RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-212ENST00000477520 CUX1P39880 1505 aa6.66□□□□□ -1.34
PTCD3-212ENST00000477520 TOP2BQ02880 1626 aa6.65□□□□□ -1.34
PTCD3-212ENST00000477520 A0A0A0MRY4 1105 aa6.65□□□□□ -1.34
PTCD3-212ENST00000477520 SPEM2Q0P670 501 aa6.65□□□□□ -1.34
PTCD3-212ENST00000477520 SH3PXD2AQ5TCZ1 1133 aa6.65□□□□□ -1.34
PTCD3-212ENST00000477520 TXNRD3Q86VQ6 643 aa6.65□□□□□ -1.34
PTCD3-212ENST00000477520 FANCIQ9NVI1 1328 aa6.65□□□□□ -1.35
PTCD3-212ENST00000477520 PIK3CDO00329 1044 aa6.64□□□□□ -1.35
PTCD3-212ENST00000477520 NOS2P35228 1153 aa6.64□□□□□ -1.35
PTCD3-212ENST00000477520 TEAD4Q15561 434 aa6.64□□□□□ -1.35
PTCD3-212ENST00000477520 TBCELQ5QJ74 424 aa6.64□□□□□ -1.35
PTCD3-212ENST00000477520 GOLGA2P5Q9HBQ8 144 aa6.64□□□□□ -1.35
PTCD3-212ENST00000477520 BIVM-ERCC5R4GMW8 1640 aa6.64□□□□□ -1.35
PTCD3-212ENST00000477520 ELNP15502 786 aa6.63□□□□□ -1.35
PTCD3-212ENST00000477520 EPHA4P54764 986 aa6.63□□□□□ -1.35
PTCD3-212ENST00000477520 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.63□□□□□ -1.35
PTCD3-212ENST00000477520 TP53INP1Q96A56 240 aa6.63□□□□□ -1.35
PTCD3-212ENST00000477520 LENG1Q96BZ8 264 aaPredicted RBP6.63□□□□□ -1.35
PTCD3-212ENST00000477520 SSBP4Q9BWG4 385 aaPredicted RBP6.63□□□□□ -1.35
PTCD3-212ENST00000477520 ZNF358Q9NW07 568 aa6.63□□□□□ -1.35
PTCD3-212ENST00000477520 SYNJ1O43426 1573 aa6.62□□□□□ -1.35
PTCD3-212ENST00000477520 FGD5Q6ZNL6 1462 aa6.62□□□□□ -1.35
PTCD3-212ENST00000477520 IFT140Q96RY7 1462 aa6.62□□□□□ -1.35
PTCD3-212ENST00000477520 SOGA1O94964 1423 aa6.62□□□□□ -1.35
PTCD3-212ENST00000477520 LILRB5O75023 590 aa6.62□□□□□ -1.35
PTCD3-212ENST00000477520 SLC9A9Q8IVB4 645 aa6.62□□□□□ -1.35
PTCD3-212ENST00000477520 POLA1P09884 1462 aaPredicted RBP6.61□□□□□ -1.35
PTCD3-212ENST00000477520 BACH1O14867 736 aa6.61□□□□□ -1.35
PTCD3-212ENST00000477520 NRG1Q02297 640 aaPredicted RBP6.61□□□□□ -1.35
PTCD3-212ENST00000477520 HSH2DQ96JZ2 352 aa6.61□□□□□ -1.35
PTCD3-212ENST00000477520 NEUROD4Q9HD90 331 aa6.61□□□□□ -1.35
PTCD3-212ENST00000477520 ZNF232Q9UNY5 417 aa6.61□□□□□ -1.35
PTCD3-212ENST00000477520 GTF2IP78347 998 aa6.6□□□□□ -1.35
PTCD3-212ENST00000477520 ILDR2Q71H61 639 aa6.6□□□□□ -1.35
PTCD3-212ENST00000477520 TNS4Q8IZW8 715 aa6.6□□□□□ -1.35
PTCD3-212ENST00000477520 GDPD2Q9HCC8 539 aa6.6□□□□□ -1.35
PTCD3-212ENST00000477520 BRD7Q9NPI1 651 aa6.6□□□□□ -1.35
PTCD3-212ENST00000477520 GPC6Q9Y625 555 aaPredicted RBP6.6□□□□□ -1.35
PTCD3-212ENST00000477520 KCNQ4P56696 695 aa6.59□□□□□ -1.35
PTCD3-212ENST00000477520 ZNF280CQ8ND82 737 aa6.59□□□□□ -1.35
PTCD3-212ENST00000477520 RHPN1Q8TCX5 695 aa6.59□□□□□ -1.35
PTCD3-212ENST00000477520 NUDT8Q8WV74 236 aa6.59□□□□□ -1.35
PTCD3-212ENST00000477520 BHMTQ93088 406 aa6.59□□□□□ -1.35
PTCD3-212ENST00000477520 CEP63Q96MT8 703 aa6.59□□□□□ -1.35
PTCD3-212ENST00000477520 JPH1Q9HDC5 661 aaPredicted RBP6.59□□□□□ -1.35
PTCD3-212ENST00000477520 SERTM1A2A2V5 107 aa6.58□□□□□ -1.36
PTCD3-212ENST00000477520 SFI1A8K8P3 1242 aa6.58□□□□□ -1.36
PTCD3-212ENST00000477520 ABL2P42684 1182 aa6.58□□□□□ -1.36
PTCD3-212ENST00000477520 AFF1P51825 1210 aaKnown RBP6.58□□□□□ -1.36
PTCD3-212ENST00000477520 RAC1P63000 192 aa6.58□□□□□ -1.36
PTCD3-212ENST00000477520 TYRO3Q06418 890 aa6.58□□□□□ -1.36
PTCD3-212ENST00000477520 TBC1D8BQ0IIM8 1120 aa6.58□□□□□ -1.36
PTCD3-212ENST00000477520 SEMA3FQ13275 785 aa6.58□□□□□ -1.36
PTCD3-212ENST00000477520 MCTP1Q6DN14 999 aa6.58□□□□□ -1.36
PTCD3-212ENST00000477520 SLC6A14Q9UN76 642 aa6.58□□□□□ -1.36
PTCD3-212ENST00000477520 KCNH4Q9UQ05 1017 aa6.58□□□□□ -1.36
PTCD3-212ENST00000477520 ABCA10Q8WWZ4 1543 aa6.58□□□□□ -1.36
PTCD3-212ENST00000477520 RAD54L2Q9Y4B4 1467 aa6.58□□□□□ -1.36
PTCD3-212ENST00000477520 WDR97A6NE52 1622 aa6.58□□□□□ -1.36
PTCD3-212ENST00000477520 TARBP1Q13395 1621 aaKnown RBP6.58□□□□□ -1.36
PTCD3-212ENST00000477520 EIF5BO60841 1220 aaKnown RBP6.57□□□□□ -1.36
PTCD3-212ENST00000477520 BRPF1P55201 1214 aaPredicted RBP6.57□□□□□ -1.36
PTCD3-212ENST00000477520 EML3Q32P44 896 aa6.57□□□□□ -1.36
PTCD3-212ENST00000477520 DMRTC2Q8IXT2 367 aaPredicted RBP6.57□□□□□ -1.36
PTCD3-212ENST00000477520 FMR1NBQ8N0W7 255 aaPredicted RBP6.57□□□□□ -1.36
PTCD3-212ENST00000477520 YTHDC1Q96MU7 727 aaKnown RBP6.57□□□□□ -1.36
PTCD3-212ENST00000477520 PRM3Q9NNZ6 103 aa6.57□□□□□ -1.36
PTCD3-212ENST00000477520 NAGPAQ9UK23 515 aa6.57□□□□□ -1.36
PTCD3-212ENST00000477520 USP21Q9UK80 565 aa6.57□□□□□ -1.36
PTCD3-212ENST00000477520 NOD1Q9Y239 953 aa6.57□□□□□ -1.36
PTCD3-212ENST00000477520 RBM19Q9Y4C8 960 aaKnown RBP6.57□□□□□ -1.36
PTCD3-212ENST00000477520 KIF27Q86VH2 1401 aa6.57□□□□□ -1.36
PTCD3-212ENST00000477520 PSME1Q06323 249 aa6.56□□□□□ -1.36
PTCD3-212ENST00000477520 UBE2OQ9C0C9 1292 aaKnown RBP6.56□□□□□ -1.36
PTCD3-212ENST00000477520 IGFLR1Q9H665 355 aa6.56□□□□□ -1.36
PTCD3-212ENST00000477520 RNF112Q9ULX5 631 aa6.56□□□□□ -1.36
PTCD3-212ENST00000477520 HCN4Q9Y3Q4 1203 aa6.56□□□□□ -1.36
PTCD3-212ENST00000477520 NEFLP07196 543 aa6.55□□□□□ -1.36
PTCD3-212ENST00000477520 PHACTR1Q9C0D0 580 aa6.55□□□□□ -1.36
PTCD3-212ENST00000477520 TDRD9Q8NDG6 1382 aaKnown RBP6.55□□□□□ -1.36
PTCD3-212ENST00000477520 GAPVD1Q14C86 1478 aa6.54□□□□□ -1.36
PTCD3-212ENST00000477520 EEA1Q15075 1411 aa6.54□□□□□ -1.36
PTCD3-212ENST00000477520 SKIP12755 728 aa6.54□□□□□ -1.36
PTCD3-212ENST00000477520 NCOA4Q13772 614 aa6.54□□□□□ -1.36
PTCD3-212ENST00000477520 WASHC4Q2M389 1173 aa6.54□□□□□ -1.36
PTCD3-212ENST00000477520 C1orf53Q5VUE5 145 aa6.54□□□□□ -1.36
PTCD3-212ENST00000477520 PSAPL1Q6NUJ1 521 aa6.54□□□□□ -1.36
PTCD3-212ENST00000477520 WFDC12Q8WWY7 111 aa6.54□□□□□ -1.36
PTCD3-212ENST00000477520 SUSD3Q96L08 255 aa6.54□□□□□ -1.36
PTCD3-212ENST00000477520 TSPAN10Q9H1Z9 355 aaPredicted RBP6.54□□□□□ -1.36
PTCD3-212ENST00000477520 ARID1BQ8NFD5 2236 aaPredicted RBP6.54□□□□□ -1.36
PTCD3-212ENST00000477520 GRIN2BQ13224 1484 aa6.53□□□□□ -1.36
PTCD3-212ENST00000477520 NOS3P29474 1203 aa6.53□□□□□ -1.36
PTCD3-212ENST00000477520 IREB2P48200 963 aaKnown RBP6.53□□□□□ -1.36
PTCD3-212ENST00000477520 POTEAQ6S8J7 498 aa6.53□□□□□ -1.36
PTCD3-212ENST00000477520 DEPDC4Q8N2C3 294 aa6.53□□□□□ -1.36
PTCD3-212ENST00000477520 DNAJB12Q9NXW2 375 aaKnown RBP6.53□□□□□ -1.36
PTCD3-212ENST00000477520 ANKIB1Q9P2G1 1089 aa6.53□□□□□ -1.36
PTCD3-212ENST00000477520 ZNF608Q9ULD9 1512 aaPredicted RBP6.53□□□□□ -1.36
PTCD3-212ENST00000477520 AQRO60306 1485 aaKnown RBP eCLIP6.53□□□□□ -1.361e-8■■■■■ 29.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms