RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 PRKRIP1Q9H875 184 aaPredicted RBP17.85■□□□□ 0.45
COL6A3-211ENST00000491233 ADAMTS8Q9UP79 889 aa17.85■□□□□ 0.45
COL6A3-211ENST00000491233 LAS1LQ9Y4W2 734 aaKnown RBP17.85■□□□□ 0.45
COL6A3-211ENST00000491233 ZNF541Q9H0D2 1346 aa17.84■□□□□ 0.45
COL6A3-211ENST00000491233 PARP10Q53GL7 1025 aa17.84■□□□□ 0.45
COL6A3-211ENST00000491233 PPP1R42Q7Z4L9 355 aa17.84■□□□□ 0.45
COL6A3-211ENST00000491233 CHL1O00533 1208 aa17.83■□□□□ 0.44
COL6A3-211ENST00000491233 HOXA10P31260 410 aaPredicted RBP17.83■□□□□ 0.44
COL6A3-211ENST00000491233 IARSP41252 1262 aaKnown RBP17.83■□□□□ 0.44
COL6A3-211ENST00000491233 C3orf67Q6ZVT6 689 aa17.83■□□□□ 0.44
COL6A3-211ENST00000491233 XAGE3Q8WTP9 111 aa17.83■□□□□ 0.44
COL6A3-211ENST00000491233 COL4A5P29400 1685 aa17.83■□□□□ 0.44
COL6A3-211ENST00000491233 AIMP1Q12904 312 aaKnown RBP17.82■□□□□ 0.44
COL6A3-211ENST00000491233 COPS6Q7L5N1 327 aa17.82■□□□□ 0.44
COL6A3-211ENST00000491233 SYNE4Q8N205 404 aa17.82■□□□□ 0.44
COL6A3-211ENST00000491233 DDX60Q8IY21 1712 aaKnown RBP17.81■□□□□ 0.44
COL6A3-211ENST00000491233 POTEIP0CG38 1075 aa17.81■□□□□ 0.44
COL6A3-211ENST00000491233 POTEJP0CG39 1038 aa17.81■□□□□ 0.44
COL6A3-211ENST00000491233 CC2D2BQ6DHV5 1058 aa17.81■□□□□ 0.44
COL6A3-211ENST00000491233 SLC51AQ86UW1 340 aa17.81■□□□□ 0.44
COL6A3-211ENST00000491233 RBM17Q96I25 401 aaKnown RBP17.81■□□□□ 0.44
COL6A3-211ENST00000491233 L3MBTL3Q96JM7 780 aaPredicted RBP17.81■□□□□ 0.44
COL6A3-211ENST00000491233 UTP14AQ9BVJ6 771 aaKnown RBP17.81■□□□□ 0.44
COL6A3-211ENST00000491233 DDX21Q9NR30 783 aaKnown RBP eCLIP17.81■□□□□ 0.44
COL6A3-211ENST00000491233 ADAMTSL1Q8N6G6 1762 aa17.81■□□□□ 0.44
COL6A3-211ENST00000491233 IQCA1LA6NCM1 817 aa17.8■□□□□ 0.44
COL6A3-211ENST00000491233 PPEF1O14829 653 aaPredicted RBP17.8■□□□□ 0.44
COL6A3-211ENST00000491233 HSP90AB3PQ58FF7 597 aa17.8■□□□□ 0.44
COL6A3-211ENST00000491233 CHADLQ6NUI6 762 aa17.8■□□□□ 0.44
COL6A3-211ENST00000491233 CRAMP1Q96RY5 1269 aa17.8■□□□□ 0.44
COL6A3-211ENST00000491233 PSMD1Q99460 953 aa17.8■□□□□ 0.44
COL6A3-211ENST00000491233 CHPF2Q9P2E5 772 aa17.8■□□□□ 0.44
COL6A3-211ENST00000491233 RNF123Q5XPI4 1314 aa17.79■□□□□ 0.44
COL6A3-211ENST00000491233 HDGFL1Q5TGJ6 251 aa17.79■□□□□ 0.44
COL6A3-211ENST00000491233 JMYQ8N9B5 988 aa17.79■□□□□ 0.44
COL6A3-211ENST00000491233 NLRP3Q96P20 1036 aa17.79■□□□□ 0.44
COL6A3-211ENST00000491233 TAF1P21675 1872 aa17.79■□□□□ 0.44
COL6A3-211ENST00000491233 TCERG1O14776 1098 aaKnown RBP17.78■□□□□ 0.44
COL6A3-211ENST00000491233 HOXB7P09629 217 aa17.78■□□□□ 0.44
COL6A3-211ENST00000491233 NLRP10Q86W26 655 aa17.78■□□□□ 0.44
COL6A3-211ENST00000491233 TAF1DQ9H5J8 278 aaPredicted RBP17.78■□□□□ 0.44
COL6A3-211ENST00000491233 ABCC4O15439 1325 aa17.77■□□□□ 0.44
COL6A3-211ENST00000491233 FZD9O00144 591 aa17.77■□□□□ 0.44
COL6A3-211ENST00000491233 TCIRG1Q13488 830 aa17.77■□□□□ 0.44
COL6A3-211ENST00000491233 SLC10A5Q5PT55 438 aa17.77■□□□□ 0.44
COL6A3-211ENST00000491233 IFFO2Q5TF58 517 aa17.77■□□□□ 0.44
COL6A3-211ENST00000491233 JDP2Q8WYK2 163 aa17.77■□□□□ 0.44
COL6A3-211ENST00000491233 CFAP44Q96MT7 982 aa17.77■□□□□ 0.44
COL6A3-211ENST00000491233 LTBP1Q14766 1721 aa17.77■□□□□ 0.44
COL6A3-211ENST00000491233 LRRC37AA6NMS7 1700 aa17.76■□□□□ 0.43
COL6A3-211ENST00000491233 LDHDQ86WU2 507 aa17.76■□□□□ 0.43
COL6A3-211ENST00000491233 MBIPQ9NS73 344 aa17.76■□□□□ 0.43
COL6A3-211ENST00000491233 HACL1Q9UJ83 578 aa17.76■□□□□ 0.43
COL6A3-211ENST00000491233 SH3TC1Q8TE82 1336 aa17.75■□□□□ 0.43
COL6A3-211ENST00000491233 APAF1O14727 1248 aa17.75■□□□□ 0.43
COL6A3-211ENST00000491233 HCLS1P14317 486 aaPredicted RBP17.75■□□□□ 0.43
COL6A3-211ENST00000491233 GRIPAP1Q4V328 841 aa17.75■□□□□ 0.43
COL6A3-211ENST00000491233 DBF4Q9UBU7 674 aaPredicted RBP17.75■□□□□ 0.43
COL6A3-211ENST00000491233 TRMT112Q9UI30 125 aaKnown RBP17.75■□□□□ 0.43
COL6A3-211ENST00000491233 EPHX2P34913 555 aa17.74■□□□□ 0.43
COL6A3-211ENST00000491233 EAPPQ56P03 285 aaPredicted RBP17.74■□□□□ 0.43
COL6A3-211ENST00000491233 DUSP27Q5VZP5 1158 aa17.74■□□□□ 0.43
COL6A3-211ENST00000491233 GPC2Q8N158 579 aa17.74■□□□□ 0.43
COL6A3-211ENST00000491233 LARGE2Q8N3Y3 721 aa17.74■□□□□ 0.43
COL6A3-211ENST00000491233 PLBD2Q8NHP8 589 aa17.74■□□□□ 0.43
COL6A3-211ENST00000491233 ZNF428Q96B54 188 aa17.74■□□□□ 0.43
COL6A3-211ENST00000491233 ATP6V0A2Q9Y487 856 aa17.74■□□□□ 0.43
COL6A3-211ENST00000491233 EIF6P56537 245 aaKnown RBP17.73■□□□□ 0.43
COL6A3-211ENST00000491233 GJA3Q9Y6H8 435 aa17.73■□□□□ 0.43
COL6A3-211ENST00000491233 DUOX1Q9NRD9 1551 aa17.72■□□□□ 0.43
COL6A3-211ENST00000491233 PPIP5K2O43314 1243 aa17.72■□□□□ 0.43
COL6A3-211ENST00000491233 ZNF853P0CG23 659 aa17.72■□□□□ 0.43
COL6A3-211ENST00000491233 NIM1KQ8IY84 436 aa17.72■□□□□ 0.43
COL6A3-211ENST00000491233 TMX4Q9H1E5 349 aaPredicted RBP17.72■□□□□ 0.43
COL6A3-211ENST00000491233 IFT57Q9NWB7 429 aa17.72■□□□□ 0.43
COL6A3-211ENST00000491233 PASKQ96RG2 1323 aa17.72■□□□□ 0.43
COL6A3-211ENST00000491233 GNAI1P63096 354 aa17.71■□□□□ 0.43
COL6A3-211ENST00000491233 ANKRD13DQ6ZTN6 518 aa17.71■□□□□ 0.43
COL6A3-211ENST00000491233 ISCA1Q9BUE6 129 aa17.71■□□□□ 0.43
COL6A3-211ENST00000491233 CREBZFQ9NS37 354 aa17.71■□□□□ 0.43
COL6A3-211ENST00000491233 HYPKQ9NX55 129 aa17.71■□□□□ 0.43
COL6A3-211ENST00000491233 COL4A1P02462 1669 aa17.71■□□□□ 0.42
COL6A3-211ENST00000491233 ATP5J2-PTCD1G3V325 749 aa17.7■□□□□ 0.42
COL6A3-211ENST00000491233 CALD1Q05682 793 aaKnown RBP17.7■□□□□ 0.42
COL6A3-211ENST00000491233 GRAPQ13588 217 aa17.7■□□□□ 0.42
COL6A3-211ENST00000491233 AOC3Q16853 763 aa17.7■□□□□ 0.42
COL6A3-211ENST00000491233 DDX46Q7L014 1031 aaKnown RBP17.7■□□□□ 0.42
COL6A3-211ENST00000491233 PNMA8AQ86V59 439 aaPredicted RBP17.7■□□□□ 0.42
COL6A3-211ENST00000491233 GRAPLQ8TC17 118 aaPredicted RBP17.7■□□□□ 0.42
COL6A3-211ENST00000491233 CLEC11AQ9Y240 323 aa17.7■□□□□ 0.42
COL6A3-211ENST00000491233 BBOX1O75936 387 aa17.69■□□□□ 0.42
COL6A3-211ENST00000491233 LMOD1P29536 600 aaPredicted RBP17.69■□□□□ 0.42
COL6A3-211ENST00000491233 SUPT20HQ8NEM7 779 aa17.69■□□□□ 0.42
COL6A3-211ENST00000491233 ELL2O00472 640 aaPredicted RBP17.68■□□□□ 0.42
COL6A3-211ENST00000491233 SCNN1DP51172 638 aa17.68■□□□□ 0.42
COL6A3-211ENST00000491233 DPP8Q6V1X1 898 aaPredicted RBP17.68■□□□□ 0.42
COL6A3-211ENST00000491233 SP8Q8IXZ3 490 aa17.68■□□□□ 0.42
COL6A3-211ENST00000491233 FAM89AQ96GI7 184 aa17.68■□□□□ 0.42
COL6A3-211ENST00000491233 RTFDC1Q9BY42 306 aaPredicted RBP17.68■□□□□ 0.42
COL6A3-211ENST00000491233 MKRN1Q9UHC7 482 aaKnown RBP17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms