RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 TCIRG1Q13488 830 aa31.91■■■□□ 2.7
UPF3A-209ENST00000492270 HSP90AB3PQ58FF7 597 aa31.91■■■□□ 2.7
UPF3A-209ENST00000492270 PLBD2Q8NHP8 589 aa31.91■■■□□ 2.7
UPF3A-209ENST00000492270 GPBP1L1Q9HC44 474 aaPredicted RBP31.91■■■□□ 2.7
UPF3A-209ENST00000492270 DDX60Q8IY21 1712 aaKnown RBP31.9■■■□□ 2.7
UPF3A-209ENST00000492270 ANKRD13DQ6ZTN6 518 aa31.9■■■□□ 2.7
UPF3A-209ENST00000492270 NLRP10Q86W26 655 aa31.9■■■□□ 2.7
UPF3A-209ENST00000492270 ZNF428Q96B54 188 aa31.9■■■□□ 2.7
UPF3A-209ENST00000492270 CRY2Q49AN0 593 aa31.89■■■□□ 2.7
UPF3A-209ENST00000492270 C3orf67Q6ZVT6 689 aa31.89■■■□□ 2.7
UPF3A-209ENST00000492270 UTP14AQ9BVJ6 771 aaKnown RBP31.89■■■□□ 2.7
UPF3A-209ENST00000492270 FANCIQ9NVI1 1328 aa31.89■■■□□ 2.7
UPF3A-209ENST00000492270 WDR63Q8IWG1 891 aa31.88■■■□□ 2.69
UPF3A-209ENST00000492270 CCDC30Q5VVM6 783 aa31.86■■■□□ 2.69
UPF3A-209ENST00000492270 TCERG1O14776 1098 aaKnown RBP31.85■■■□□ 2.69
UPF3A-209ENST00000492270 LMNB1P20700 586 aa31.85■■■□□ 2.69
UPF3A-209ENST00000492270 TWISTNBQ3B726 338 aaPredicted RBP31.85■■■□□ 2.69
UPF3A-209ENST00000492270 OLFM4Q6UX06 510 aa31.85■■■□□ 2.69
UPF3A-209ENST00000492270 SYNE4Q8N205 404 aa31.85■■■□□ 2.69
UPF3A-209ENST00000492270 C7orf43Q8WVR3 580 aa31.85■■■□□ 2.69
UPF3A-209ENST00000492270 SPINK5Q9NQ38 1064 aaPredicted RBP31.85■■■□□ 2.69
UPF3A-209ENST00000492270 TAF1P21675 1872 aa31.84■■■□□ 2.69
UPF3A-209ENST00000492270 ATP5J2-PTCD1G3V325 749 aa31.84■■■□□ 2.69
UPF3A-209ENST00000492270 CACNA1FO60840 1977 aa31.83■■■□□ 2.69
UPF3A-209ENST00000492270 RPGRQ92834 1020 aaKnown RBP31.83■■■□□ 2.69
UPF3A-209ENST00000492270 ISCA1Q9BUE6 129 aa31.83■■■□□ 2.69
UPF3A-209ENST00000492270 RNF123Q5XPI4 1314 aa31.82■■■□□ 2.68
UPF3A-209ENST00000492270 GOLGA2Q08379 1002 aa31.82■■■□□ 2.68
UPF3A-209ENST00000492270 TRMT112Q9UI30 125 aaKnown RBP31.82■■■□□ 2.68
UPF3A-209ENST00000492270 ALDH1B1P30837 517 aa31.81■■■□□ 2.68
UPF3A-209ENST00000492270 SLC10A5Q5PT55 438 aa31.81■■■□□ 2.68
UPF3A-209ENST00000492270 RIC3Q7Z5B4 369 aa31.81■■■□□ 2.68
UPF3A-209ENST00000492270 HCLS1P14317 486 aaPredicted RBP31.8■■■□□ 2.68
UPF3A-209ENST00000492270 TAOK3Q9H2K8 898 aa31.8■■■□□ 2.68
UPF3A-209ENST00000492270 SH3TC1Q8TE82 1336 aa31.79■■■□□ 2.68
UPF3A-209ENST00000492270 LTBP3Q9NS15 1303 aa31.79■■■□□ 2.68
UPF3A-209ENST00000492270 HOXA10P31260 410 aaPredicted RBP31.79■■■□□ 2.68
UPF3A-209ENST00000492270 C1QTNF8P60827 252 aa31.79■■■□□ 2.68
UPF3A-209ENST00000492270 CCDC93Q567U6 631 aa31.79■■■□□ 2.68
UPF3A-209ENST00000492270 SOGA3Q5TF21 947 aa31.79■■■□□ 2.68
UPF3A-209ENST00000492270 NLRP3Q96P20 1036 aa31.79■■■□□ 2.68
UPF3A-209ENST00000492270 EXOSC9Q06265 439 aaKnown RBP31.78■■■□□ 2.68
UPF3A-209ENST00000492270 SLC51AQ86UW1 340 aa31.78■■■□□ 2.68
UPF3A-209ENST00000492270 CHMP4AQ9BY43 222 aa31.78■■■□□ 2.68
UPF3A-209ENST00000492270 STK31Q9BXU1 1019 aa31.77■■■□□ 2.68
UPF3A-209ENST00000492270 NMRK2Q9NPI5 230 aa31.77■■■□□ 2.68
UPF3A-209ENST00000492270 SNED1Q8TER0 1413 aa31.76■■■□□ 2.68
UPF3A-209ENST00000492270 KIF3CO14782 793 aa31.76■■■□□ 2.67
UPF3A-209ENST00000492270 RBM17Q96I25 401 aaKnown RBP31.76■■■□□ 2.67
UPF3A-209ENST00000492270 MYD88Q99836 296 aa31.76■■■□□ 2.67
UPF3A-209ENST00000492270 ZNF521Q96K83 1311 aa31.75■■■□□ 2.67
UPF3A-209ENST00000492270 G2E3Q7L622 706 aa31.75■■■□□ 2.67
UPF3A-209ENST00000492270 FAM89AQ96GI7 184 aa31.75■■■□□ 2.67
UPF3A-209ENST00000492270 RTL5Q5HYW3 569 aaPredicted RBP31.74■■■□□ 2.67
UPF3A-209ENST00000492270 CRAMP1Q96RY5 1269 aa31.74■■■□□ 2.67
UPF3A-209ENST00000492270 ZC3H4Q9UPT8 1303 aaKnown RBP31.74■■■□□ 2.67
UPF3A-209ENST00000492270 VAMP4O75379 141 aa31.73■■■□□ 2.67
UPF3A-209ENST00000492270 TRIM28Q13263 835 aaKnown RBP31.73■■■□□ 2.67
UPF3A-209ENST00000492270 CCER2I3L3R5 266 aa31.72■■■□□ 2.67
UPF3A-209ENST00000492270 DDX58O95786 925 aaKnown RBP31.72■■■□□ 2.67
UPF3A-209ENST00000492270 MAP3K2Q9Y2U5 619 aa31.72■■■□□ 2.67
UPF3A-209ENST00000492270 ABCC4O15439 1325 aa31.72■■■□□ 2.67
UPF3A-209ENST00000492270 PPEF1O14829 653 aaPredicted RBP31.71■■■□□ 2.67
UPF3A-209ENST00000492270 SLC4A2P04920 1241 aa31.71■■■□□ 2.67
UPF3A-209ENST00000492270 FKBP4Q02790 459 aaKnown RBP eCLIP31.71■■■□□ 2.67
UPF3A-209ENST00000492270 METTL22Q9BUU2 404 aaPredicted RBP31.71■■■□□ 2.67
UPF3A-209ENST00000492270 MYH16Q9H6N6 1097 aa31.71■■■□□ 2.67
UPF3A-209ENST00000492270 KDM2BQ8NHM5 1336 aa31.7■■■□□ 2.66
UPF3A-209ENST00000492270 COL4A1P02462 1669 aa31.7■■■□□ 2.66
UPF3A-209ENST00000492270 PI4KAP2A4QPH2 592 aa31.69■■■□□ 2.66
UPF3A-209ENST00000492270 KSR2Q6VAB6 950 aa31.69■■■□□ 2.66
UPF3A-209ENST00000492270 RTKN2Q8IZC4 609 aa31.69■■■□□ 2.66
UPF3A-209ENST00000492270 PI4KAP1Q8N8J0 262 aa31.69■■■□□ 2.66
UPF3A-209ENST00000492270 ZNF277Q9NRM2 450 aaPredicted RBP31.68■■■□□ 2.66
UPF3A-209ENST00000492270 MYH3P11055 1940 aa31.66■■■□□ 2.66
UPF3A-209ENST00000492270 LRRC37AA6NMS7 1700 aa31.66■■■□□ 2.66
UPF3A-209ENST00000492270 GLTPD2A6NH11 291 aa31.65■■■□□ 2.66
UPF3A-209ENST00000492270 IRS4O14654 1257 aaPredicted RBP31.65■■■□□ 2.66
UPF3A-209ENST00000492270 FLIIQ13045 1269 aa31.65■■■□□ 2.66
UPF3A-209ENST00000492270 CCDC191Q8NCU4 936 aa31.65■■■□□ 2.66
UPF3A-209ENST00000492270 JARID2Q92833 1246 aaPredicted RBP31.65■■■□□ 2.66
UPF3A-209ENST00000492270 RRAGCQ9HB90 399 aa31.65■■■□□ 2.66
UPF3A-209ENST00000492270 WDR90Q96KV7 1748 aa31.65■■■□□ 2.66
UPF3A-209ENST00000492270 IGKV5-2P06315 115 aa31.64■■■□□ 2.66
UPF3A-209ENST00000492270 ZBTB38Q8NAP3 1195 aaPredicted RBP31.64■■■□□ 2.66
UPF3A-209ENST00000492270 CWC25Q9NXE8 425 aaPredicted RBP31.64■■■□□ 2.66
UPF3A-209ENST00000492270 COL4A5P29400 1685 aa31.64■■■□□ 2.65
UPF3A-209ENST00000492270 CC2D2BQ6DHV5 1058 aa31.63■■■□□ 2.65
UPF3A-209ENST00000492270 DDX46Q7L014 1031 aaKnown RBP31.63■■■□□ 2.65
UPF3A-209ENST00000492270 PSMD1Q99460 953 aa31.62■■■□□ 2.65
UPF3A-209ENST00000492270 PCCAP05165 728 aaPredicted RBP31.61■■■□□ 2.65
UPF3A-209ENST00000492270 IARSP41252 1262 aaKnown RBP31.61■■■□□ 2.65
UPF3A-209ENST00000492270 GRAPQ13588 217 aa31.61■■■□□ 2.65
UPF3A-209ENST00000492270 SF3B3Q15393 1217 aaKnown RBP31.61■■■□□ 2.65
UPF3A-209ENST00000492270 GRAPLQ8TC17 118 aaPredicted RBP31.61■■■□□ 2.65
UPF3A-209ENST00000492270 ATP6V0A2Q9Y487 856 aa31.61■■■□□ 2.65
UPF3A-209ENST00000492270 FKBP5Q13451 457 aaPredicted RBP31.6■■■□□ 2.65
UPF3A-209ENST00000492270 CWF19L2Q2TBE0 894 aaKnown RBP31.6■■■□□ 2.65
UPF3A-209ENST00000492270 DIEXFQ68CQ4 756 aaKnown RBP31.59■■■□□ 2.65
UPF3A-209ENST00000492270 BBOX1O75936 387 aa31.58■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms