX41-213ENST00000512027 CRY2Q49AN0 593 aa21.31■■□□□ 1
DDX41-213ENST00000512027 HSP90AB3PQ58FF7 597 aa21.31■■□□□ 1
DDX41-213ENST00000512027 SPINK5Q9NQ38 1064 aaPredicted RBP21.31■■□□□ 1
DDX41-213ENST00000512027 NCBP3Q53F19 620 aaKnown RBP21.3■■□□□ 1
DDX41-213ENST00000512027 C7orf43Q8WVR3 580 aa21.3■■□□□ 1
DDX41-213ENST00000512027 TAF1P21675 1872 aa21.29■■□□□ 1
DDX41-213ENST00000512027 LMNB1P20700 586 aa21.29■■□□□ 1
DDX41-213ENST00000512027 TWISTNBQ3B726 338 aaPredicted RBP21.29■■□□□ 1
DDX41-213ENST00000512027 TRMT112Q9UI30 125 aaKnown RBP21.29■■□□□ 1
DDX41-213ENST00000512027 HCLS1P14317 486 aaPredicted RBP21.28■■□□□ 1
DDX41-213ENST00000512027 C1QTNF8P60827 252 aa21.28■■□□□ 1
DDX41-213ENST00000512027 CCDC30Q5VVM6 783 aa21.28■■□□□ 1
DDX41-213ENST00000512027 WDR63Q8IWG1 891 aa21.28■■□□□ 1
DDX41-213ENST00000512027 RPGRQ92834 1020 aaKnown RBP21.28■■□□□ 1
DDX41-213ENST00000512027 NMRK2Q9NPI5 230 aa21.28■■□□□ 1
DDX41-213ENST00000512027 GOLGA2Q08379 1002 aa21.27■■□□□ 1
DDX41-213ENST00000512027 RIC3Q7Z5B4 369 aa21.27■■□□□ 1
DDX41-213ENST00000512027 ISCA1Q9BUE6 129 aa21.27■■□□□ 1
DDX41-213ENST00000512027 TAOK3Q9H2K8 898 aa21.27■■□□□ 1
DDX41-213ENST00000512027 KIF3CO14782 793 aa21.26■□□□□ 0.99
DDX41-213ENST00000512027 CCDC93Q567U6 631 aa21.26■□□□□ 0.99
DDX41-213ENST00000512027 RTL5Q5HYW3 569 aaPredicted RBP21.26■□□□□ 0.99
DDX41-213ENST00000512027 ALDH1B1P30837 517 aa21.25■□□□□ 0.99
DDX41-213ENST00000512027 EXOSC9Q06265 439 aaKnown RBP21.25■□□□□ 0.99
DDX41-213ENST00000512027 SLC10A5Q5PT55 438 aa21.25■□□□□ 0.99
DDX41-213ENST00000512027 G2E3Q7L622 706 aa21.25■□□□□ 0.99
DDX41-213ENST00000512027 NLRP3Q96P20 1036 aa21.25■□□□□ 0.99
DDX41-213ENST00000512027 MYD88Q99836 296 aa21.25■□□□□ 0.99
DDX41-213ENST00000512027 SH3TC1Q8TE82 1336 aa21.25■□□□□ 0.99
DDX41-213ENST00000512027 HOXA10P31260 410 aaPredicted RBP21.24■□□□□ 0.99
DDX41-213ENST00000512027 FAM89AQ96GI7 184 aa21.24■□□□□ 0.99
DDX41-213ENST00000512027 RNF123Q5XPI4 1314 aa21.24■□□□□ 0.99
DDX41-213ENST00000512027 LTBP3Q9NS15 1303 aa21.24■□□□□ 0.99
DDX41-213ENST00000512027 SNED1Q8TER0 1413 aa21.23■□□□□ 0.99
DDX41-213ENST00000512027 SOGA3Q5TF21 947 aa21.23■□□□□ 0.99
DDX41-213ENST00000512027 RBM17Q96I25 401 aaKnown RBP21.23■□□□□ 0.99
DDX41-213ENST00000512027 STK31Q9BXU1 1019 aa21.23■□□□□ 0.99
DDX41-213ENST00000512027 COL4A1P02462 1669 aa21.23■□□□□ 0.99
DDX41-213ENST00000512027 ABCC4O15439 1325 aa21.22■□□□□ 0.99
DDX41-213ENST00000512027 PPEF1O14829 653 aaPredicted RBP21.21■□□□□ 0.99
DDX41-213ENST00000512027 JARID2Q92833 1246 aaPredicted RBP21.21■□□□□ 0.99
DDX41-213ENST00000512027 CRAMP1Q96RY5 1269 aa21.21■□□□□ 0.99
DDX41-213ENST00000512027 ZNF277Q9NRM2 450 aaPredicted RBP21.21■□□□□ 0.99
DDX41-213ENST00000512027 MAP3K2Q9Y2U5 619 aa21.21■□□□□ 0.99
DDX41-213ENST00000512027 ZNF521Q96K83 1311 aa21.21■□□□□ 0.99
DDX41-213ENST00000512027 VAMP4O75379 141 aa21.2■□□□□ 0.98
DDX41-213ENST00000512027 SLC4A2P04920 1241 aa21.2■□□□□ 0.98
DDX41-213ENST00000512027 FKBP4Q02790 459 aaKnown RBP eCLIP21.2■□□□□ 0.98
DDX41-213ENST00000512027 CACNA1FO60840 1977 aa21.19■□□□□ 0.98
DDX41-213ENST00000512027 PI4KAP2A4QPH2 592 aa21.19■□□□□ 0.98
DDX41-213ENST00000512027 DDX58O95786 925 aaKnown RBP21.19■□□□□ 0.98
DDX41-213ENST00000512027 PI4KAP1Q8N8J0 262 aa21.19■□□□□ 0.98
DDX41-213ENST00000512027 METTL22Q9BUU2 404 aaPredicted RBP21.19■□□□□ 0.98
DDX41-213ENST00000512027 RRAGCQ9HB90 399 aa21.19■□□□□ 0.98
DDX41-213ENST00000512027 KDM2BQ8NHM5 1336 aa21.19■□□□□ 0.98
DDX41-213ENST00000512027 ZC3H4Q9UPT8 1303 aaKnown RBP21.19■□□□□ 0.98
DDX41-213ENST00000512027 COL4A5P29400 1685 aa21.18■□□□□ 0.98
DDX41-213ENST00000512027 TRIM28Q13263 835 aaKnown RBP21.18■□□□□ 0.98
DDX41-213ENST00000512027 CHMP4AQ9BY43 222 aa21.18■□□□□ 0.98
DDX41-213ENST00000512027 MYH16Q9H6N6 1097 aa21.18■□□□□ 0.98
DDX41-213ENST00000512027 GLTPD2A6NH11 291 aa21.17■□□□□ 0.98
DDX41-213ENST00000512027 KSR2Q6VAB6 950 aa21.17■□□□□ 0.98
DDX41-213ENST00000512027 RTKN2Q8IZC4 609 aa21.17■□□□□ 0.98
DDX41-213ENST00000512027 CCER2I3L3R5 266 aa21.16■□□□□ 0.98
DDX41-213ENST00000512027 IRS4O14654 1257 aaPredicted RBP21.16■□□□□ 0.98
DDX41-213ENST00000512027 IGKV5-2P06315 115 aa21.16■□□□□ 0.98
DDX41-213ENST00000512027 WDR90Q96KV7 1748 aa21.15■□□□□ 0.98
DDX41-213ENST00000512027 FLIIQ13045 1269 aa21.15■□□□□ 0.98
DDX41-213ENST00000512027 CWF19L2Q2TBE0 894 aaKnown RBP21.15■□□□□ 0.98
DDX41-213ENST00000512027 DDX46Q7L014 1031 aaKnown RBP21.15■□□□□ 0.98
DDX41-213ENST00000512027 CWC25Q9NXE8 425 aaPredicted RBP21.15■□□□□ 0.98
DDX41-213ENST00000512027 LRRC37AA6NMS7 1700 aa21.15■□□□□ 0.98
DDX41-213ENST00000512027 IARSP41252 1262 aaKnown RBP21.14■□□□□ 0.97
DDX41-213ENST00000512027 ZBTB38Q8NAP3 1195 aaPredicted RBP21.14■□□□□ 0.97
DDX41-213ENST00000512027 CCDC191Q8NCU4 936 aa21.14■□□□□ 0.97
DDX41-213ENST00000512027 FKBP5Q13451 457 aaPredicted RBP21.13■□□□□ 0.97
DDX41-213ENST00000512027 GRAPQ13588 217 aa21.13■□□□□ 0.97
DDX41-213ENST00000512027 GRAPLQ8TC17 118 aaPredicted RBP21.13■□□□□ 0.97
DDX41-213ENST00000512027 PSMD1Q99460 953 aa21.13■□□□□ 0.97
DDX41-213ENST00000512027 ATP6V0A2Q9Y487 856 aa21.13■□□□□ 0.97
DDX41-213ENST00000512027 MYH3P11055 1940 aa21.12■□□□□ 0.97
DDX41-213ENST00000512027 ZNF541Q9H0D2 1346 aa21.12■□□□□ 0.97
DDX41-213ENST00000512027 DDNO94850 711 aaPredicted RBP21.12■□□□□ 0.97
DDX41-213ENST00000512027 PCCAP05165 728 aaPredicted RBP21.12■□□□□ 0.97
DDX41-213ENST00000512027 CC2D2BQ6DHV5 1058 aa21.12■□□□□ 0.97
DDX41-213ENST00000512027 CELF1Q92879 486 aaKnown RBP21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms