RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CNBD1Q8NA66 436 aa10.31□□□□□ -0.76
USP40-216ENST00000485943 LARP6Q9BRS8 491 aaKnown RBP10.31□□□□□ -0.76
USP40-216ENST00000485943 TMX4Q9H1E5 349 aaPredicted RBP10.31□□□□□ -0.76
USP40-216ENST00000485943 ZBTB3Q9H5J0 574 aa10.31□□□□□ -0.76
USP40-216ENST00000485943 NIP7Q9Y221 180 aaKnown RBP eCLIP10.31□□□□□ -0.76
USP40-216ENST00000485943 CD2APQ9Y5K6 639 aa10.31□□□□□ -0.76
USP40-216ENST00000485943 CARMIL3Q8ND23 1372 aa10.3□□□□□ -0.76
USP40-216ENST00000485943 SERPINB2P05120 415 aa10.3□□□□□ -0.76
USP40-216ENST00000485943 PDE4AP27815 886 aa10.3□□□□□ -0.76
USP40-216ENST00000485943 TPTE2Q6XPS3 522 aa10.3□□□□□ -0.76
USP40-216ENST00000485943 RIC3Q7Z5B4 369 aa10.3□□□□□ -0.76
USP40-216ENST00000485943 AMIGO3Q86WK7 504 aa10.3□□□□□ -0.76
USP40-216ENST00000485943 TSR2Q969E8 191 aaKnown RBP10.3□□□□□ -0.76
USP40-216ENST00000485943 NYXQ9GZU5 481 aa10.3□□□□□ -0.76
USP40-216ENST00000485943 HYPKQ9NX55 129 aa10.3□□□□□ -0.76
USP40-216ENST00000485943 WWC3Q9ULE0 1092 aa10.3□□□□□ -0.76
USP40-216ENST00000485943 IL16Q14005 1332 aa10.3□□□□□ -0.76
USP40-216ENST00000485943 HNRNPUQ00839 825 aaKnown RBP eCLIP10.29□□□□□ -0.76
USP40-216ENST00000485943 NEXNQ0ZGT2 675 aa10.29□□□□□ -0.76
USP40-216ENST00000485943 TWISTNBQ3B726 338 aaPredicted RBP10.29□□□□□ -0.76
USP40-216ENST00000485943 CLEC4GQ6UXB4 293 aa10.29□□□□□ -0.76
USP40-216ENST00000485943 PPP1R42Q7Z4L9 355 aa10.29□□□□□ -0.76
USP40-216ENST00000485943 CHPF2Q9P2E5 772 aa10.29□□□□□ -0.76
USP40-216ENST00000485943 H0YIN7 160 aa10.28□□□□□ -0.76
USP40-216ENST00000485943 GRIN3BO60391 1043 aa10.28□□□□□ -0.76
USP40-216ENST00000485943 PDE6BP35913 854 aa10.28□□□□□ -0.76
USP40-216ENST00000485943 CLCN6P51797 869 aa10.28□□□□□ -0.76
USP40-216ENST00000485943 NFIXQ14938 502 aa10.28□□□□□ -0.76
USP40-216ENST00000485943 TBC1D9BQ66K14 1250 aa10.28□□□□□ -0.76
USP40-216ENST00000485943 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.28□□□□□ -0.76
USP40-216ENST00000485943 DDX21Q9NR30 783 aaKnown RBP eCLIP10.28□□□□□ -0.76
USP40-216ENST00000485943 MAP3K15Q6ZN16 1313 aa10.28□□□□□ -0.76
USP40-216ENST00000485943 ERVV-1B6SEH8 477 aa10.27□□□□□ -0.77
USP40-216ENST00000485943 E9PSI1 815 aa10.27□□□□□ -0.77
USP40-216ENST00000485943 ANXA1P04083 346 aa10.27□□□□□ -0.77
USP40-216ENST00000485943 GPTP24298 496 aa10.27□□□□□ -0.77
USP40-216ENST00000485943 ATN1P54259 1190 aaPredicted RBP10.27□□□□□ -0.77
USP40-216ENST00000485943 TGFB2P61812 414 aa10.27□□□□□ -0.77
USP40-216ENST00000485943 KRT24Q2M2I5 525 aa10.27□□□□□ -0.77
USP40-216ENST00000485943 COPS6Q7L5N1 327 aa10.27□□□□□ -0.77
USP40-216ENST00000485943 XAGE3Q8WTP9 111 aa10.27□□□□□ -0.77
USP40-216ENST00000485943 ZNF622Q969S3 477 aaKnown RBP eCLIP10.27□□□□□ -0.77
USP40-216ENST00000485943 DDX27Q96GQ7 796 aaKnown RBP10.27□□□□□ -0.77
USP40-216ENST00000485943 PDZRN3Q9UPQ7 1066 aa10.27□□□□□ -0.77
USP40-216ENST00000485943 BCS1LQ9Y276 419 aa10.27□□□□□ -0.77
USP40-216ENST00000485943 SCN7AQ01118 1682 aa10.26□□□□□ -0.77
USP40-216ENST00000485943 POLRMTO00411 1230 aaKnown RBP10.26□□□□□ -0.77
USP40-216ENST00000485943 CAMTA2O94983 1202 aa10.26□□□□□ -0.77
USP40-216ENST00000485943 HSP90B1P14625 803 aaKnown RBP10.26□□□□□ -0.77
USP40-216ENST00000485943 PARP10Q53GL7 1025 aa10.26□□□□□ -0.77
USP40-216ENST00000485943 DPY19L2Q6NUT2 758 aa10.26□□□□□ -0.77
USP40-216ENST00000485943 PDCD7Q8N8D1 485 aaKnown RBP10.26□□□□□ -0.77
USP40-216ENST00000485943 PIM2Q9P1W9 311 aa10.26□□□□□ -0.77
USP40-216ENST00000485943 FANCIQ9NVI1 1328 aa10.26□□□□□ -0.77
USP40-216ENST00000485943 NBPF26B4DH59 902 aa10.25□□□□□ -0.77
USP40-216ENST00000485943 FKBP5Q13451 457 aaPredicted RBP10.25□□□□□ -0.77
USP40-216ENST00000485943 CAMK2BQ13554 666 aa10.25□□□□□ -0.77
USP40-216ENST00000485943 DALRD3Q5D0E6 543 aaKnown RBP10.25□□□□□ -0.77
USP40-216ENST00000485943 NBPF10Q6P3W6 841 aaKnown RBP10.25□□□□□ -0.77
USP40-216ENST00000485943 TTLL7Q6ZT98 887 aa10.25□□□□□ -0.77
USP40-216ENST00000485943 ANKRD13DQ6ZTN6 518 aa10.25□□□□□ -0.77
USP40-216ENST00000485943 C2CD5Q86YS7 1000 aa10.25□□□□□ -0.77
USP40-216ENST00000485943 NBPF15Q8N660 670 aa10.25□□□□□ -0.77
USP40-216ENST00000485943 NLGN2Q8NFZ4 835 aa10.25□□□□□ -0.77
USP40-216ENST00000485943 RPGRQ92834 1020 aaKnown RBP10.25□□□□□ -0.77
USP40-216ENST00000485943 ARIH1Q9Y4X5 557 aaPredicted RBP10.25□□□□□ -0.77
USP40-216ENST00000485943 BCORQ6W2J9 1755 aa10.24□□□□□ -0.77
USP40-216ENST00000485943 NUP98P52948 1817 aa10.24□□□□□ -0.77
USP40-216ENST00000485943 A0A0G2JLW4 131 aa10.24□□□□□ -0.77
USP40-216ENST00000485943 TCERG1O14776 1098 aaKnown RBP10.24□□□□□ -0.77
USP40-216ENST00000485943 ATMINO43313 823 aaPredicted RBP10.24□□□□□ -0.77
USP40-216ENST00000485943 ZNF853P0CG23 659 aa10.24□□□□□ -0.77
USP40-216ENST00000485943 EXOSC9Q06265 439 aaKnown RBP10.24□□□□□ -0.77
USP40-216ENST00000485943 GIGYF2Q6Y7W6 1299 aaKnown RBP10.24□□□□□ -0.77
USP40-216ENST00000485943 C8orf58Q8NAV2 365 aa10.24□□□□□ -0.77
USP40-216ENST00000485943 PLBD2Q8NHP8 589 aa10.24□□□□□ -0.77
USP40-216ENST00000485943 UTP14AQ9BVJ6 771 aaKnown RBP10.24□□□□□ -0.77
USP40-216ENST00000485943 TESPA1A2RU30 521 aaPredicted RBP10.23□□□□□ -0.77
USP40-216ENST00000485943 SEMA3EO15041 775 aa10.23□□□□□ -0.77
USP40-216ENST00000485943 DPEP1P16444 411 aa10.23□□□□□ -0.77
USP40-216ENST00000485943 YY1P25490 414 aa10.23□□□□□ -0.77
USP40-216ENST00000485943 TM4SF1P30408 202 aa10.23□□□□□ -0.77
USP40-216ENST00000485943 DDR1Q08345 913 aa10.23□□□□□ -0.77
USP40-216ENST00000485943 HLFQ16534 295 aa10.23□□□□□ -0.77
USP40-216ENST00000485943 ASTLQ6HA08 431 aaPredicted RBP10.23□□□□□ -0.77
USP40-216ENST00000485943 ARHGAP27Q6ZUM4 889 aa10.23□□□□□ -0.77
USP40-216ENST00000485943 CCDC24Q8N4L8 307 aa10.23□□□□□ -0.77
USP40-216ENST00000485943 TRMT112Q9UI30 125 aaKnown RBP10.23□□□□□ -0.77
USP40-216ENST00000485943 AFDNP55196 1824 aaKnown RBP10.23□□□□□ -0.77
USP40-216ENST00000485943 CACNA1FO60840 1977 aa10.23□□□□□ -0.77
USP40-216ENST00000485943 N4BP2Q86UW6 1770 aaPredicted RBP10.22□□□□□ -0.77
USP40-216ENST00000485943 IRX5P78411 483 aaPredicted RBP10.22□□□□□ -0.77
USP40-216ENST00000485943 PROSER3Q2NL68 480 aa10.22□□□□□ -0.77
USP40-216ENST00000485943 TTLL6Q8N841 843 aa10.22□□□□□ -0.77
USP40-216ENST00000485943 CNKSR1Q969H4 720 aa10.22□□□□□ -0.77
USP40-216ENST00000485943 NLRP3Q96P20 1036 aa10.22□□□□□ -0.77
USP40-216ENST00000485943 MYD88Q99836 296 aa10.22□□□□□ -0.77
USP40-216ENST00000485943 BRIP1Q9BX63 1249 aa10.22□□□□□ -0.77
USP40-216ENST00000485943 C10orf71Q711Q0 1435 aa10.22□□□□□ -0.77
USP40-216ENST00000485943 COL24A1Q17RW2 1714 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms