RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 JDP2Q8WYK2 163 aa18.36■□□□□ 0.53
SQSTM1-208ENST00000485412 ABT1Q9ULW3 272 aaKnown RBP18.36■□□□□ 0.53
SQSTM1-208ENST00000485412 UBN2Q6ZU65 1347 aa18.35■□□□□ 0.53
SQSTM1-208ENST00000485412 RASSF10A6NK89 507 aa18.35■□□□□ 0.53
SQSTM1-208ENST00000485412 RRP7AQ9Y3A4 280 aaKnown RBP18.35■□□□□ 0.53
SQSTM1-208ENST00000485412 MYL6BP14649 208 aa18.34■□□□□ 0.53
SQSTM1-208ENST00000485412 EIF6P56537 245 aaKnown RBP18.34■□□□□ 0.53
SQSTM1-208ENST00000485412 NFE2L2Q16236 605 aa18.34■□□□□ 0.53
SQSTM1-208ENST00000485412 GJA3Q9Y6H8 435 aa18.34■□□□□ 0.53
SQSTM1-208ENST00000485412 MAP3K15Q6ZN16 1313 aa18.33■□□□□ 0.53
SQSTM1-208ENST00000485412 WDR33Q9C0J8 1336 aaKnown RBP18.33■□□□□ 0.53
SQSTM1-208ENST00000485412 LTBP1Q14766 1721 aa18.33■□□□□ 0.52
SQSTM1-208ENST00000485412 GPTP24298 496 aa18.33■□□□□ 0.52
SQSTM1-208ENST00000485412 LMOD1P29536 600 aaPredicted RBP18.33■□□□□ 0.52
SQSTM1-208ENST00000485412 MAP2K1Q02750 393 aaPredicted RBP18.33■□□□□ 0.52
SQSTM1-208ENST00000485412 PSMD1Q99460 953 aa18.33■□□□□ 0.52
SQSTM1-208ENST00000485412 NYXQ9GZU5 481 aa18.33■□□□□ 0.52
SQSTM1-208ENST00000485412 ZBTB3Q9H5J0 574 aa18.33■□□□□ 0.52
SQSTM1-208ENST00000485412 LAMB2P55268 1798 aa18.32■□□□□ 0.52
SQSTM1-208ENST00000485412 HSPA8P11142 646 aaKnown RBP18.32■□□□□ 0.52
SQSTM1-208ENST00000485412 RPGRQ92834 1020 aaKnown RBP18.32■□□□□ 0.52
SQSTM1-208ENST00000485412 ANKRD36CQ5JPF3 1778 aa18.32■□□□□ 0.52
SQSTM1-208ENST00000485412 TRPM7Q96QT4 1865 aa18.31■□□□□ 0.52
SQSTM1-208ENST00000485412 CRY2Q49AN0 593 aa18.31■□□□□ 0.52
SQSTM1-208ENST00000485412 CC2D2BQ6DHV5 1058 aa18.31■□□□□ 0.52
SQSTM1-208ENST00000485412 C3orf67Q6ZVT6 689 aa18.31■□□□□ 0.52
SQSTM1-208ENST00000485412 PAXIP1Q6ZW49 1069 aaPredicted RBP18.31■□□□□ 0.52
SQSTM1-208ENST00000485412 ERVV-1B6SEH8 477 aa18.3■□□□□ 0.52
SQSTM1-208ENST00000485412 SUSD4Q5VX71 490 aa18.3■□□□□ 0.52
SQSTM1-208ENST00000485412 DDX21Q9NR30 783 aaKnown RBP eCLIP18.3■□□□□ 0.52
SQSTM1-208ENST00000485412 TAF1P21675 1872 aa18.29■□□□□ 0.52
SQSTM1-208ENST00000485412 ANXA1P04083 346 aa18.29■□□□□ 0.52
SQSTM1-208ENST00000485412 PROSER3Q2NL68 480 aa18.29■□□□□ 0.52
SQSTM1-208ENST00000485412 KIF6Q6ZMV9 814 aa18.29■□□□□ 0.52
SQSTM1-208ENST00000485412 LRP10Q7Z4F1 713 aa18.29■□□□□ 0.52
SQSTM1-208ENST00000485412 LARGE2Q8N3Y3 721 aa18.29■□□□□ 0.52
SQSTM1-208ENST00000485412 PNISRQ8TF01 805 aaKnown RBP18.29■□□□□ 0.52
SQSTM1-208ENST00000485412 ABHD8Q96I13 439 aa18.29■□□□□ 0.52
SQSTM1-208ENST00000485412 NEFMP07197 916 aa18.28■□□□□ 0.52
SQSTM1-208ENST00000485412 GRM1Q13255 1194 aa18.28■□□□□ 0.52
SQSTM1-208ENST00000485412 BEGAINQ9BUH8 593 aa18.28■□□□□ 0.52
SQSTM1-208ENST00000485412 RIC1Q4ADV7 1423 aa18.28■□□□□ 0.52
SQSTM1-208ENST00000485412 THSD7BQ9C0I4 1608 aa18.27■□□□□ 0.52
SQSTM1-208ENST00000485412 MAPK8IP3Q9UPT6 1336 aa18.27■□□□□ 0.52
SQSTM1-208ENST00000485412 NTSR2O95665 410 aa18.27■□□□□ 0.52
SQSTM1-208ENST00000485412 ECE1P42892 770 aa18.27■□□□□ 0.52
SQSTM1-208ENST00000485412 PDIA6Q15084 440 aa18.27■□□□□ 0.52
SQSTM1-208ENST00000485412 GRIPAP1Q4V328 841 aa18.27■□□□□ 0.52
SQSTM1-208ENST00000485412 ZNF34Q8IZ26 560 aa18.27■□□□□ 0.52
SQSTM1-208ENST00000485412 CAPNS2Q96L46 248 aa18.27■□□□□ 0.52
SQSTM1-208ENST00000485412 IBTKQ9P2D0 1353 aaPredicted RBP18.27■□□□□ 0.51
SQSTM1-208ENST00000485412 TCERG1O14776 1098 aaKnown RBP18.26■□□□□ 0.51
SQSTM1-208ENST00000485412 EPS15P42566 896 aa18.26■□□□□ 0.51
SQSTM1-208ENST00000485412 NIM1KQ8IY84 436 aa18.26■□□□□ 0.51
SQSTM1-208ENST00000485412 RBM17Q96I25 401 aaKnown RBP18.26■□□□□ 0.51
SQSTM1-208ENST00000485412 TSPYL4Q9UJ04 414 aa18.26■□□□□ 0.51
SQSTM1-208ENST00000485412 PPEF1O14829 653 aaPredicted RBP18.25■□□□□ 0.51
SQSTM1-208ENST00000485412 EIF2S2P20042 333 aaKnown RBP18.25■□□□□ 0.51
SQSTM1-208ENST00000485412 HOXA10P31260 410 aaPredicted RBP18.25■□□□□ 0.51
SQSTM1-208ENST00000485412 SCNN1DP51172 638 aa18.25■□□□□ 0.51
SQSTM1-208ENST00000485412 USP50Q70EL3 339 aaPredicted RBP18.25■□□□□ 0.51
SQSTM1-208ENST00000485412 TMX4Q9H1E5 349 aaPredicted RBP18.25■□□□□ 0.51
SQSTM1-208ENST00000485412 FMR1Q06787 632 aaKnown RBP eCLIP18.24■□□□□ 0.512e-9■□□□□ 9.2
SQSTM1-208ENST00000485412 KRT24Q2M2I5 525 aa18.24■□□□□ 0.51
SQSTM1-208ENST00000485412 CYP4F22Q6NT55 531 aa18.24■□□□□ 0.51
SQSTM1-208ENST00000485412 GIGYF2Q6Y7W6 1299 aaKnown RBP18.24■□□□□ 0.51
SQSTM1-208ENST00000485412 NECTIN2Q92692 538 aa18.24■□□□□ 0.51
SQSTM1-208ENST00000485412 PPIP5K2O43314 1243 aa18.23■□□□□ 0.51
SQSTM1-208ENST00000485412 RIPK4P57078 832 aa18.23■□□□□ 0.51
SQSTM1-208ENST00000485412 FAM161AQ3B820 660 aa18.23■□□□□ 0.51
SQSTM1-208ENST00000485412 GPR101Q96P66 508 aaPredicted RBP18.23■□□□□ 0.51
SQSTM1-208ENST00000485412 CRAMP1Q96RY5 1269 aa18.23■□□□□ 0.51
SQSTM1-208ENST00000485412 TRAF5O00463 557 aa18.22■□□□□ 0.51
SQSTM1-208ENST00000485412 ZNF428Q96B54 188 aa18.22■□□□□ 0.51
SQSTM1-208ENST00000485412 ERBB4Q15303 1308 aa18.22■□□□□ 0.51
SQSTM1-208ENST00000485412 DDX60Q8IY21 1712 aaKnown RBP18.21■□□□□ 0.51
SQSTM1-208ENST00000485412 CCDC85CA6NKD9 419 aa18.21■□□□□ 0.51
SQSTM1-208ENST00000485412 TMPOP42166 694 aaKnown RBP18.21■□□□□ 0.51
SQSTM1-208ENST00000485412 PPP1R42Q7Z4L9 355 aa18.21■□□□□ 0.51
SQSTM1-208ENST00000485412 CCDC146Q8IYE0 955 aa18.21■□□□□ 0.51
SQSTM1-208ENST00000485412 TLL2Q9Y6L7 1015 aa18.21■□□□□ 0.51
SQSTM1-208ENST00000485412 COL4A1P02462 1669 aa18.21■□□□□ 0.51
SQSTM1-208ENST00000485412 AOC3Q16853 763 aa18.2■□□□□ 0.5
SQSTM1-208ENST00000485412 CST9Q5W186 159 aa18.2■□□□□ 0.5
SQSTM1-208ENST00000485412 NLRP3Q96P20 1036 aa18.2■□□□□ 0.5
SQSTM1-208ENST00000485412 ADARB2Q9NS39 739 aaKnown RBP18.2■□□□□ 0.5
SQSTM1-208ENST00000485412 GPRC5DQ9NZD1 345 aa18.19■□□□□ 0.5
SQSTM1-208ENST00000485412 ABCC4O15439 1325 aa18.19■□□□□ 0.5
SQSTM1-208ENST00000485412 AOC2O75106 756 aa18.18■□□□□ 0.5
SQSTM1-208ENST00000485412 AIMP1Q12904 312 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-208ENST00000485412 NEUROD2Q15784 382 aa18.18■□□□□ 0.5
SQSTM1-208ENST00000485412 PARP10Q53GL7 1025 aa18.18■□□□□ 0.5
SQSTM1-208ENST00000485412 SUPT20HQ8NEM7 779 aa18.18■□□□□ 0.5
SQSTM1-208ENST00000485412 XAGE3Q8WTP9 111 aa18.18■□□□□ 0.5
SQSTM1-208ENST00000485412 PNNQ9H307 717 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-208ENST00000485412 TSKSQ9UJT2 592 aa18.18■□□□□ 0.5
SQSTM1-208ENST00000485412 CELF2O95319 508 aaKnown RBP18.17■□□□□ 0.5
SQSTM1-208ENST00000485412 HCLS1P14317 486 aaPredicted RBP18.17■□□□□ 0.5
SQSTM1-208ENST00000485412 MAP2K2P36507 400 aa18.17■□□□□ 0.5
SQSTM1-208ENST00000485412 COPS6Q7L5N1 327 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms