RNA–Protein interactions for RNA: ENST00000483925.1

PTCD3-214, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-214ENST00000483925 TSPAN10Q9H1Z9 355 aaPredicted RBP6.97□□□□□ -1.29
PTCD3-214ENST00000483925 BRD7Q9NPI1 651 aa6.97□□□□□ -1.29
PTCD3-214ENST00000483925 PRDM6Q9NQX0 595 aa6.97□□□□□ -1.29
PTCD3-214ENST00000483925 KIAA1024Q9UPX6 916 aa6.97□□□□□ -1.29
PTCD3-214ENST00000483925 CDK11AQ9UQ88 783 aaPredicted RBP6.97□□□□□ -1.29
PTCD3-214ENST00000483925 HCN4Q9Y3Q4 1203 aa6.97□□□□□ -1.29
PTCD3-214ENST00000483925 PALM3A6NDB9 673 aaPredicted RBP6.96□□□□□ -1.3
PTCD3-214ENST00000483925 POM121CA8CG34 1229 aa6.96□□□□□ -1.3
PTCD3-214ENST00000483925 SFI1A8K8P3 1242 aa6.96□□□□□ -1.3
PTCD3-214ENST00000483925 M0R2N6 131 aa6.96□□□□□ -1.3
PTCD3-214ENST00000483925 APBA3O96018 575 aa6.96□□□□□ -1.3
PTCD3-214ENST00000483925 CLDN10P78369 228 aa6.96□□□□□ -1.3
PTCD3-214ENST00000483925 MICALL1Q8N3F8 863 aa6.96□□□□□ -1.3
PTCD3-214ENST00000483925 LARGE2Q8N3Y3 721 aa6.96□□□□□ -1.3
PTCD3-214ENST00000483925 ADAMTS19Q8TE59 1207 aa6.96□□□□□ -1.3
PTCD3-214ENST00000483925 GLMNQ92990 594 aa6.96□□□□□ -1.3
PTCD3-214ENST00000483925 PUS7Q96PZ0 661 aaKnown RBP6.96□□□□□ -1.3
PTCD3-214ENST00000483925 PHACTR1Q9C0D0 580 aa6.96□□□□□ -1.3
PTCD3-214ENST00000483925 STARD13Q9Y3M8 1113 aa6.96□□□□□ -1.3
PTCD3-214ENST00000483925 ATP9BO43861 1147 aa6.95□□□□□ -1.3
PTCD3-214ENST00000483925 ITGB7P26010 798 aa6.95□□□□□ -1.3
PTCD3-214ENST00000483925 ADH7P40394 386 aa6.95□□□□□ -1.3
PTCD3-214ENST00000483925 KCNQ4P56696 695 aa6.95□□□□□ -1.3
PTCD3-214ENST00000483925 TRIM28Q13263 835 aaKnown RBP6.95□□□□□ -1.3
PTCD3-214ENST00000483925 COL9A3Q14050 684 aaPredicted RBP6.95□□□□□ -1.3
PTCD3-214ENST00000483925 POTEAQ6S8J7 498 aa6.95□□□□□ -1.3
PTCD3-214ENST00000483925 OGFOD1Q8N543 542 aa6.95□□□□□ -1.3
PTCD3-214ENST00000483925 HSH2DQ96JZ2 352 aa6.95□□□□□ -1.3
PTCD3-214ENST00000483925 USP35Q9P2H5 1018 aa6.95□□□□□ -1.3
PTCD3-214ENST00000483925 MKRN1Q9UHC7 482 aaKnown RBP6.95□□□□□ -1.3
PTCD3-214ENST00000483925 KCNH4Q9UQ05 1017 aa6.95□□□□□ -1.3
PTCD3-214ENST00000483925 RBM19Q9Y4C8 960 aaKnown RBP6.95□□□□□ -1.3
PTCD3-214ENST00000483925 ALBP02768 609 aa6.94□□□□□ -1.3
PTCD3-214ENST00000483925 SUSD3Q96L08 255 aa6.94□□□□□ -1.3
PTCD3-214ENST00000483925 NACC1Q96RE7 527 aa6.94□□□□□ -1.3
PTCD3-214ENST00000483925 UCN2Q96RP3 112 aa6.94□□□□□ -1.3
PTCD3-214ENST00000483925 PPP1R12BO60237 982 aaPredicted RBP6.93□□□□□ -1.3
PTCD3-214ENST00000483925 SND1Q7KZF4 910 aaKnown RBP eCLIP6.93□□□□□ -1.3
PTCD3-214ENST00000483925 RAB44Q7Z6P3 723 aaPredicted RBP6.93□□□□□ -1.3
PTCD3-214ENST00000483925 TSEN2Q8NCE0 465 aaKnown RBP6.93□□□□□ -1.3
PTCD3-214ENST00000483925 ZNF280CQ8ND82 737 aa6.93□□□□□ -1.3
PTCD3-214ENST00000483925 FAM229AH3BQW9 127 aa6.92□□□□□ -1.3
PTCD3-214ENST00000483925 NID1P14543 1247 aa6.92□□□□□ -1.3
PTCD3-214ENST00000483925 TYRO3Q06418 890 aa6.92□□□□□ -1.3
PTCD3-214ENST00000483925 RSPO4Q2I0M5 234 aaPredicted RBP6.92□□□□□ -1.3
PTCD3-214ENST00000483925 C20orf204Q6ZNR8 217 aa6.92□□□□□ -1.3
PTCD3-214ENST00000483925 C8orf86Q6ZUL3 223 aa6.92□□□□□ -1.3
PTCD3-214ENST00000483925 SIX5Q8N196 739 aa6.92□□□□□ -1.3
PTCD3-214ENST00000483925 LILRB5O75023 590 aa6.91□□□□□ -1.3
PTCD3-214ENST00000483925 HIF1AQ16665 826 aa6.91□□□□□ -1.3
PTCD3-214ENST00000483925 NKAPLQ5M9Q1 402 aa6.91□□□□□ -1.3
PTCD3-214ENST00000483925 ZMYM1Q5SVZ6 1142 aa6.91□□□□□ -1.3
PTCD3-214ENST00000483925 TRAPPC3LQ5T215 181 aa6.91□□□□□ -1.3
PTCD3-214ENST00000483925 ALDH16A1Q8IZ83 802 aa6.91□□□□□ -1.3
PTCD3-214ENST00000483925 STAG2Q8N3U4 1231 aa6.91□□□□□ -1.3
PTCD3-214ENST00000483925 GAS2L2Q8NHY3 880 aa6.91□□□□□ -1.3
PTCD3-214ENST00000483925 BHMTQ93088 406 aa6.91□□□□□ -1.3
PTCD3-214ENST00000483925 ZNF594Q96JF6 807 aaPredicted RBP6.91□□□□□ -1.3
PTCD3-214ENST00000483925 TPSG1Q9NRR2 321 aa6.91□□□□□ -1.3
PTCD3-214ENST00000483925 IVNS1ABPQ9Y6Y0 642 aa6.91□□□□□ -1.3
PTCD3-214ENST00000483925 ATAD2Q6PL18 1390 aa6.91□□□□□ -1.3
PTCD3-214ENST00000483925 C21orf2O43822 256 aa6.9□□□□□ -1.3
PTCD3-214ENST00000483925 GRIK4Q16099 956 aa6.9□□□□□ -1.3
PTCD3-214ENST00000483925 C2orf49Q9BVC5 232 aaPredicted RBP6.9□□□□□ -1.3
PTCD3-214ENST00000483925 EFCC1Q9HA90 598 aa6.9□□□□□ -1.3
PTCD3-214ENST00000483925 DKK1O94907 266 aa6.89□□□□□ -1.31
PTCD3-214ENST00000483925 BTLAQ7Z6A9 289 aa6.89□□□□□ -1.31
PTCD3-214ENST00000483925 SCG3Q8WXD2 468 aaKnown RBP6.89□□□□□ -1.31
PTCD3-214ENST00000483925 UBE2OQ9C0C9 1292 aaKnown RBP6.89□□□□□ -1.31
PTCD3-214ENST00000483925 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.88□□□□□ -1.31
PTCD3-214ENST00000483925 C9orf172C9J069 976 aa6.88□□□□□ -1.31
PTCD3-214ENST00000483925 RASA1P20936 1047 aa6.88□□□□□ -1.31
PTCD3-214ENST00000483925 RFX1P22670 979 aa6.88□□□□□ -1.31
PTCD3-214ENST00000483925 SEC13P55735 322 aa6.88□□□□□ -1.31
PTCD3-214ENST00000483925 TBC1D8BQ0IIM8 1120 aa6.88□□□□□ -1.31
PTCD3-214ENST00000483925 CHMP7Q8WUX9 453 aaPredicted RBP6.88□□□□□ -1.31
PTCD3-214ENST00000483925 IGFLR1Q9H665 355 aa6.88□□□□□ -1.31
PTCD3-214ENST00000483925 VRTNQ9H8Y1 702 aa6.88□□□□□ -1.31
PTCD3-214ENST00000483925 DYRK3O43781 588 aa6.87□□□□□ -1.31
PTCD3-214ENST00000483925 NGLY1Q96IV0 654 aa6.87□□□□□ -1.31
PTCD3-214ENST00000483925 TFIP11Q9UBB9 837 aaKnown RBP6.87□□□□□ -1.31
PTCD3-214ENST00000483925 SLC6A14Q9UN76 642 aa6.87□□□□□ -1.31
PTCD3-214ENST00000483925 ELNP15502 786 aa6.86□□□□□ -1.31
PTCD3-214ENST00000483925 SRPK2P78362 688 aaKnown RBP6.86□□□□□ -1.31
PTCD3-214ENST00000483925 IER5Q5VY09 327 aa6.86□□□□□ -1.31
PTCD3-214ENST00000483925 B4GALNT3Q6L9W6 998 aa6.86□□□□□ -1.31
PTCD3-214ENST00000483925 PNMA5Q96PV4 448 aa6.86□□□□□ -1.31
PTCD3-214ENST00000483925 HINFPQ9BQA5 517 aa6.86□□□□□ -1.31
PTCD3-214ENST00000483925 GSX2Q9BZM3 304 aa6.86□□□□□ -1.31
PTCD3-214ENST00000483925 JPH1Q9HDC5 661 aaPredicted RBP6.86□□□□□ -1.31
PTCD3-214ENST00000483925 A0A0A0MRY4 1105 aa6.85□□□□□ -1.31
PTCD3-214ENST00000483925 RAC1P63000 192 aa6.85□□□□□ -1.31
PTCD3-214ENST00000483925 RTN1Q16799 776 aa6.85□□□□□ -1.31
PTCD3-214ENST00000483925 CFAP70Q5T0N1 1121 aa6.85□□□□□ -1.31
PTCD3-214ENST00000483925 LARP1Q6PKG0 1096 aaKnown RBP6.85□□□□□ -1.31
PTCD3-214ENST00000483925 NUDT8Q8WV74 236 aa6.85□□□□□ -1.31
PTCD3-214ENST00000483925 DNAJB12Q9NXW2 375 aaKnown RBP6.85□□□□□ -1.31
PTCD3-214ENST00000483925 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.85□□□□□ -1.31
PTCD3-214ENST00000483925 TTBK1Q5TCY1 1321 aaPredicted RBP6.84□□□□□ -1.31
PTCD3-214ENST00000483925 SCO2A0A1W2PP80 73 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms