RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 ABCA3Q99758 1704 aa11.87□□□□□ -0.51
USP53-207ENST00000510852 IBSPP21815 317 aaPredicted RBP11.87□□□□□ -0.51
USP53-207ENST00000510852 RPUSD2Q8IZ73 545 aaKnown RBP11.87□□□□□ -0.51
USP53-207ENST00000510852 STAG1Q8WVM7 1258 aa11.87□□□□□ -0.51
USP53-207ENST00000510852 DHX38Q92620 1227 aaKnown RBP11.87□□□□□ -0.51
USP53-207ENST00000510852 JCADQ9P266 1359 aa11.87□□□□□ -0.51
USP53-207ENST00000510852 BLMP54132 1417 aaPredicted RBP11.86□□□□□ -0.51
USP53-207ENST00000510852 HNRNPUQ00839 825 aaKnown RBP eCLIP11.86□□□□□ -0.51
USP53-207ENST00000510852 TDO2P48775 406 aa11.86□□□□□ -0.51
USP53-207ENST00000510852 ANKRD24Q8TF21 1146 aa11.86□□□□□ -0.51
USP53-207ENST00000510852 FAM83GA6ND36 823 aa11.85□□□□□ -0.51
USP53-207ENST00000510852 HMOX1P09601 288 aa11.85□□□□□ -0.51
USP53-207ENST00000510852 TAGLNQ01995 201 aaKnown RBP11.85□□□□□ -0.51
USP53-207ENST00000510852 FMNL3Q8IVF7 1028 aa11.85□□□□□ -0.51
USP53-207ENST00000510852 ZNF512BQ96KM6 892 aaPredicted RBP11.85□□□□□ -0.51
USP53-207ENST00000510852 EYA1Q99502 592 aa11.85□□□□□ -0.51
USP53-207ENST00000510852 RSPH9Q9H1X1 276 aaPredicted RBP11.85□□□□□ -0.51
USP53-207ENST00000510852 ZNF219Q9P2Y4 722 aaPredicted RBP11.85□□□□□ -0.51
USP53-207ENST00000510852 SENP3-EIF4A1A0A087X0R7 540 aa11.85□□□□□ -0.51
USP53-207ENST00000510852 TMEM88BA6NKF7 163 aa11.85□□□□□ -0.51
USP53-207ENST00000510852 NUTM2BA6NNL0 878 aaPredicted RBP11.85□□□□□ -0.51
USP53-207ENST00000510852 NUTM2EB1AL46 878 aaPredicted RBP11.85□□□□□ -0.51
USP53-207ENST00000510852 NUTM2AQ8IVF1 878 aaPredicted RBP11.85□□□□□ -0.51
USP53-207ENST00000510852 PDILTQ8N807 584 aa11.85□□□□□ -0.51
USP53-207ENST00000510852 TANGO6Q9C0B7 1094 aa11.85□□□□□ -0.51
USP53-207ENST00000510852 FCHSD2O94868 740 aa11.84□□□□□ -0.51
USP53-207ENST00000510852 DDX27Q96GQ7 796 aaKnown RBP11.84□□□□□ -0.51
USP53-207ENST00000510852 NEUROD6Q96NK8 337 aa11.84□□□□□ -0.51
USP53-207ENST00000510852 SPC25Q9HBM1 224 aa11.84□□□□□ -0.51
USP53-207ENST00000510852 ABCC6O95255 1503 aa11.84□□□□□ -0.51
USP53-207ENST00000510852 COL18A1P39060 1754 aa11.84□□□□□ -0.51
USP53-207ENST00000510852 ADAMTS2O95450 1211 aa11.84□□□□□ -0.51
USP53-207ENST00000510852 ERCC5P28715 1186 aaPredicted RBP11.84□□□□□ -0.51
USP53-207ENST00000510852 SULT6B1Q6IMI4 303 aa11.84□□□□□ -0.51
USP53-207ENST00000510852 RUNDC1Q96C34 613 aa11.84□□□□□ -0.51
USP53-207ENST00000510852 IL17RAQ96F46 866 aa11.84□□□□□ -0.51
USP53-207ENST00000510852 IGSF1Q8N6C5 1336 aa11.83□□□□□ -0.52
USP53-207ENST00000510852 RGS3P49796 1198 aa11.83□□□□□ -0.52
USP53-207ENST00000510852 PLEKHF1Q96S99 279 aa11.83□□□□□ -0.52
USP53-207ENST00000510852 SFMBT1Q9UHJ3 866 aa11.83□□□□□ -0.52
USP53-207ENST00000510852 ZRSR2Q15696 482 aaKnown RBP11.82□□□□□ -0.52
USP53-207ENST00000510852 PNNQ9H307 717 aaKnown RBP11.82□□□□□ -0.52
USP53-207ENST00000510852 MKRN1Q9UHC7 482 aaKnown RBP11.82□□□□□ -0.52
USP53-207ENST00000510852 COL4A3BPQ9Y5P4 624 aa11.82□□□□□ -0.52
USP53-207ENST00000510852 PRKAR2BP31323 418 aa11.82□□□□□ -0.52
USP53-207ENST00000510852 C9orf131Q5VYM1 1079 aa11.82□□□□□ -0.52
USP53-207ENST00000510852 PCGF5Q86SE9 256 aa11.82□□□□□ -0.52
USP53-207ENST00000510852 SNRNP27Q8WVK2 155 aaKnown RBP11.82□□□□□ -0.52
USP53-207ENST00000510852 RGPD1P0DJD0 1748 aa11.82□□□□□ -0.52
USP53-207ENST00000510852 CAMTA1Q9Y6Y1 1673 aa11.81□□□□□ -0.52
USP53-207ENST00000510852 APAF1O14727 1248 aa11.81□□□□□ -0.52
USP53-207ENST00000510852 SF3B2Q13435 895 aaKnown RBP11.81□□□□□ -0.52
USP53-207ENST00000510852 NT5DC4Q86YG4 428 aa11.81□□□□□ -0.52
USP53-207ENST00000510852 USHBP1Q8N6Y0 703 aa11.81□□□□□ -0.52
USP53-207ENST00000510852 ZBTB12Q9Y330 459 aaPredicted RBP11.81□□□□□ -0.52
USP53-207ENST00000510852 VAMP1P23763 118 aa11.81□□□□□ -0.52
USP53-207ENST00000510852 CUEDC1Q9NWM3 386 aaPredicted RBP11.81□□□□□ -0.52
USP53-207ENST00000510852 SCINQ9Y6U3 715 aa11.81□□□□□ -0.52
USP53-207ENST00000510852 SPATA31A6Q5VVP1 1343 aa11.81□□□□□ -0.52
USP53-207ENST00000510852 KDRP35968 1356 aa11.81□□□□□ -0.52
USP53-207ENST00000510852 LMO7Q8WWI1 1683 aa11.81□□□□□ -0.52
USP53-207ENST00000510852 VDRP11473 427 aa11.8□□□□□ -0.52
USP53-207ENST00000510852 MS4A1P11836 297 aa11.8□□□□□ -0.52
USP53-207ENST00000510852 MLLT3P42568 568 aaPredicted RBP11.8□□□□□ -0.52
USP53-207ENST00000510852 MAP2K1Q02750 393 aaPredicted RBP11.8□□□□□ -0.52
USP53-207ENST00000510852 MYCBPQ99417 103 aaPredicted RBP11.8□□□□□ -0.52
USP53-207ENST00000510852 BTG4Q9NY30 223 aa11.8□□□□□ -0.52
USP53-207ENST00000510852 SYNPO2Q9UMS6 1093 aa11.8□□□□□ -0.52
USP53-207ENST00000510852 MAPK8IP3Q9UPT6 1336 aa11.8□□□□□ -0.52
USP53-207ENST00000510852 COL5A2P05997 1499 aaPredicted RBP11.8□□□□□ -0.52
USP53-207ENST00000510852 TERF1P54274 439 aa11.8□□□□□ -0.52
USP53-207ENST00000510852 TCP11L2Q8N4U5 519 aa11.8□□□□□ -0.52
USP53-207ENST00000510852 CEP63Q96MT8 703 aa11.8□□□□□ -0.52
USP53-207ENST00000510852 RGPD5Q99666 1765 aa11.8□□□□□ -0.52
USP53-207ENST00000510852 LRRC27Q9C0I9 530 aa11.8□□□□□ -0.52
USP53-207ENST00000510852 NLRP2Q9NX02 1062 aa11.8□□□□□ -0.52
USP53-207ENST00000510852 C7P10643 843 aa11.79□□□□□ -0.52
USP53-207ENST00000510852 RPAINQ86UA6 219 aa11.79□□□□□ -0.52
USP53-207ENST00000510852 PHACTR3Q96KR7 559 aa11.79□□□□□ -0.52
USP53-207ENST00000510852 ZBED9Q6R2W3 1325 aa11.79□□□□□ -0.52
USP53-207ENST00000510852 WDR17Q8IZU2 1322 aa11.79□□□□□ -0.52
USP53-207ENST00000510852 SSR1P43307 286 aaKnown RBP11.79□□□□□ -0.52
USP53-207ENST00000510852 STRN4Q9NRL3 753 aa11.79□□□□□ -0.52
USP53-207ENST00000510852 COL14A1Q05707 1796 aaKnown RBP11.78□□□□□ -0.52
USP53-207ENST00000510852 BMS1Q14692 1282 aaKnown RBP11.78□□□□□ -0.52
USP53-207ENST00000510852 PCDH12Q9NPG4 1184 aa11.78□□□□□ -0.52
USP53-207ENST00000510852 SNRKQ9NRH2 765 aa11.78□□□□□ -0.52
USP53-207ENST00000510852 IQSEC3Q9UPP2 1182 aaPredicted RBP11.78□□□□□ -0.52
USP53-207ENST00000510852 RRP7AQ9Y3A4 280 aaKnown RBP11.78□□□□□ -0.52
USP53-207ENST00000510852 GIGYF1O75420 1035 aaPredicted RBP11.78□□□□□ -0.52
USP53-207ENST00000510852 CD53P19397 219 aa11.78□□□□□ -0.52
USP53-207ENST00000510852 DHX8Q14562 1220 aaKnown RBP11.78□□□□□ -0.52
USP53-207ENST00000510852 TSNAXIP1Q2TAA8 658 aa11.78□□□□□ -0.52
USP53-207ENST00000510852 TRIM34Q9BYJ4 488 aa11.78□□□□□ -0.52
USP53-207ENST00000510852 NCAPD2Q15021 1401 aa11.77□□□□□ -0.52
USP53-207ENST00000510852 MAP9Q49MG5 647 aa11.77□□□□□ -0.52
USP53-207ENST00000510852 LARP1Q6PKG0 1096 aaKnown RBP11.77□□□□□ -0.52
USP53-207ENST00000510852 TOM1L2Q6ZVM7 507 aa11.77□□□□□ -0.52
USP53-207ENST00000510852 FBXO41Q8TF61 875 aa11.77□□□□□ -0.52
USP53-207ENST00000510852 DMGDHQ9UI17 866 aaKnown RBP11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms