RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 GLI3P10071 1580 aa10.04□□□□□ -0.8
VAPB-205ENST00000476395 MRC1P22897 1456 aa10.04□□□□□ -0.8
VAPB-205ENST00000476395 EIF4A1P60842 406 aaKnown RBP10.04□□□□□ -0.8
VAPB-205ENST00000476395 NUTM2GQ5VZR2 741 aa10.04□□□□□ -0.8
VAPB-205ENST00000476395 KAZALD1Q96I82 304 aa10.04□□□□□ -0.8
VAPB-205ENST00000476395 SPTLC3Q9NUV7 552 aa10.04□□□□□ -0.8
VAPB-205ENST00000476395 CAPN2P17655 700 aa10.03□□□□□ -0.8
VAPB-205ENST00000476395 ADCK5Q3MIX3 580 aa10.03□□□□□ -0.8
VAPB-205ENST00000476395 RHPN1Q8TCX5 695 aa10.03□□□□□ -0.8
VAPB-205ENST00000476395 PTH1RQ03431 593 aa10.03□□□□□ -0.8
VAPB-205ENST00000476395 TAF7Q15545 349 aaPredicted RBP10.03□□□□□ -0.8
VAPB-205ENST00000476395 ADAMTSL3P82987 1691 aa10.03□□□□□ -0.8
VAPB-205ENST00000476395 EPB41L2O43491 1005 aaKnown RBP10.03□□□□□ -0.8
VAPB-205ENST00000476395 MCM2P49736 904 aa10.03□□□□□ -0.8
VAPB-205ENST00000476395 AK2P54819 239 aa10.03□□□□□ -0.8
VAPB-205ENST00000476395 RTF1Q92541 710 aaKnown RBP10.03□□□□□ -0.8
VAPB-205ENST00000476395 BABAM1Q9NWV8 329 aa10.03□□□□□ -0.8
VAPB-205ENST00000476395 TBX22Q9Y458 520 aa10.03□□□□□ -0.8
VAPB-205ENST00000476395 MYH15Q9Y2K3 1946 aa10.03□□□□□ -0.8
VAPB-205ENST00000476395 TRPM3Q9HCF6 1732 aaPredicted RBP10.02□□□□□ -0.8
VAPB-205ENST00000476395 LRMPQ12912 555 aa10.02□□□□□ -0.81
VAPB-205ENST00000476395 NBPF6Q5VWK0 638 aa10.02□□□□□ -0.81
VAPB-205ENST00000476395 NBPF4Q96M43 638 aa10.02□□□□□ -0.81
VAPB-205ENST00000476395 C16orf45Q96MC5 204 aaPredicted RBP10.02□□□□□ -0.81
VAPB-205ENST00000476395 CNPY2Q9Y2B0 182 aa10.02□□□□□ -0.81
VAPB-205ENST00000476395 NPHP4O75161 1426 aaPredicted RBP10.02□□□□□ -0.81
VAPB-205ENST00000476395 LAMA4Q16363 1823 aa10.02□□□□□ -0.81
VAPB-205ENST00000476395 KIAA1524Q8TCG1 905 aa10.02□□□□□ -0.81
VAPB-205ENST00000476395 HYPKQ9NX55 129 aa10.02□□□□□ -0.81
VAPB-205ENST00000476395 CTNNA3Q9UI47 895 aa10.02□□□□□ -0.81
VAPB-205ENST00000476395 TAF6LQ9Y6J9 622 aa10.02□□□□□ -0.81
VAPB-205ENST00000476395 TRIM6-TRIM34B2RNG4 842 aa10.01□□□□□ -0.81
VAPB-205ENST00000476395 CHPF2Q9P2E5 772 aa10.01□□□□□ -0.81
VAPB-205ENST00000476395 PRAMEF22A3QJZ6 481 aa10.01□□□□□ -0.81
VAPB-205ENST00000476395 ANXA1P04083 346 aa10.01□□□□□ -0.81
VAPB-205ENST00000476395 PROSER3Q2NL68 480 aa10.01□□□□□ -0.81
VAPB-205ENST00000476395 GIMAP6Q6P9H5 292 aa10.01□□□□□ -0.81
VAPB-205ENST00000476395 AMPHP49418 695 aa10.01□□□□□ -0.81
VAPB-205ENST00000476395 MTX1Q13505 466 aa10.01□□□□□ -0.81
VAPB-205ENST00000476395 CHMP4CQ96CF2 233 aa10.01□□□□□ -0.81
VAPB-205ENST00000476395 STK31Q9BXU1 1019 aa10.01□□□□□ -0.81
VAPB-205ENST00000476395 COL15A1P39059 1388 aa10.01□□□□□ -0.81
VAPB-205ENST00000476395 KCNA6P17658 529 aa10□□□□□ -0.81
VAPB-205ENST00000476395 SYT1P21579 422 aa10□□□□□ -0.81
VAPB-205ENST00000476395 JCADQ9P266 1359 aa10□□□□□ -0.81
VAPB-205ENST00000476395 SLIT3O75094 1523 aa10□□□□□ -0.81
VAPB-205ENST00000476395 MBD3O95983 291 aa10□□□□□ -0.81
VAPB-205ENST00000476395 PTGS1P23219 599 aa10□□□□□ -0.81
VAPB-205ENST00000476395 RBM33Q96EV2 1170 aaKnown RBP10□□□□□ -0.81
VAPB-205ENST00000476395 SPG7Q9UQ90 795 aa10□□□□□ -0.81
VAPB-205ENST00000476395 CTIFO43310 598 aaKnown RBP10□□□□□ -0.81
VAPB-205ENST00000476395 UBTFL1P0CB47 393 aaPredicted RBP10□□□□□ -0.81
VAPB-205ENST00000476395 NLRP6P59044 892 aa10□□□□□ -0.81
VAPB-205ENST00000476395 SCN11AQ9UI33 1791 aa10□□□□□ -0.81
VAPB-205ENST00000476395 HDGFL1Q5TGJ6 251 aa9.99□□□□□ -0.81
VAPB-205ENST00000476395 SNRKQ9NRH2 765 aa9.99□□□□□ -0.81
VAPB-205ENST00000476395 OGFRQ9NZT2 677 aa9.99□□□□□ -0.81
VAPB-205ENST00000476395 PI4KAP2A4QPH2 592 aa9.99□□□□□ -0.81
VAPB-205ENST00000476395 CLGNO14967 610 aa9.99□□□□□ -0.81
VAPB-205ENST00000476395 NPHP1O15259 732 aa9.99□□□□□ -0.81
VAPB-205ENST00000476395 RAB11FIP3O75154 756 aa9.99□□□□□ -0.81
VAPB-205ENST00000476395 NECTIN1Q15223 517 aa9.99□□□□□ -0.81
VAPB-205ENST00000476395 PI4KAP1Q8N8J0 262 aa9.99□□□□□ -0.81
VAPB-205ENST00000476395 NRBP1Q9UHY1 535 aa9.99□□□□□ -0.81
VAPB-205ENST00000476395 SRGAP3O43295 1099 aa9.99□□□□□ -0.81
VAPB-205ENST00000476395 SURF6O75683 361 aaKnown RBP9.99□□□□□ -0.81
VAPB-205ENST00000476395 ZSCAN22P10073 491 aaPredicted RBP9.99□□□□□ -0.81
VAPB-205ENST00000476395 TRIM34Q9BYJ4 488 aa9.99□□□□□ -0.81
VAPB-205ENST00000476395 MTMR6Q9Y217 621 aa9.99□□□□□ -0.81
VAPB-205ENST00000476395 LMTK3Q96Q04 1460 aa9.99□□□□□ -0.81
VAPB-205ENST00000476395 KDM4AO75164 1064 aa9.98□□□□□ -0.81
VAPB-205ENST00000476395 PDIA6Q15084 440 aa9.98□□□□□ -0.81
VAPB-205ENST00000476395 TERF2Q15554 542 aa9.98□□□□□ -0.81
VAPB-205ENST00000476395 NGDNQ8NEJ9 315 aaKnown RBP9.98□□□□□ -0.81
VAPB-205ENST00000476395 CHMP3Q9Y3E7 222 aa9.98□□□□□ -0.81
VAPB-205ENST00000476395 SASH1O94885 1247 aa9.98□□□□□ -0.81
VAPB-205ENST00000476395 CWC27Q6UX04 472 aaKnown RBP9.98□□□□□ -0.81
VAPB-205ENST00000476395 DDX41Q9UJV9 622 aaKnown RBP9.98□□□□□ -0.81
VAPB-205ENST00000476395 PA2G4Q9UQ80 394 aaKnown RBP9.98□□□□□ -0.81
VAPB-205ENST00000476395 DDX60Q8IY21 1712 aaKnown RBP9.97□□□□□ -0.81
VAPB-205ENST00000476395 F13A1P00488 732 aa9.97□□□□□ -0.81
VAPB-205ENST00000476395 ME3Q16798 604 aa9.97□□□□□ -0.81
VAPB-205ENST00000476395 ZSWIM6Q9HCJ5 1215 aa9.97□□□□□ -0.81
VAPB-205ENST00000476395 TLR7Q9NYK1 1049 aaKnown RBP9.97□□□□□ -0.81
VAPB-205ENST00000476395 UTYO14607 1347 aa9.97□□□□□ -0.81
VAPB-205ENST00000476395 WDR33Q9C0J8 1336 aaKnown RBP9.97□□□□□ -0.81
VAPB-205ENST00000476395 LTV1Q96GA3 475 aaPredicted RBP9.97□□□□□ -0.81
VAPB-205ENST00000476395 FIBPO43427 364 aa9.96□□□□□ -0.81
VAPB-205ENST00000476395 STX6O43752 255 aa9.96□□□□□ -0.81
VAPB-205ENST00000476395 CHAF1AQ13111 956 aaPredicted RBP9.96□□□□□ -0.81
VAPB-205ENST00000476395 DNAAF4Q8WXU2 420 aa9.96□□□□□ -0.81
VAPB-205ENST00000476395 IP6K1Q92551 441 aa9.96□□□□□ -0.81
VAPB-205ENST00000476395 LRRC59Q96AG4 307 aaKnown RBP9.96□□□□□ -0.81
VAPB-205ENST00000476395 KIF1BPQ96EK5 621 aa9.96□□□□□ -0.81
VAPB-205ENST00000476395 IRX3P78415 501 aaPredicted RBP9.96□□□□□ -0.81
VAPB-205ENST00000476395 GRIPAP1Q4V328 841 aa9.96□□□□□ -0.81
VAPB-205ENST00000476395 KIF18AQ8NI77 898 aa9.96□□□□□ -0.81
VAPB-205ENST00000476395 TPCN1Q9ULQ1 816 aa9.96□□□□□ -0.81
VAPB-205ENST00000476395 ARFGEF2Q9Y6D5 1785 aa9.96□□□□□ -0.81
VAPB-205ENST00000476395 OVOS2A0A0G2JMS6 1433 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms