RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 SNED1Q8TER0 1413 aa11.99□□□□□ -0.49
HDAC3-212ENST00000492407 LAMB4A4D0S4 1761 aa11.99□□□□□ -0.49
HDAC3-212ENST00000492407 KDM3BQ7LBC6 1761 aa11.98□□□□□ -0.49
HDAC3-212ENST00000492407 NTSR2O95665 410 aa11.98□□□□□ -0.49
HDAC3-212ENST00000492407 MYL6BP14649 208 aa11.98□□□□□ -0.49
HDAC3-212ENST00000492407 PDIA6Q15084 440 aa11.98□□□□□ -0.49
HDAC3-212ENST00000492407 HSP90AB3PQ58FF7 597 aa11.98□□□□□ -0.49
HDAC3-212ENST00000492407 LRP10Q7Z4F1 713 aa11.98□□□□□ -0.49
HDAC3-212ENST00000492407 NUTM1Q86Y26 1132 aa11.98□□□□□ -0.49
HDAC3-212ENST00000492407 NLRP3Q96P20 1036 aa11.98□□□□□ -0.49
HDAC3-212ENST00000492407 THUMPD2Q9BTF0 503 aaKnown RBP11.98□□□□□ -0.49
HDAC3-212ENST00000492407 TMX4Q9H1E5 349 aaPredicted RBP11.98□□□□□ -0.49
HDAC3-212ENST00000492407 ABCC12Q96J65 1359 aa11.97□□□□□ -0.49
HDAC3-212ENST00000492407 UBN2Q6ZU65 1347 aa11.97□□□□□ -0.49
HDAC3-212ENST00000492407 ITGBL1O95965 494 aaPredicted RBP11.97□□□□□ -0.49
HDAC3-212ENST00000492407 EPHX2P34913 555 aa11.97□□□□□ -0.49
HDAC3-212ENST00000492407 TMPOP42166 694 aaKnown RBP11.97□□□□□ -0.49
HDAC3-212ENST00000492407 EIF6P56537 245 aaKnown RBP11.97□□□□□ -0.49
HDAC3-212ENST00000492407 COL13A1Q5TAT6 717 aaPredicted RBP11.97□□□□□ -0.49
HDAC3-212ENST00000492407 ZBTB3Q9H5J0 574 aa11.97□□□□□ -0.49
HDAC3-212ENST00000492407 CCDC88AQ3V6T2 1871 aa11.97□□□□□ -0.49
HDAC3-212ENST00000492407 SCN4AP35499 1836 aa11.97□□□□□ -0.49
HDAC3-212ENST00000492407 ZNF541Q9H0D2 1346 aa11.96□□□□□ -0.49
HDAC3-212ENST00000492407 TMEM88BA6NKF7 163 aa11.96□□□□□ -0.49
HDAC3-212ENST00000492407 BBOX1O75936 387 aa11.96□□□□□ -0.49
HDAC3-212ENST00000492407 HOXB7P09629 217 aa11.96□□□□□ -0.49
HDAC3-212ENST00000492407 POTEIP0CG38 1075 aa11.96□□□□□ -0.49
HDAC3-212ENST00000492407 POTEJP0CG39 1038 aa11.96□□□□□ -0.49
HDAC3-212ENST00000492407 HSPA1AP0DMV8 641 aaKnown RBP11.96□□□□□ -0.49
HDAC3-212ENST00000492407 HSPA1BP0DMV9 641 aaKnown RBP11.96□□□□□ -0.49
HDAC3-212ENST00000492407 OLFM4Q6UX06 510 aa11.96□□□□□ -0.49
HDAC3-212ENST00000492407 UTP14AQ9BVJ6 771 aaKnown RBP11.96□□□□□ -0.49
HDAC3-212ENST00000492407 MYBBP1AQ9BQG0 1328 aaKnown RBP11.95□□□□□ -0.5
HDAC3-212ENST00000492407 CHL1O00533 1208 aa11.95□□□□□ -0.5
HDAC3-212ENST00000492407 PPEF1O14829 653 aaPredicted RBP11.95□□□□□ -0.5
HDAC3-212ENST00000492407 GPTP24298 496 aa11.95□□□□□ -0.5
HDAC3-212ENST00000492407 SUPT20HQ8NEM7 779 aa11.95□□□□□ -0.5
HDAC3-212ENST00000492407 DDX21Q9NR30 783 aaKnown RBP eCLIP11.95□□□□□ -0.5
HDAC3-212ENST00000492407 ATP6V0A2Q9Y487 856 aa11.95□□□□□ -0.5
HDAC3-212ENST00000492407 CNTNAP1P78357 1384 aa11.94□□□□□ -0.5
HDAC3-212ENST00000492407 EIF2S2P20042 333 aaKnown RBP11.94□□□□□ -0.5
HDAC3-212ENST00000492407 LMOD1P29536 600 aaPredicted RBP11.94□□□□□ -0.5
HDAC3-212ENST00000492407 TMC4Q7Z404 712 aa11.94□□□□□ -0.5
HDAC3-212ENST00000492407 TNS4Q8IZW8 715 aa11.94□□□□□ -0.5
HDAC3-212ENST00000492407 RUNDC1Q96C34 613 aa11.94□□□□□ -0.5
HDAC3-212ENST00000492407 RTFDC1Q9BY42 306 aaPredicted RBP11.94□□□□□ -0.5
HDAC3-212ENST00000492407 CLEC11AQ9Y240 323 aa11.94□□□□□ -0.5
HDAC3-212ENST00000492407 TCIRG1Q13488 830 aa11.93□□□□□ -0.5
HDAC3-212ENST00000492407 EAPPQ56P03 285 aaPredicted RBP11.93□□□□□ -0.5
HDAC3-212ENST00000492407 USP50Q70EL3 339 aaPredicted RBP11.93□□□□□ -0.5
HDAC3-212ENST00000492407 COPS6Q7L5N1 327 aa11.93□□□□□ -0.5
HDAC3-212ENST00000492407 SP8Q8IXZ3 490 aa11.93□□□□□ -0.5
HDAC3-212ENST00000492407 CNTROBQ8N137 903 aa11.93□□□□□ -0.5
HDAC3-212ENST00000492407 LARGE2Q8N3Y3 721 aa11.93□□□□□ -0.5
HDAC3-212ENST00000492407 DLG5Q8TDM6 1919 aa11.93□□□□□ -0.5
HDAC3-212ENST00000492407 RASSF10A6NK89 507 aa11.92□□□□□ -0.5
HDAC3-212ENST00000492407 NLRP10Q86W26 655 aa11.92□□□□□ -0.5
HDAC3-212ENST00000492407 NIM1KQ8IY84 436 aa11.92□□□□□ -0.5
HDAC3-212ENST00000492407 MKRN1Q9UHC7 482 aaKnown RBP11.92□□□□□ -0.5
HDAC3-212ENST00000492407 NUP98P52948 1817 aa11.92□□□□□ -0.5
HDAC3-212ENST00000492407 SH3TC1Q8TE82 1336 aa11.91□□□□□ -0.5
HDAC3-212ENST00000492407 CDHR2Q9BYE9 1310 aa11.91□□□□□ -0.5
HDAC3-212ENST00000492407 PCNTO95613 3336 aa11.91□□□□□ -0.5
HDAC3-212ENST00000492407 WDR43Q15061 677 aaKnown RBP eCLIP11.91□□□□□ -0.5
HDAC3-212ENST00000492407 PROSER3Q2NL68 480 aa11.91□□□□□ -0.5
HDAC3-212ENST00000492407 C3orf67Q6ZVT6 689 aa11.91□□□□□ -0.5
HDAC3-212ENST00000492407 XAGE3Q8WTP9 111 aa11.91□□□□□ -0.5
HDAC3-212ENST00000492407 CHMP4AQ9BY43 222 aa11.91□□□□□ -0.5
HDAC3-212ENST00000492407 PRDM10Q9NQV6 1147 aa11.91□□□□□ -0.5
HDAC3-212ENST00000492407 DBF4Q9UBU7 674 aaPredicted RBP11.91□□□□□ -0.5
HDAC3-212ENST00000492407 ZNRF3Q9ULT6 936 aa11.91□□□□□ -0.5
HDAC3-212ENST00000492407 ADAMTSL1Q8N6G6 1762 aa11.91□□□□□ -0.5
HDAC3-212ENST00000492407 ABCC4O15439 1325 aa11.9□□□□□ -0.5
HDAC3-212ENST00000492407 PPIP5K2O43314 1243 aa11.9□□□□□ -0.5
HDAC3-212ENST00000492407 SCNN1DP51172 638 aa11.9□□□□□ -0.5
HDAC3-212ENST00000492407 TRIM28Q13263 835 aaKnown RBP11.9□□□□□ -0.5
HDAC3-212ENST00000492407 DEFB115Q30KQ5 88 aa11.9□□□□□ -0.5
HDAC3-212ENST00000492407 DPP8Q6V1X1 898 aaPredicted RBP11.9□□□□□ -0.5
HDAC3-212ENST00000492407 DDX46Q7L014 1031 aaKnown RBP11.9□□□□□ -0.5
HDAC3-212ENST00000492407 PLBD2Q8NHP8 589 aa11.9□□□□□ -0.5
HDAC3-212ENST00000492407 CFAP44Q96MT7 982 aa11.9□□□□□ -0.5
HDAC3-212ENST00000492407 TRMT112Q9UI30 125 aaKnown RBP11.9□□□□□ -0.5
HDAC3-212ENST00000492407 TRIM35Q9UPQ4 493 aa11.9□□□□□ -0.5
HDAC3-212ENST00000492407 GJA3Q9Y6H8 435 aa11.9□□□□□ -0.5
HDAC3-212ENST00000492407 HSP90B1P14625 803 aaKnown RBP11.89□□□□□ -0.51
HDAC3-212ENST00000492407 VEGFBP49765 207 aa11.89□□□□□ -0.51
HDAC3-212ENST00000492407 KIAA2012Q0VF49 1180 aa11.89□□□□□ -0.51
HDAC3-212ENST00000492407 GRAPQ13588 217 aa11.89□□□□□ -0.51
HDAC3-212ENST00000492407 TNIP1Q15025 636 aa11.89□□□□□ -0.51
HDAC3-212ENST00000492407 MAP1SQ66K74 1059 aaPredicted RBP11.89□□□□□ -0.51
HDAC3-212ENST00000492407 ANKRD13DQ6ZTN6 518 aa11.89□□□□□ -0.51
HDAC3-212ENST00000492407 MPNDQ8N594 471 aa11.89□□□□□ -0.51
HDAC3-212ENST00000492407 GRAPLQ8TC17 118 aaPredicted RBP11.89□□□□□ -0.51
HDAC3-212ENST00000492407 AIDAQ96BJ3 306 aa11.89□□□□□ -0.51
HDAC3-212ENST00000492407 ADARB2Q9NS39 739 aaKnown RBP11.89□□□□□ -0.51
HDAC3-212ENST00000492407 HYPKQ9NX55 129 aa11.89□□□□□ -0.51
HDAC3-212ENST00000492407 WBP1LQ9NX94 342 aa11.89□□□□□ -0.51
HDAC3-212ENST00000492407 CACNA1SQ13698 1873 aa11.89□□□□□ -0.51
HDAC3-212ENST00000492407 EPS15P42566 896 aa11.88□□□□□ -0.51
HDAC3-212ENST00000492407 CTCFP49711 727 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms