RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 A6NHS1 94 aa6.3□□□□□ -1.4
VPS13D-207ENST00000476169 OPLAHO14841 1288 aa6.3□□□□□ -1.4
VPS13D-207ENST00000476169 SORBS3O60504 671 aa6.3□□□□□ -1.4
VPS13D-207ENST00000476169 RHOQP17081 205 aa6.3□□□□□ -1.4
VPS13D-207ENST00000476169 ARSDP51689 593 aa6.3□□□□□ -1.4
VPS13D-207ENST00000476169 DAB2P98082 770 aa6.3□□□□□ -1.4
VPS13D-207ENST00000476169 TMC4Q7Z404 712 aa6.3□□□□□ -1.4
VPS13D-207ENST00000476169 SREK1Q8WXA9 508 aaKnown RBP6.3□□□□□ -1.4
VPS13D-207ENST00000476169 TIMMDC1Q9NPL8 285 aa6.3□□□□□ -1.4
VPS13D-207ENST00000476169 RNF19AQ9NV58 838 aa6.3□□□□□ -1.4
VPS13D-207ENST00000476169 DMGDHQ9UI17 866 aaKnown RBP6.3□□□□□ -1.4
VPS13D-207ENST00000476169 TTLL8A6PVC2 850 aa6.29□□□□□ -1.4
VPS13D-207ENST00000476169 EIF1AYO14602 144 aaKnown RBP6.29□□□□□ -1.4
VPS13D-207ENST00000476169 SCAMP3O14828 347 aaKnown RBP6.29□□□□□ -1.4
VPS13D-207ENST00000476169 MSX1P28360 303 aa6.29□□□□□ -1.4
VPS13D-207ENST00000476169 SCARF1Q14162 830 aa6.29□□□□□ -1.4
VPS13D-207ENST00000476169 LRRC69Q6ZNQ3 347 aa6.29□□□□□ -1.4
VPS13D-207ENST00000476169 BTLAQ7Z6A9 289 aa6.29□□□□□ -1.4
VPS13D-207ENST00000476169 FBF1Q8TES7 1133 aa6.29□□□□□ -1.4
VPS13D-207ENST00000476169 ZIC5Q96T25 663 aa6.29□□□□□ -1.4
VPS13D-207ENST00000476169 PDZRN3Q9UPQ7 1066 aa6.29□□□□□ -1.4
VPS13D-207ENST00000476169 FNDC3AQ9Y2H6 1198 aaKnown RBP6.29□□□□□ -1.4
VPS13D-207ENST00000476169 GJA3Q9Y6H8 435 aa6.29□□□□□ -1.4
VPS13D-207ENST00000476169 FAM187AA6NFU0 413 aa6.28□□□□□ -1.4
VPS13D-207ENST00000476169 PPM1GO15355 546 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-207ENST00000476169 GNA15P30679 374 aa6.28□□□□□ -1.4
VPS13D-207ENST00000476169 INPP5BP32019 993 aa6.28□□□□□ -1.4
VPS13D-207ENST00000476169 CMTR1Q8N1G2 835 aaKnown RBP6.28□□□□□ -1.4
VPS13D-207ENST00000476169 TMEM87AQ8NBN3 555 aa6.28□□□□□ -1.4
VPS13D-207ENST00000476169 DNAJC25Q9H1X3 360 aa6.28□□□□□ -1.4
VPS13D-207ENST00000476169 USP20Q9Y2K6 914 aa6.28□□□□□ -1.4
VPS13D-207ENST00000476169 RTCBQ9Y3I0 505 aaKnown RBP6.28□□□□□ -1.4
VPS13D-207ENST00000476169 A0A1W2PNR3 127 aa6.27□□□□□ -1.41
VPS13D-207ENST00000476169 FIGNL2A6NMB9 653 aa6.27□□□□□ -1.41
VPS13D-207ENST00000476169 UBAP1LF5GYI3 381 aa6.27□□□□□ -1.41
VPS13D-207ENST00000476169 CPNE3O75131 537 aaKnown RBP6.27□□□□□ -1.41
VPS13D-207ENST00000476169 BMP1P13497 986 aa6.27□□□□□ -1.41
VPS13D-207ENST00000476169 EPB42P16452 691 aa6.27□□□□□ -1.41
VPS13D-207ENST00000476169 ZNF438Q7Z4V0 828 aa6.27□□□□□ -1.41
VPS13D-207ENST00000476169 CFHR5Q9BXR6 569 aa6.27□□□□□ -1.41
VPS13D-207ENST00000476169 TNFRSF21O75509 655 aa6.26□□□□□ -1.41
VPS13D-207ENST00000476169 ERCC5P28715 1186 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-207ENST00000476169 ZC3H6P61129 1189 aaKnown RBP6.26□□□□□ -1.41
VPS13D-207ENST00000476169 HDLBPQ00341 1268 aaKnown RBP6.26□□□□□ -1.41
VPS13D-207ENST00000476169 TRIP4Q15650 581 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-207ENST00000476169 LDLRAD1Q5T700 205 aa6.26□□□□□ -1.41
VPS13D-207ENST00000476169 SNX29Q8TEQ0 813 aa6.26□□□□□ -1.41
VPS13D-207ENST00000476169 CEP63Q96MT8 703 aa6.26□□□□□ -1.41
VPS13D-207ENST00000476169 FRMD6Q96NE9 622 aa6.26□□□□□ -1.41
VPS13D-207ENST00000476169 C8orf37Q96NL8 207 aa6.26□□□□□ -1.41
VPS13D-207ENST00000476169 GPAMQ9HCL2 828 aa6.26□□□□□ -1.41
VPS13D-207ENST00000476169 FOXD3Q9UJU5 478 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-207ENST00000476169 SPG7Q9UQ90 795 aa6.26□□□□□ -1.41
VPS13D-207ENST00000476169 SOS2Q07890 1332 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-207ENST00000476169 SMARCA5O60264 1052 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-207ENST00000476169 TYRO3Q06418 890 aa6.25□□□□□ -1.41
VPS13D-207ENST00000476169 C9orf131Q5VYM1 1079 aa6.25□□□□□ -1.41
VPS13D-207ENST00000476169 PDE12Q6L8Q7 609 aaKnown RBP6.25□□□□□ -1.41
VPS13D-207ENST00000476169 XKR5Q6UX68 686 aa6.25□□□□□ -1.41
VPS13D-207ENST00000476169 PGBD3Q8N328 593 aa6.25□□□□□ -1.41
VPS13D-207ENST00000476169 RUBCNLQ9H714 662 aa6.25□□□□□ -1.41
VPS13D-207ENST00000476169 KCNMB2Q9Y691 235 aa6.25□□□□□ -1.41
VPS13D-207ENST00000476169 PHACTR2O75167 634 aa6.24□□□□□ -1.41
VPS13D-207ENST00000476169 AVPP01185 164 aa6.24□□□□□ -1.41
VPS13D-207ENST00000476169 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.24□□□□□ -1.41
VPS13D-207ENST00000476169 USPL1Q5W0Q7 1092 aa6.24□□□□□ -1.41
VPS13D-207ENST00000476169 TRIM46Q7Z4K8 759 aa6.24□□□□□ -1.41
VPS13D-207ENST00000476169 CRISPLD1Q9H336 500 aa6.24□□□□□ -1.41
VPS13D-207ENST00000476169 ELP3Q9H9T3 547 aa6.24□□□□□ -1.41
VPS13D-207ENST00000476169 METTL5Q9NRN9 209 aaKnown RBP6.24□□□□□ -1.41
VPS13D-207ENST00000476169 DYRK1BQ9Y463 629 aa6.24□□□□□ -1.41
VPS13D-207ENST00000476169 AK5Q9Y6K8 562 aa6.24□□□□□ -1.41
VPS13D-207ENST00000476169 XYLBO75191 536 aa6.23□□□□□ -1.41
VPS13D-207ENST00000476169 F11P03951 625 aa6.23□□□□□ -1.41
VPS13D-207ENST00000476169 EIF4BP23588 611 aaKnown RBP6.23□□□□□ -1.41
VPS13D-207ENST00000476169 CANXP27824 592 aaKnown RBP6.23□□□□□ -1.41
VPS13D-207ENST00000476169 SF3A1Q15459 793 aaKnown RBP6.23□□□□□ -1.41
VPS13D-207ENST00000476169 CTC1Q2NKJ3 1217 aa6.23□□□□□ -1.41
VPS13D-207ENST00000476169 NAALADL2Q58DX5 795 aa6.23□□□□□ -1.41
VPS13D-207ENST00000476169 UBXN4Q92575 508 aa6.23□□□□□ -1.41
VPS13D-207ENST00000476169 RNF34Q969K3 372 aa6.23□□□□□ -1.41
VPS13D-207ENST00000476169 CCDC74AQ96AQ1 378 aa6.23□□□□□ -1.41
VPS13D-207ENST00000476169 GAS2L1Q99501 681 aaPredicted RBP6.23□□□□□ -1.41
VPS13D-207ENST00000476169 ZFYVE28Q9HCC9 887 aa6.23□□□□□ -1.41
VPS13D-207ENST00000476169 NLRP2Q9NX02 1062 aa6.23□□□□□ -1.41
VPS13D-207ENST00000476169 TMEM63CQ9P1W3 806 aa6.23□□□□□ -1.41
VPS13D-207ENST00000476169 RGS20O76081 388 aa6.22□□□□□ -1.41
VPS13D-207ENST00000476169 GRNP28799 593 aaKnown RBP6.22□□□□□ -1.41
VPS13D-207ENST00000476169 IRS1P35568 1242 aa6.22□□□□□ -1.41
VPS13D-207ENST00000476169 ZNF76P36508 570 aa6.22□□□□□ -1.41
VPS13D-207ENST00000476169 FANCCQ00597 558 aa6.22□□□□□ -1.41
VPS13D-207ENST00000476169 EFHC2Q5JST6 749 aa6.22□□□□□ -1.41
VPS13D-207ENST00000476169 PI16Q6UXB8 463 aa6.22□□□□□ -1.41
VPS13D-207ENST00000476169 NLRP8Q86W28 1048 aa6.22□□□□□ -1.41
VPS13D-207ENST00000476169 NT5DC4Q86YG4 428 aa6.22□□□□□ -1.41
VPS13D-207ENST00000476169 EPS8L3Q8TE67 593 aaKnown RBP6.22□□□□□ -1.41
VPS13D-207ENST00000476169 CRELD1Q96HD1 420 aa6.22□□□□□ -1.41
VPS13D-207ENST00000476169 ZFP42Q96MM3 310 aa6.22□□□□□ -1.41
VPS13D-207ENST00000476169 BRD7Q9NPI1 651 aa6.22□□□□□ -1.41
VPS13D-207ENST00000476169 DNMT3LQ9UJW3 386 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms