RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 TRIM35Q9UPQ4 493 aa20.59■□□□□ 0.89
SMPD4-220ENST00000491319 ZNF541Q9H0D2 1346 aa20.58■□□□□ 0.89
SMPD4-220ENST00000491319 COL4A5P29400 1685 aa20.58■□□□□ 0.89
SMPD4-220ENST00000491319 POTEIP0CG38 1075 aa20.57■□□□□ 0.88
SMPD4-220ENST00000491319 POTEJP0CG39 1038 aa20.57■□□□□ 0.88
SMPD4-220ENST00000491319 C3orf67Q6ZVT6 689 aa20.57■□□□□ 0.88
SMPD4-220ENST00000491319 SLC51AQ86UW1 340 aa20.57■□□□□ 0.88
SMPD4-220ENST00000491319 DDX60Q8IY21 1712 aaKnown RBP20.57■□□□□ 0.88
SMPD4-220ENST00000491319 ADAMTS8Q9UP79 889 aa20.57■□□□□ 0.88
SMPD4-220ENST00000491319 LAS1LQ9Y4W2 734 aaKnown RBP20.57■□□□□ 0.88
SMPD4-220ENST00000491319 ADAMTSL1Q8N6G6 1762 aa20.57■□□□□ 0.88
SMPD4-220ENST00000491319 CHL1O00533 1208 aa20.56■□□□□ 0.88
SMPD4-220ENST00000491319 HOXA10P31260 410 aaPredicted RBP20.56■□□□□ 0.88
SMPD4-220ENST00000491319 IARSP41252 1262 aaKnown RBP20.56■□□□□ 0.88
SMPD4-220ENST00000491319 PARP10Q53GL7 1025 aa20.56■□□□□ 0.88
SMPD4-220ENST00000491319 PPP1R42Q7Z4L9 355 aa20.56■□□□□ 0.88
SMPD4-220ENST00000491319 SYNE4Q8N205 404 aa20.56■□□□□ 0.88
SMPD4-220ENST00000491319 PRKRIP1Q9H875 184 aaPredicted RBP20.56■□□□□ 0.88
SMPD4-220ENST00000491319 XAGE3Q8WTP9 111 aa20.55■□□□□ 0.88
SMPD4-220ENST00000491319 L3MBTL3Q96JM7 780 aaPredicted RBP20.55■□□□□ 0.88
SMPD4-220ENST00000491319 AIMP1Q12904 312 aaKnown RBP20.54■□□□□ 0.88
SMPD4-220ENST00000491319 IFFO2Q5TF58 517 aa20.54■□□□□ 0.88
SMPD4-220ENST00000491319 COPS6Q7L5N1 327 aa20.54■□□□□ 0.88
SMPD4-220ENST00000491319 JMYQ8N9B5 988 aa20.54■□□□□ 0.88
SMPD4-220ENST00000491319 PSMD1Q99460 953 aa20.54■□□□□ 0.88
SMPD4-220ENST00000491319 RBM17Q96I25 401 aaKnown RBP20.53■□□□□ 0.88
SMPD4-220ENST00000491319 UTP14AQ9BVJ6 771 aaKnown RBP20.53■□□□□ 0.88
SMPD4-220ENST00000491319 LTBP1Q14766 1721 aa20.53■□□□□ 0.88
SMPD4-220ENST00000491319 IQCA1LA6NCM1 817 aa20.52■□□□□ 0.88
SMPD4-220ENST00000491319 PPEF1O14829 653 aaPredicted RBP20.52■□□□□ 0.88
SMPD4-220ENST00000491319 CHADLQ6NUI6 762 aa20.52■□□□□ 0.88
SMPD4-220ENST00000491319 CRAMP1Q96RY5 1269 aa20.52■□□□□ 0.88
SMPD4-220ENST00000491319 DDX21Q9NR30 783 aaKnown RBP eCLIP20.52■□□□□ 0.88
SMPD4-220ENST00000491319 CHPF2Q9P2E5 772 aa20.52■□□□□ 0.88
SMPD4-220ENST00000491319 PCNTO95613 3336 aa20.52■□□□□ 0.87
SMPD4-220ENST00000491319 FZD9O00144 591 aa20.51■□□□□ 0.87
SMPD4-220ENST00000491319 TCERG1O14776 1098 aaKnown RBP20.51■□□□□ 0.87
SMPD4-220ENST00000491319 CC2D2BQ6DHV5 1058 aa20.51■□□□□ 0.87
SMPD4-220ENST00000491319 TAF1DQ9H5J8 278 aaPredicted RBP20.51■□□□□ 0.87
SMPD4-220ENST00000491319 HSP90AB3PQ58FF7 597 aa20.5■□□□□ 0.87
SMPD4-220ENST00000491319 HDGFL1Q5TGJ6 251 aa20.5■□□□□ 0.87
SMPD4-220ENST00000491319 NLRP10Q86W26 655 aa20.5■□□□□ 0.87
SMPD4-220ENST00000491319 NLRP3Q96P20 1036 aa20.5■□□□□ 0.87
SMPD4-220ENST00000491319 RNF123Q5XPI4 1314 aa20.5■□□□□ 0.87
SMPD4-220ENST00000491319 LRRC37AA6NMS7 1700 aa20.5■□□□□ 0.87
SMPD4-220ENST00000491319 SLC10A5Q5PT55 438 aa20.49■□□□□ 0.87
SMPD4-220ENST00000491319 ABCC4O15439 1325 aa20.49■□□□□ 0.87
SMPD4-220ENST00000491319 TCIRG1Q13488 830 aa20.48■□□□□ 0.87
SMPD4-220ENST00000491319 LDHDQ86WU2 507 aa20.48■□□□□ 0.87
SMPD4-220ENST00000491319 JDP2Q8WYK2 163 aa20.48■□□□□ 0.87
SMPD4-220ENST00000491319 ZNF428Q96B54 188 aa20.48■□□□□ 0.87
SMPD4-220ENST00000491319 CFAP44Q96MT7 982 aa20.48■□□□□ 0.87
SMPD4-220ENST00000491319 HACL1Q9UJ83 578 aa20.48■□□□□ 0.87
SMPD4-220ENST00000491319 HOXB7P09629 217 aa20.47■□□□□ 0.87
SMPD4-220ENST00000491319 HCLS1P14317 486 aaPredicted RBP20.47■□□□□ 0.87
SMPD4-220ENST00000491319 EAPPQ56P03 285 aaPredicted RBP20.47■□□□□ 0.87
SMPD4-220ENST00000491319 MBIPQ9NS73 344 aa20.47■□□□□ 0.87
SMPD4-220ENST00000491319 APAF1O14727 1248 aa20.46■□□□□ 0.87
SMPD4-220ENST00000491319 EPHX2P34913 555 aa20.46■□□□□ 0.87
SMPD4-220ENST00000491319 GRIPAP1Q4V328 841 aa20.46■□□□□ 0.87
SMPD4-220ENST00000491319 GPC2Q8N158 579 aa20.46■□□□□ 0.87
SMPD4-220ENST00000491319 LARGE2Q8N3Y3 721 aa20.46■□□□□ 0.87
SMPD4-220ENST00000491319 TRMT112Q9UI30 125 aaKnown RBP20.46■□□□□ 0.87
SMPD4-220ENST00000491319 DUSP27Q5VZP5 1158 aa20.45■□□□□ 0.86
SMPD4-220ENST00000491319 ATP6V0A2Q9Y487 856 aa20.45■□□□□ 0.86
SMPD4-220ENST00000491319 SH3TC1Q8TE82 1336 aa20.45■□□□□ 0.86
SMPD4-220ENST00000491319 PASKQ96RG2 1323 aa20.45■□□□□ 0.86
SMPD4-220ENST00000491319 COL4A1P02462 1669 aa20.45■□□□□ 0.86
SMPD4-220ENST00000491319 DUOX1Q9NRD9 1551 aa20.44■□□□□ 0.86
SMPD4-220ENST00000491319 EIF6P56537 245 aaKnown RBP20.44■□□□□ 0.86
SMPD4-220ENST00000491319 PLBD2Q8NHP8 589 aa20.44■□□□□ 0.86
SMPD4-220ENST00000491319 CREBZFQ9NS37 354 aa20.44■□□□□ 0.86
SMPD4-220ENST00000491319 DBF4Q9UBU7 674 aaPredicted RBP20.44■□□□□ 0.86
SMPD4-220ENST00000491319 GJA3Q9Y6H8 435 aa20.44■□□□□ 0.86
SMPD4-220ENST00000491319 ZNF853P0CG23 659 aa20.43■□□□□ 0.86
SMPD4-220ENST00000491319 ANKRD13DQ6ZTN6 518 aa20.43■□□□□ 0.86
SMPD4-220ENST00000491319 TRPM7Q96QT4 1865 aa20.43■□□□□ 0.86
SMPD4-220ENST00000491319 PPIP5K2O43314 1243 aa20.42■□□□□ 0.86
SMPD4-220ENST00000491319 AOC3Q16853 763 aa20.42■□□□□ 0.86
SMPD4-220ENST00000491319 NIM1KQ8IY84 436 aa20.42■□□□□ 0.86
SMPD4-220ENST00000491319 CLEC11AQ9Y240 323 aa20.42■□□□□ 0.86
SMPD4-220ENST00000491319 ATP5J2-PTCD1G3V325 749 aa20.41■□□□□ 0.86
SMPD4-220ENST00000491319 ITGBL1O95965 494 aaPredicted RBP20.41■□□□□ 0.86
SMPD4-220ENST00000491319 ISCA1Q9BUE6 129 aa20.41■□□□□ 0.86
SMPD4-220ENST00000491319 TMX4Q9H1E5 349 aaPredicted RBP20.41■□□□□ 0.86
SMPD4-220ENST00000491319 IFT57Q9NWB7 429 aa20.41■□□□□ 0.86
SMPD4-220ENST00000491319 HYPKQ9NX55 129 aa20.41■□□□□ 0.86
SMPD4-220ENST00000491319 MKRN1Q9UHC7 482 aaKnown RBP20.41■□□□□ 0.86
SMPD4-220ENST00000491319 SCNN1DP51172 638 aa20.4■□□□□ 0.86
SMPD4-220ENST00000491319 DDX46Q7L014 1031 aaKnown RBP20.4■□□□□ 0.86
SMPD4-220ENST00000491319 PNMA8AQ86V59 439 aaPredicted RBP20.4■□□□□ 0.86
SMPD4-220ENST00000491319 BBOX1O75936 387 aa20.39■□□□□ 0.85
SMPD4-220ENST00000491319 HSPA1AP0DMV8 641 aaKnown RBP20.39■□□□□ 0.85
SMPD4-220ENST00000491319 HSPA1BP0DMV9 641 aaKnown RBP20.39■□□□□ 0.85
SMPD4-220ENST00000491319 GNAI1P63096 354 aa20.39■□□□□ 0.85
SMPD4-220ENST00000491319 GRAPQ13588 217 aa20.39■□□□□ 0.85
SMPD4-220ENST00000491319 MAP1SQ66K74 1059 aaPredicted RBP20.39■□□□□ 0.85
SMPD4-220ENST00000491319 SP8Q8IXZ3 490 aa20.39■□□□□ 0.85
SMPD4-220ENST00000491319 GRAPLQ8TC17 118 aaPredicted RBP20.39■□□□□ 0.85
SMPD4-220ENST00000491319 FAM89AQ96GI7 184 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 112.2 ms