RNA–Protein interactions for RNA: ENST00000509409.5

TPM3-219, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 1,248 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-219ENST00000509409 IQCA1LA6NCM1 817 aa20.08■□□□□ 0.81
TPM3-219ENST00000509409 NTSR2O95665 410 aa20.08■□□□□ 0.81
TPM3-219ENST00000509409 IARSP41252 1262 aaKnown RBP20.08■□□□□ 0.81
TPM3-219ENST00000509409 CC2D2BQ6DHV5 1058 aa20.08■□□□□ 0.81
TPM3-219ENST00000509409 LRP10Q7Z4F1 713 aa20.08■□□□□ 0.81
TPM3-219ENST00000509409 TMX4Q9H1E5 349 aaPredicted RBP20.08■□□□□ 0.81
TPM3-219ENST00000509409 HOXA10P31260 410 aaPredicted RBP20.07■□□□□ 0.8
TPM3-219ENST00000509409 KRT24Q2M2I5 525 aa20.07■□□□□ 0.8
TPM3-219ENST00000509409 HSP90AB3PQ58FF7 597 aa20.07■□□□□ 0.8
TPM3-219ENST00000509409 IFFO2Q5TF58 517 aa20.07■□□□□ 0.8
TPM3-219ENST00000509409 CHADLQ6NUI6 762 aa20.07■□□□□ 0.8
TPM3-219ENST00000509409 JDP2Q8WYK2 163 aa20.07■□□□□ 0.8
TPM3-219ENST00000509409 TIAM2Q8IVF5 1701 aa20.07■□□□□ 0.8
TPM3-219ENST00000509409 IBTKQ9P2D0 1353 aaPredicted RBP20.07■□□□□ 0.8
TPM3-219ENST00000509409 CRAMP1Q96RY5 1269 aa20.06■□□□□ 0.8
TPM3-219ENST00000509409 PSMD1Q99460 953 aa20.06■□□□□ 0.8
TPM3-219ENST00000509409 PRKRIP1Q9H875 184 aaPredicted RBP20.06■□□□□ 0.8
TPM3-219ENST00000509409 DDX21Q9NR30 783 aaKnown RBP eCLIP20.06■□□□□ 0.8
TPM3-219ENST00000509409 PPEF1O14829 653 aaPredicted RBP20.05■□□□□ 0.8
TPM3-219ENST00000509409 CACNA1SQ13698 1873 aa20.05■□□□□ 0.8
TPM3-219ENST00000509409 ZNF541Q9H0D2 1346 aa20.04■□□□□ 0.8
TPM3-219ENST00000509409 POTEIP0CG38 1075 aa20.04■□□□□ 0.8
TPM3-219ENST00000509409 POTEJP0CG39 1038 aa20.04■□□□□ 0.8
TPM3-219ENST00000509409 GRIPAP1Q4V328 841 aa20.04■□□□□ 0.8
TPM3-219ENST00000509409 EAPPQ56P03 285 aaPredicted RBP20.04■□□□□ 0.8
TPM3-219ENST00000509409 SLC10A5Q5PT55 438 aa20.04■□□□□ 0.8
TPM3-219ENST00000509409 HDGFL1Q5TGJ6 251 aa20.04■□□□□ 0.8
TPM3-219ENST00000509409 C3orf67Q6ZVT6 689 aa20.04■□□□□ 0.8
TPM3-219ENST00000509409 L3MBTL3Q96JM7 780 aaPredicted RBP20.04■□□□□ 0.8
TPM3-219ENST00000509409 TAF1DQ9H5J8 278 aaPredicted RBP20.04■□□□□ 0.8
TPM3-219ENST00000509409 CLEC11AQ9Y240 323 aa20.04■□□□□ 0.8
TPM3-219ENST00000509409 WDR90Q96KV7 1748 aa20.04■□□□□ 0.8
TPM3-219ENST00000509409 EIF6P56537 245 aaKnown RBP20.03■□□□□ 0.8
TPM3-219ENST00000509409 TCIRG1Q13488 830 aa20.03■□□□□ 0.8
TPM3-219ENST00000509409 CHPF2Q9P2E5 772 aa20.03■□□□□ 0.8
TPM3-219ENST00000509409 TRMT112Q9UI30 125 aaKnown RBP20.03■□□□□ 0.8
TPM3-219ENST00000509409 HACL1Q9UJ83 578 aa20.03■□□□□ 0.8
TPM3-219ENST00000509409 NUP98P52948 1817 aa20.02■□□□□ 0.8
TPM3-219ENST00000509409 FZD9O00144 591 aa20.02■□□□□ 0.8
TPM3-219ENST00000509409 HCLS1P14317 486 aaPredicted RBP20.02■□□□□ 0.8
TPM3-219ENST00000509409 NLRP10Q86W26 655 aa20.02■□□□□ 0.8
TPM3-219ENST00000509409 LDHDQ86WU2 507 aa20.02■□□□□ 0.8
TPM3-219ENST00000509409 LARGE2Q8N3Y3 721 aa20.02■□□□□ 0.8
TPM3-219ENST00000509409 JMYQ8N9B5 988 aa20.02■□□□□ 0.8
TPM3-219ENST00000509409 DICER1Q9UPY3 1922 aaKnown RBP20.02■□□□□ 0.79
TPM3-219ENST00000509409 ARFGEF2Q9Y6D5 1785 aa20.01■□□□□ 0.79
TPM3-219ENST00000509409 ZNF428Q96B54 188 aa20.01■□□□□ 0.79
TPM3-219ENST00000509409 CFAP44Q96MT7 982 aa20.01■□□□□ 0.79
TPM3-219ENST00000509409 GJA3Q9Y6H8 435 aa20.01■□□□□ 0.79
TPM3-219ENST00000509409 RIC1Q4ADV7 1423 aa20.01■□□□□ 0.79
TPM3-219ENST00000509409 APAF1O14727 1248 aa20■□□□□ 0.79
TPM3-219ENST00000509409 HOXB7P09629 217 aa20■□□□□ 0.79
TPM3-219ENST00000509409 DUSP27Q5VZP5 1158 aa20■□□□□ 0.79
TPM3-219ENST00000509409 DBF4Q9UBU7 674 aaPredicted RBP20■□□□□ 0.79
TPM3-219ENST00000509409 RNF123Q5XPI4 1314 aa20■□□□□ 0.79
TPM3-219ENST00000509409 EPHX2P34913 555 aa19.99■□□□□ 0.79
TPM3-219ENST00000509409 ANKRD13DQ6ZTN6 518 aa19.99■□□□□ 0.79
TPM3-219ENST00000509409 GPC2Q8N158 579 aa19.99■□□□□ 0.79
TPM3-219ENST00000509409 BBOX1O75936 387 aa19.98■□□□□ 0.79
TPM3-219ENST00000509409 DDX46Q7L014 1031 aaKnown RBP19.98■□□□□ 0.79
TPM3-219ENST00000509409 SLC51AQ86UW1 340 aa19.98■□□□□ 0.79
TPM3-219ENST00000509409 PLBD2Q8NHP8 589 aa19.98■□□□□ 0.79
TPM3-219ENST00000509409 MBIPQ9NS73 344 aa19.98■□□□□ 0.79
TPM3-219ENST00000509409 ATP6V0A2Q9Y487 856 aa19.98■□□□□ 0.79
TPM3-219ENST00000509409 SH3TC1Q8TE82 1336 aa19.98■□□□□ 0.79
TPM3-219ENST00000509409 PPIP5K2O43314 1243 aa19.97■□□□□ 0.79
TPM3-219ENST00000509409 CALD1Q05682 793 aaKnown RBP19.97■□□□□ 0.79
TPM3-219ENST00000509409 PNMA8AQ86V59 439 aaPredicted RBP19.97■□□□□ 0.79
TPM3-219ENST00000509409 NIM1KQ8IY84 436 aa19.97■□□□□ 0.79
TPM3-219ENST00000509409 CREBZFQ9NS37 354 aa19.97■□□□□ 0.79
TPM3-219ENST00000509409 HYPKQ9NX55 129 aa19.97■□□□□ 0.79
TPM3-219ENST00000509409 ABCC4O15439 1325 aa19.97■□□□□ 0.79
TPM3-219ENST00000509409 LMOD1P29536 600 aaPredicted RBP19.96■□□□□ 0.79
TPM3-219ENST00000509409 SUPT20HQ8NEM7 779 aa19.96■□□□□ 0.79
TPM3-219ENST00000509409 ATP5J2-PTCD1G3V325 749 aa19.95■□□□□ 0.78
TPM3-219ENST00000509409 ELL2O00472 640 aaPredicted RBP19.95■□□□□ 0.78
TPM3-219ENST00000509409 GNAI1P63096 354 aa19.95■□□□□ 0.78
TPM3-219ENST00000509409 AOC3Q16853 763 aa19.95■□□□□ 0.78
TPM3-219ENST00000509409 DPP8Q6V1X1 898 aaPredicted RBP19.95■□□□□ 0.78
TPM3-219ENST00000509409 SP8Q8IXZ3 490 aa19.95■□□□□ 0.78
TPM3-219ENST00000509409 MKRN1Q9UHC7 482 aaKnown RBP19.95■□□□□ 0.78
TPM3-219ENST00000509409 RIC3Q7Z5B4 369 aa19.94■□□□□ 0.78
TPM3-219ENST00000509409 MPNDQ8N594 471 aa19.94■□□□□ 0.78
TPM3-219ENST00000509409 VPS33BQ9H267 617 aa19.94■□□□□ 0.78
TPM3-219ENST00000509409 IFT57Q9NWB7 429 aa19.94■□□□□ 0.78
TPM3-219ENST00000509409 SNED1Q8TER0 1413 aa19.93■□□□□ 0.78
TPM3-219ENST00000509409 ZNF853P0CG23 659 aa19.93■□□□□ 0.78
TPM3-219ENST00000509409 GRAPQ13588 217 aa19.93■□□□□ 0.78
TPM3-219ENST00000509409 GRAPLQ8TC17 118 aaPredicted RBP19.93■□□□□ 0.78
TPM3-219ENST00000509409 FAM89AQ96GI7 184 aa19.93■□□□□ 0.78
TPM3-219ENST00000509409 ISCA1Q9BUE6 129 aa19.93■□□□□ 0.78
TPM3-219ENST00000509409 GOLGA2Q08379 1002 aa19.92■□□□□ 0.78
TPM3-219ENST00000509409 RTL5Q5HYW3 569 aaPredicted RBP19.92■□□□□ 0.78
TPM3-219ENST00000509409 MAP1SQ66K74 1059 aaPredicted RBP19.92■□□□□ 0.78
TPM3-219ENST00000509409 CNTROBQ8N137 903 aa19.92■□□□□ 0.78
TPM3-219ENST00000509409 TMEM88BA6NKF7 163 aa19.91■□□□□ 0.78
TPM3-219ENST00000509409 ITGBL1O95965 494 aaPredicted RBP19.91■□□□□ 0.78
TPM3-219ENST00000509409 HSPA1AP0DMV8 641 aaKnown RBP19.91■□□□□ 0.78
TPM3-219ENST00000509409 HSPA1BP0DMV9 641 aaKnown RBP19.91■□□□□ 0.78
TPM3-219ENST00000509409 EPS15P42566 896 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms