RNA–Protein interactions for RNA: ENST00000486159.5

TMEM39A-208, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-208ENST00000486159 TPTE2Q6XPS3 522 aa12.3□□□□□ -0.44
TMEM39A-208ENST00000486159 CCDC146Q8IYE0 955 aa12.3□□□□□ -0.44
TMEM39A-208ENST00000486159 SMC1BQ8NDV3 1235 aa12.3□□□□□ -0.44
TMEM39A-208ENST00000486159 NECTIN2Q92692 538 aa12.3□□□□□ -0.44
TMEM39A-208ENST00000486159 KLRG1Q96E93 195 aa12.3□□□□□ -0.44
TMEM39A-208ENST00000486159 ZNF277Q9NRM2 450 aaPredicted RBP12.3□□□□□ -0.44
TMEM39A-208ENST00000486159 PDZRN3Q9UPQ7 1066 aa12.3□□□□□ -0.44
TMEM39A-208ENST00000486159 ZNF652Q9Y2D9 606 aa12.3□□□□□ -0.44
TMEM39A-208ENST00000486159 ZC3H4Q9UPT8 1303 aaKnown RBP12.3□□□□□ -0.44
TMEM39A-208ENST00000486159 NPR1P16066 1061 aa12.29□□□□□ -0.44
TMEM39A-208ENST00000486159 RIPK4P57078 832 aa12.29□□□□□ -0.44
TMEM39A-208ENST00000486159 SUSD4Q5VX71 490 aa12.29□□□□□ -0.44
TMEM39A-208ENST00000486159 LRP10Q7Z4F1 713 aa12.29□□□□□ -0.44
TMEM39A-208ENST00000486159 MAP3K15Q6ZN16 1313 aa12.29□□□□□ -0.44
TMEM39A-208ENST00000486159 ZNF541Q9H0D2 1346 aa12.29□□□□□ -0.44
TMEM39A-208ENST00000486159 TCERG1O14776 1098 aaKnown RBP12.28□□□□□ -0.44
TMEM39A-208ENST00000486159 EIF2S2P20042 333 aaKnown RBP12.28□□□□□ -0.44
TMEM39A-208ENST00000486159 PDIA6Q15084 440 aa12.28□□□□□ -0.44
TMEM39A-208ENST00000486159 NEUROD2Q15784 382 aa12.28□□□□□ -0.44
TMEM39A-208ENST00000486159 TSPYL4Q9UJ04 414 aa12.28□□□□□ -0.44
TMEM39A-208ENST00000486159 GTF3C3Q9Y5Q9 886 aa12.28□□□□□ -0.44
TMEM39A-208ENST00000486159 LTBP3Q9NS15 1303 aa12.28□□□□□ -0.44
TMEM39A-208ENST00000486159 COL4A5P29400 1685 aa12.27□□□□□ -0.45
TMEM39A-208ENST00000486159 NEFMP07197 916 aa12.27□□□□□ -0.45
TMEM39A-208ENST00000486159 GTF2E1P29083 439 aaPredicted RBP12.27□□□□□ -0.45
TMEM39A-208ENST00000486159 TMPOP42166 694 aaKnown RBP12.27□□□□□ -0.45
TMEM39A-208ENST00000486159 HNRNPUQ00839 825 aaKnown RBP eCLIP12.27□□□□□ -0.45
TMEM39A-208ENST00000486159 CCDC93Q567U6 631 aa12.27□□□□□ -0.45
TMEM39A-208ENST00000486159 DPY19L2Q6NUT2 758 aa12.27□□□□□ -0.45
TMEM39A-208ENST00000486159 PNISRQ8TF01 805 aaKnown RBP12.27□□□□□ -0.45
TMEM39A-208ENST00000486159 MAPK8IP3Q9UPT6 1336 aa12.27□□□□□ -0.45
TMEM39A-208ENST00000486159 ERVV-1B6SEH8 477 aa12.26□□□□□ -0.45
TMEM39A-208ENST00000486159 CCDC184Q52MB2 194 aa12.26□□□□□ -0.45
TMEM39A-208ENST00000486159 ZNF34Q8IZ26 560 aa12.26□□□□□ -0.45
TMEM39A-208ENST00000486159 SYNE4Q8N205 404 aa12.26□□□□□ -0.45
TMEM39A-208ENST00000486159 JMYQ8N9B5 988 aa12.26□□□□□ -0.45
TMEM39A-208ENST00000486159 ZBED9Q6R2W3 1325 aa12.26□□□□□ -0.45
TMEM39A-208ENST00000486159 FKBP4Q02790 459 aaKnown RBP eCLIP12.25□□□□□ -0.45
TMEM39A-208ENST00000486159 KIF6Q6ZMV9 814 aa12.25□□□□□ -0.45
TMEM39A-208ENST00000486159 FAM9BQ8IZU0 186 aa12.25□□□□□ -0.45
TMEM39A-208ENST00000486159 SNED1Q8TER0 1413 aa12.25□□□□□ -0.45
TMEM39A-208ENST00000486159 NTSR2O95665 410 aa12.24□□□□□ -0.45
TMEM39A-208ENST00000486159 CRY2Q49AN0 593 aa12.24□□□□□ -0.45
TMEM39A-208ENST00000486159 TRIM35Q9UPQ4 493 aa12.24□□□□□ -0.45
TMEM39A-208ENST00000486159 PCNTO95613 3336 aa12.24□□□□□ -0.45
TMEM39A-208ENST00000486159 IARSP41252 1262 aaKnown RBP12.23□□□□□ -0.45
TMEM39A-208ENST00000486159 AIMP1Q12904 312 aaKnown RBP12.23□□□□□ -0.45
TMEM39A-208ENST00000486159 CHADLQ6NUI6 762 aa12.23□□□□□ -0.45
TMEM39A-208ENST00000486159 GIGYF2Q6Y7W6 1299 aaKnown RBP12.23□□□□□ -0.45
TMEM39A-208ENST00000486159 TAF1DQ9H5J8 278 aaPredicted RBP12.23□□□□□ -0.45
TMEM39A-208ENST00000486159 LAS1LQ9Y4W2 734 aaKnown RBP12.23□□□□□ -0.45
TMEM39A-208ENST00000486159 TAF1P21675 1872 aa12.23□□□□□ -0.45
TMEM39A-208ENST00000486159 RNF123Q5XPI4 1314 aa12.22□□□□□ -0.45
TMEM39A-208ENST00000486159 RGL2O15211 777 aa12.22□□□□□ -0.45
TMEM39A-208ENST00000486159 ALDH1B1P30837 517 aa12.22□□□□□ -0.45
TMEM39A-208ENST00000486159 SOGA3Q5TF21 947 aa12.22□□□□□ -0.45
TMEM39A-208ENST00000486159 COPS6Q7L5N1 327 aa12.22□□□□□ -0.45
TMEM39A-208ENST00000486159 XAGE3Q8WTP9 111 aa12.22□□□□□ -0.45
TMEM39A-208ENST00000486159 NYXQ9GZU5 481 aa12.22□□□□□ -0.45
TMEM39A-208ENST00000486159 ADAMTS8Q9UP79 889 aa12.22□□□□□ -0.45
TMEM39A-208ENST00000486159 LTBP1Q14766 1721 aa12.22□□□□□ -0.45
TMEM39A-208ENST00000486159 FZD9O00144 591 aa12.21□□□□□ -0.45
TMEM39A-208ENST00000486159 HOXA10P31260 410 aaPredicted RBP12.21□□□□□ -0.45
TMEM39A-208ENST00000486159 FMR1Q06787 632 aaKnown RBP eCLIP12.21□□□□□ -0.45
TMEM39A-208ENST00000486159 EAPPQ56P03 285 aaPredicted RBP12.21□□□□□ -0.45
TMEM39A-208ENST00000486159 RTKN2Q8IZC4 609 aa12.21□□□□□ -0.45
TMEM39A-208ENST00000486159 RPGRQ92834 1020 aaKnown RBP12.21□□□□□ -0.45
TMEM39A-208ENST00000486159 L3MBTL3Q96JM7 780 aaPredicted RBP12.21□□□□□ -0.45
TMEM39A-208ENST00000486159 PNNQ9H307 717 aaKnown RBP12.21□□□□□ -0.45
TMEM39A-208ENST00000486159 MKRN1Q9UHC7 482 aaKnown RBP12.21□□□□□ -0.45
TMEM39A-208ENST00000486159 SSUH2Q9Y2M2 353 aa12.21□□□□□ -0.45
TMEM39A-208ENST00000486159 LAMB2P55268 1798 aa12.2□□□□□ -0.46
TMEM39A-208ENST00000486159 CHL1O00533 1208 aa12.2□□□□□ -0.46
TMEM39A-208ENST00000486159 ITGBL1O95965 494 aaPredicted RBP12.2□□□□□ -0.46
TMEM39A-208ENST00000486159 HSPA1AP0DMV8 641 aaKnown RBP12.2□□□□□ -0.46
TMEM39A-208ENST00000486159 HSPA1BP0DMV9 641 aaKnown RBP12.2□□□□□ -0.46
TMEM39A-208ENST00000486159 HCLS1P14317 486 aaPredicted RBP12.2□□□□□ -0.46
TMEM39A-208ENST00000486159 SCN4AP35499 1836 aa12.19□□□□□ -0.46
TMEM39A-208ENST00000486159 PPEF1O14829 653 aaPredicted RBP12.19□□□□□ -0.46
TMEM39A-208ENST00000486159 EPHX2P34913 555 aa12.19□□□□□ -0.46
TMEM39A-208ENST00000486159 MAP1SQ66K74 1059 aaPredicted RBP12.19□□□□□ -0.46
TMEM39A-208ENST00000486159 NLRP10Q86W26 655 aa12.19□□□□□ -0.46
TMEM39A-208ENST00000486159 UTP14AQ9BVJ6 771 aaKnown RBP12.19□□□□□ -0.46
TMEM39A-208ENST00000486159 CHPF2Q9P2E5 772 aa12.19□□□□□ -0.46
TMEM39A-208ENST00000486159 GJA3Q9Y6H8 435 aa12.19□□□□□ -0.46
TMEM39A-208ENST00000486159 COL4A1P02462 1669 aa12.19□□□□□ -0.46
TMEM39A-208ENST00000486159 ADAMTSL1Q8N6G6 1762 aa12.18□□□□□ -0.46
TMEM39A-208ENST00000486159 ABCC4O15439 1325 aa12.18□□□□□ -0.46
TMEM39A-208ENST00000486159 ERBB4Q15303 1308 aa12.18□□□□□ -0.46
TMEM39A-208ENST00000486159 PASKQ96RG2 1323 aa12.18□□□□□ -0.46
TMEM39A-208ENST00000486159 SLC10A5Q5PT55 438 aa12.18□□□□□ -0.46
TMEM39A-208ENST00000486159 PPP1R42Q7Z4L9 355 aa12.18□□□□□ -0.46
TMEM39A-208ENST00000486159 LDHDQ86WU2 507 aa12.18□□□□□ -0.46
TMEM39A-208ENST00000486159 RUNDC1Q96C34 613 aa12.18□□□□□ -0.46
TMEM39A-208ENST00000486159 RBM17Q96I25 401 aaKnown RBP12.18□□□□□ -0.46
TMEM39A-208ENST00000486159 CRAMP1Q96RY5 1269 aa12.18□□□□□ -0.46
TMEM39A-208ENST00000486159 PSMD1Q99460 953 aa12.18□□□□□ -0.46
TMEM39A-208ENST00000486159 HACL1Q9UJ83 578 aa12.18□□□□□ -0.46
TMEM39A-208ENST00000486159 CLEC11AQ9Y240 323 aa12.18□□□□□ -0.46
TMEM39A-208ENST00000486159 RIC1Q4ADV7 1423 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms