RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 TMX3Q96JJ7 454 aa13.37□□□□□ -0.27
HLA-DMB-260ENST00000477537 LSG1Q9H089 658 aaKnown RBP13.37□□□□□ -0.27
HLA-DMB-260ENST00000477537 A0A087WZG4 1122 aa13.36□□□□□ -0.27
HLA-DMB-260ENST00000477537 KIAA1211Q6ZU35 1233 aa13.36□□□□□ -0.27
HLA-DMB-260ENST00000477537 RUFY2Q8WXA3 655 aa13.36□□□□□ -0.27
HLA-DMB-260ENST00000477537 SPATA31A6Q5VVP1 1343 aa13.36□□□□□ -0.27
HLA-DMB-260ENST00000477537 A1BGP04217 495 aa13.35□□□□□ -0.27
HLA-DMB-260ENST00000477537 CLEC17AQ6ZS10 378 aa13.35□□□□□ -0.27
HLA-DMB-260ENST00000477537 NOL8Q76FK4 1167 aaKnown RBP13.35□□□□□ -0.27
HLA-DMB-260ENST00000477537 EVI5LQ96CN4 794 aa13.35□□□□□ -0.27
HLA-DMB-260ENST00000477537 UPF3BQ9BZI7 483 aaKnown RBP13.35□□□□□ -0.27
HLA-DMB-260ENST00000477537 TLR7Q9NYK1 1049 aaKnown RBP13.35□□□□□ -0.27
HLA-DMB-260ENST00000477537 BRPF3Q9ULD4 1205 aa13.35□□□□□ -0.27
HLA-DMB-260ENST00000477537 BAG4O95429 457 aaKnown RBP13.35□□□□□ -0.27
HLA-DMB-260ENST00000477537 CYP2E1P05181 493 aaPredicted RBP13.35□□□□□ -0.27
HLA-DMB-260ENST00000477537 RFX5P48382 616 aaPredicted RBP13.35□□□□□ -0.27
HLA-DMB-260ENST00000477537 TTLL7Q6ZT98 887 aa13.35□□□□□ -0.27
HLA-DMB-260ENST00000477537 COPRSQ9NQ92 184 aa13.35□□□□□ -0.27
HLA-DMB-260ENST00000477537 COL15A1P39059 1388 aa13.35□□□□□ -0.27
HLA-DMB-260ENST00000477537 NUP188Q5SRE5 1749 aa13.35□□□□□ -0.27
HLA-DMB-260ENST00000477537 GOLGA6L22H0YM25 854 aa13.34□□□□□ -0.27
HLA-DMB-260ENST00000477537 PKP1Q13835 747 aa13.34□□□□□ -0.27
HLA-DMB-260ENST00000477537 SKOR2Q2VWA4 1001 aaPredicted RBP13.34□□□□□ -0.27
HLA-DMB-260ENST00000477537 RABL6Q3YEC7 729 aaPredicted RBP13.34□□□□□ -0.27
HLA-DMB-260ENST00000477537 L1TD1Q5T7N2 865 aaKnown RBP13.34□□□□□ -0.27
HLA-DMB-260ENST00000477537 MEX3CQ5U5Q3 659 aaKnown RBP13.34□□□□□ -0.27
HLA-DMB-260ENST00000477537 NGLY1Q96IV0 654 aa13.34□□□□□ -0.27
HLA-DMB-260ENST00000477537 SNX14Q9Y5W7 946 aa13.34□□□□□ -0.27
HLA-DMB-260ENST00000477537 TOGARAM1Q9Y4F4 1720 aa13.34□□□□□ -0.27
HLA-DMB-260ENST00000477537 TNS2Q63HR2 1409 aa13.33□□□□□ -0.27
HLA-DMB-260ENST00000477537 CASP7P55210 303 aa13.33□□□□□ -0.28
HLA-DMB-260ENST00000477537 PTPN12Q05209 780 aaKnown RBP13.33□□□□□ -0.28
HLA-DMB-260ENST00000477537 CUL4AQ13619 759 aa13.33□□□□□ -0.28
HLA-DMB-260ENST00000477537 BOLA2Q9H3K6 86 aa13.33□□□□□ -0.28
HLA-DMB-260ENST00000477537 TMOD3Q9NYL9 352 aa13.33□□□□□ -0.28
HLA-DMB-260ENST00000477537 NRAPQ86VF7 1730 aa13.33□□□□□ -0.28
HLA-DMB-260ENST00000477537 GOLGA6L3A6NEY3 463 aa13.32□□□□□ -0.28
HLA-DMB-260ENST00000477537 RASEFQ8IZ41 740 aa13.32□□□□□ -0.28
HLA-DMB-260ENST00000477537 CWC25Q9NXE8 425 aaPredicted RBP13.32□□□□□ -0.28
HLA-DMB-260ENST00000477537 H7C1W4 665 aa13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 PTH1RQ03431 593 aa13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 TFCP2Q12800 502 aa13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 ARXQ96QS3 562 aa13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 ZBTB3Q9H5J0 574 aa13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 ZDHHC9Q9Y397 364 aa13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 TJP1Q07157 1748 aa13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 SLIT2O94813 1529 aa13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 FSD2A1L4K1 749 aa13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 HIP1O00291 1037 aa13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 NMIQ13287 307 aaPredicted RBP13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 TNNI3KQ59H18 835 aa13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 LMBR1LQ6UX01 489 aa13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 IL27Q8NEV9 243 aa13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 FSD1Q9BTV5 496 aa13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 CHMP3Q9Y3E7 222 aa13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 FPGT-TNNI3KV9GXZ4 949 aa13.31□□□□□ -0.28
HLA-DMB-260ENST00000477537 FOXO4P98177 505 aa13.3□□□□□ -0.28
HLA-DMB-260ENST00000477537 MCTP1Q6DN14 999 aa13.3□□□□□ -0.28
HLA-DMB-260ENST00000477537 INTS4Q96HW7 963 aaKnown RBP13.3□□□□□ -0.28
HLA-DMB-260ENST00000477537 FAM227BQ96M60 508 aa13.3□□□□□ -0.28
HLA-DMB-260ENST00000477537 NWD2Q9ULI1 1742 aa13.3□□□□□ -0.28
HLA-DMB-260ENST00000477537 BCL9LQ86UU0 1499 aa13.29□□□□□ -0.28
HLA-DMB-260ENST00000477537 DBNLQ9UJU6 430 aaKnown RBP13.29□□□□□ -0.28
HLA-DMB-260ENST00000477537 CCDC171Q6TFL3 1326 aa13.29□□□□□ -0.28
HLA-DMB-260ENST00000477537 PRPF40BQ6NWY9 871 aaKnown RBP13.29□□□□□ -0.28
HLA-DMB-260ENST00000477537 AFF2P51816 1311 aa13.28□□□□□ -0.28
HLA-DMB-260ENST00000477537 ITGB4P16144 1822 aa13.28□□□□□ -0.28
HLA-DMB-260ENST00000477537 EP400Q96L91 3159 aa13.28□□□□□ -0.28
HLA-DMB-260ENST00000477537 FOXD4L5Q5VV16 416 aaPredicted RBP13.28□□□□□ -0.28
HLA-DMB-260ENST00000477537 CCDC191Q8NCU4 936 aa13.28□□□□□ -0.28
HLA-DMB-260ENST00000477537 FOXD4L4Q8WXT5 416 aaPredicted RBP13.28□□□□□ -0.28
HLA-DMB-260ENST00000477537 PIGBQ92521 554 aa13.28□□□□□ -0.28
HLA-DMB-260ENST00000477537 TTC14Q96N46 770 aa13.28□□□□□ -0.28
HLA-DMB-260ENST00000477537 USP21Q9UK80 565 aa13.28□□□□□ -0.28
HLA-DMB-260ENST00000477537 ASAP1Q9ULH1 1129 aa13.28□□□□□ -0.28
HLA-DMB-260ENST00000477537 ZNF330Q9Y3S2 320 aaPredicted RBP13.28□□□□□ -0.28
HLA-DMB-260ENST00000477537 CCDC9Q9Y3X0 531 aaKnown RBP13.28□□□□□ -0.28
HLA-DMB-260ENST00000477537 A0A0D9SFI3 127 aa13.27□□□□□ -0.28
HLA-DMB-260ENST00000477537 ATP5JP18859 108 aa13.27□□□□□ -0.28
HLA-DMB-260ENST00000477537 CASTP20810 708 aaKnown RBP13.27□□□□□ -0.28
HLA-DMB-260ENST00000477537 ILDR1Q86SU0 546 aaPredicted RBP13.27□□□□□ -0.28
HLA-DMB-260ENST00000477537 FNBP4Q8N3X1 1017 aaPredicted RBP13.27□□□□□ -0.28
HLA-DMB-260ENST00000477537 DDX49Q9Y6V7 483 aaKnown RBP13.27□□□□□ -0.28
HLA-DMB-260ENST00000477537 KCNJ4P48050 445 aa13.27□□□□□ -0.29
HLA-DMB-260ENST00000477537 AK2P54819 239 aa13.27□□□□□ -0.29
HLA-DMB-260ENST00000477537 DNAJC10Q8IXB1 793 aa13.27□□□□□ -0.29
HLA-DMB-260ENST00000477537 KCNB2Q92953 911 aa13.27□□□□□ -0.29
HLA-DMB-260ENST00000477537 EDC3Q96F86 508 aaKnown RBP13.27□□□□□ -0.29
HLA-DMB-260ENST00000477537 JAKMIP1Q96N16 626 aaKnown RBP13.27□□□□□ -0.29
HLA-DMB-260ENST00000477537 DBNDD2Q9BQY9 259 aa13.27□□□□□ -0.29
HLA-DMB-260ENST00000477537 RBM8AQ9Y5S9 174 aaKnown RBP13.27□□□□□ -0.29
HLA-DMB-260ENST00000477537 BRD1O95696 1058 aa13.26□□□□□ -0.29
HLA-DMB-260ENST00000477537 XRCC6P12956 609 aaKnown RBP eCLIP13.26□□□□□ -0.29
HLA-DMB-260ENST00000477537 CPA1P15085 419 aa13.26□□□□□ -0.29
HLA-DMB-260ENST00000477537 NECTIN1Q15223 517 aa13.26□□□□□ -0.29
HLA-DMB-260ENST00000477537 SNRKQ9NRH2 765 aa13.26□□□□□ -0.29
HLA-DMB-260ENST00000477537 ATG3Q9NT62 314 aa13.26□□□□□ -0.29
HLA-DMB-260ENST00000477537 LMBRD1Q9NUN5 540 aa13.26□□□□□ -0.29
HLA-DMB-260ENST00000477537 KAT6BQ8WYB5 2073 aa13.26□□□□□ -0.29
HLA-DMB-260ENST00000477537 KLHL40Q2TBA0 621 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms