RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 LMOD3Q0VAK6 560 aa16.1■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 SYNE4Q8N205 404 aa16.1■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 CRAMP1Q96RY5 1269 aa16.1■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 EIF2S2P20042 333 aaKnown RBP16.09■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 PARP10Q53GL7 1025 aa16.09■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 CC2D2BQ6DHV5 1058 aa16.09■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 C3orf67Q6ZVT6 689 aa16.09■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 RUNDC1Q96C34 613 aa16.09■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 ANXA1P04083 346 aa16.08■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 IARSP41252 1262 aaKnown RBP16.08■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 CHADLQ6NUI6 762 aa16.08■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 PPP1R42Q7Z4L9 355 aa16.08■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 TAF1DQ9H5J8 278 aaPredicted RBP16.08■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 ADAMTS8Q9UP79 889 aa16.08■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 ZNF541Q9H0D2 1346 aa16.08■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 COL4A5P29400 1685 aa16.08■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 ANKRD36CQ5JPF3 1778 aa16.08■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 GRIPAP1Q4V328 841 aa16.07■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 CCDC146Q8IYE0 955 aa16.07■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 DDX21Q9NR30 783 aaKnown RBP eCLIP16.07■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 ADAMTSL1Q8N6G6 1762 aa16.07■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 PASKQ96RG2 1323 aa16.06■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 IQCA1LA6NCM1 817 aa16.06■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 KRT24Q2M2I5 525 aa16.06■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 COPS6Q7L5N1 327 aa16.06■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 SLC51AQ86UW1 340 aa16.06■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 PRKRIP1Q9H875 184 aaPredicted RBP16.06■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 LAMB2P55268 1798 aa16.05■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 RNF123Q5XPI4 1314 aa16.05■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 ITGBL1O95965 494 aaPredicted RBP16.05■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 NEUROD2Q15784 382 aa16.05■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 NLRP10Q86W26 655 aa16.05■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 LDHDQ86WU2 507 aa16.05■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 RPGRQ92834 1020 aaKnown RBP16.05■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 RBM17Q96I25 401 aaKnown RBP16.05■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 UTP14AQ9BVJ6 771 aaKnown RBP16.05■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 HOXB7P09629 217 aa16.04■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 ZNF853P0CG23 659 aa16.04■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 TCIRG1Q13488 830 aa16.04■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 XAGE3Q8WTP9 111 aa16.04■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 NLRP3Q96P20 1036 aa16.04■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 CREBZFQ9NS37 354 aa16.04■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 HSP90AB3PQ58FF7 597 aa16.03■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 GPC2Q8N158 579 aa16.03■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 CFAP44Q96MT7 982 aa16.03■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 HACL1Q9UJ83 578 aa16.03■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 NECTIN2Q92692 538 aa16.02■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 RTFDC1Q9BY42 306 aaPredicted RBP16.02■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 VPS33BQ9H267 617 aa16.02■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 ATP6V0A2Q9Y487 856 aa16.02■□□□□ 0.16
MSH5-SAPCD1-205ENST00000476085 LTBP1Q14766 1721 aa16.02■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 PPEF1O14829 653 aaPredicted RBP16.01■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 EPHX2P34913 555 aa16.01■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 AIMP1Q12904 312 aaKnown RBP16.01■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 WDR43Q15061 677 aaKnown RBP eCLIP16.01■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 JDP2Q8WYK2 163 aa16.01■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 CHPF2Q9P2E5 772 aa16.01■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 TAF1P21675 1872 aa16.01■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 ABCC4O15439 1325 aa16■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 BBOX1O75936 387 aa16■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 ISCA1Q9BUE6 129 aa16■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 HCLS1P14317 486 aaPredicted RBP15.99■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 COL13A1Q5TAT6 717 aaPredicted RBP15.99■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 PNMA8AQ86V59 439 aaPredicted RBP15.99■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 SP8Q8IXZ3 490 aa15.99■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 PLBD2Q8NHP8 589 aa15.99■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 MBIPQ9NS73 344 aa15.99■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 DDX60Q8IY21 1712 aaKnown RBP15.99■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 SCNN1DP51172 638 aa15.98■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 TRIM28Q13263 835 aaKnown RBP15.98■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 HDGFL1Q5TGJ6 251 aa15.98■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 DUSP27Q5VZP5 1158 aa15.98■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 ANKRD13DQ6ZTN6 518 aa15.98■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 LARGE2Q8N3Y3 721 aa15.98■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 DBF4Q9UBU7 674 aaPredicted RBP15.98■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 LAS1LQ9Y4W2 734 aaKnown RBP15.98■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 SH3TC1Q8TE82 1336 aa15.97■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 EIF6P56537 245 aaKnown RBP15.97■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 TRMT112Q9UI30 125 aaKnown RBP15.97■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 APAF1O14727 1248 aa15.96■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 TCERG1O14776 1098 aaKnown RBP15.96■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 EAPPQ56P03 285 aaPredicted RBP15.96■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 CNTROBQ8N137 903 aa15.96■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 IFT57Q9NWB7 429 aa15.96■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 HYPKQ9NX55 129 aa15.96■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 CNTNAP1P78357 1384 aa15.96■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 LRRC37AA6NMS7 1700 aa15.96■□□□□ 0.15
MSH5-SAPCD1-205ENST00000476085 TMEM88BA6NKF7 163 aa15.95■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 HSPA1AP0DMV8 641 aaKnown RBP15.95■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 HSPA1BP0DMV9 641 aaKnown RBP15.95■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 EPS15P42566 896 aa15.95■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 GRAPQ13588 217 aa15.95■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 SF3B3Q15393 1217 aaKnown RBP15.95■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 AOC3Q16853 763 aa15.95■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 GRAPLQ8TC17 118 aaPredicted RBP15.95■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 PPIP5K2O43314 1243 aa15.94■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 CXCL9Q07325 125 aa15.94■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 KIAA2012Q0VF49 1180 aa15.94■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 MAP1SQ66K74 1059 aaPredicted RBP15.94■□□□□ 0.14
MSH5-SAPCD1-205ENST00000476085 DDX46Q7L014 1031 aaKnown RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms