RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 HCLS1P14317 486 aaPredicted RBP10.62□□□□□ -0.71
USP48-207ENST00000471752 KIF6Q6ZMV9 814 aa10.62□□□□□ -0.71
USP48-207ENST00000471752 RUNDC1Q96C34 613 aa10.62□□□□□ -0.71
USP48-207ENST00000471752 PDZRN3Q9UPQ7 1066 aa10.62□□□□□ -0.71
USP48-207ENST00000471752 COL4A5P29400 1685 aa10.62□□□□□ -0.71
USP48-207ENST00000471752 TNRC6CQ9HCJ0 1690 aaKnown RBP10.62□□□□□ -0.71
USP48-207ENST00000471752 LTBP3Q9NS15 1303 aa10.61□□□□□ -0.71
USP48-207ENST00000471752 SNED1Q8TER0 1413 aa10.61□□□□□ -0.71
USP48-207ENST00000471752 ELL2O00472 640 aaPredicted RBP10.61□□□□□ -0.71
USP48-207ENST00000471752 APAF1O14727 1248 aa10.61□□□□□ -0.71
USP48-207ENST00000471752 HOXA10P31260 410 aaPredicted RBP10.61□□□□□ -0.71
USP48-207ENST00000471752 FKBP4Q02790 459 aaKnown RBP eCLIP10.61□□□□□ -0.71
USP48-207ENST00000471752 FSTL1Q12841 308 aa10.61□□□□□ -0.71
USP48-207ENST00000471752 CCDC93Q567U6 631 aa10.61□□□□□ -0.71
USP48-207ENST00000471752 CHPF2Q9P2E5 772 aa10.61□□□□□ -0.71
USP48-207ENST00000471752 CCDC88AQ3V6T2 1871 aa10.61□□□□□ -0.71
USP48-207ENST00000471752 FER1L6Q2WGJ9 1857 aa10.6□□□□□ -0.71
USP48-207ENST00000471752 FMR1Q06787 632 aaKnown RBP eCLIP10.6□□□□□ -0.71
USP48-207ENST00000471752 NLRP10Q86W26 655 aa10.6□□□□□ -0.71
USP48-207ENST00000471752 SMC1BQ8NDV3 1235 aa10.6□□□□□ -0.71
USP48-207ENST00000471752 KLRG1Q96E93 195 aa10.6□□□□□ -0.71
USP48-207ENST00000471752 PNNQ9H307 717 aaKnown RBP10.6□□□□□ -0.71
USP48-207ENST00000471752 MBIPQ9NS73 344 aa10.6□□□□□ -0.71
USP48-207ENST00000471752 ZC3H4Q9UPT8 1303 aaKnown RBP10.59□□□□□ -0.71
USP48-207ENST00000471752 CACNA1SQ13698 1873 aa10.59□□□□□ -0.71
USP48-207ENST00000471752 ATP5J2-PTCD1G3V325 749 aa10.59□□□□□ -0.71
USP48-207ENST00000471752 RGL2O15211 777 aa10.59□□□□□ -0.71
USP48-207ENST00000471752 ZNF853P0CG23 659 aa10.59□□□□□ -0.71
USP48-207ENST00000471752 ALDH1B1P30837 517 aa10.59□□□□□ -0.71
USP48-207ENST00000471752 SLC10A5Q5PT55 438 aa10.59□□□□□ -0.71
USP48-207ENST00000471752 DPY19L2Q6NUT2 758 aa10.59□□□□□ -0.71
USP48-207ENST00000471752 C8orf58Q8NAV2 365 aa10.59□□□□□ -0.71
USP48-207ENST00000471752 JARID2Q92833 1246 aaPredicted RBP10.59□□□□□ -0.71
USP48-207ENST00000471752 FZD9O00144 591 aa10.58□□□□□ -0.72
USP48-207ENST00000471752 IARSP41252 1262 aaKnown RBP10.58□□□□□ -0.72
USP48-207ENST00000471752 TCIRG1Q13488 830 aa10.58□□□□□ -0.72
USP48-207ENST00000471752 WDR43Q15061 677 aaKnown RBP eCLIP10.58□□□□□ -0.72
USP48-207ENST00000471752 RTL5Q5HYW3 569 aaPredicted RBP10.58□□□□□ -0.72
USP48-207ENST00000471752 DUSP27Q5VZP5 1158 aa10.58□□□□□ -0.72
USP48-207ENST00000471752 UTP14AQ9BVJ6 771 aaKnown RBP10.58□□□□□ -0.72
USP48-207ENST00000471752 NYXQ9GZU5 481 aa10.58□□□□□ -0.72
USP48-207ENST00000471752 TAF1DQ9H5J8 278 aaPredicted RBP10.58□□□□□ -0.72
USP48-207ENST00000471752 PHAXQ9H814 394 aaKnown RBP10.58□□□□□ -0.72
USP48-207ENST00000471752 DDX21Q9NR30 783 aaKnown RBP eCLIP10.58□□□□□ -0.72
USP48-207ENST00000471752 BABAM1Q9NWV8 329 aa10.58□□□□□ -0.72
USP48-207ENST00000471752 NUP98P52948 1817 aa10.58□□□□□ -0.72
USP48-207ENST00000471752 COL13A1Q5TAT6 717 aaPredicted RBP10.57□□□□□ -0.72
USP48-207ENST00000471752 CHADLQ6NUI6 762 aa10.57□□□□□ -0.72
USP48-207ENST00000471752 RTKN2Q8IZC4 609 aa10.57□□□□□ -0.72
USP48-207ENST00000471752 TSPYL6Q8N831 410 aa10.57□□□□□ -0.72
USP48-207ENST00000471752 RPGRQ92834 1020 aaKnown RBP10.57□□□□□ -0.72
USP48-207ENST00000471752 FAM89AQ96GI7 184 aa10.57□□□□□ -0.72
USP48-207ENST00000471752 ABCC4O15439 1325 aa10.57□□□□□ -0.72
USP48-207ENST00000471752 ERBB4Q15303 1308 aa10.57□□□□□ -0.72
USP48-207ENST00000471752 RNF123Q5XPI4 1314 aa10.57□□□□□ -0.72
USP48-207ENST00000471752 COL4A1P02462 1669 aa10.57□□□□□ -0.72
USP48-207ENST00000471752 TIAM2Q8IVF5 1701 aa10.56□□□□□ -0.72
USP48-207ENST00000471752 PPEF1O14829 653 aaPredicted RBP10.56□□□□□ -0.72
USP48-207ENST00000471752 ITGBL1O95965 494 aaPredicted RBP10.56□□□□□ -0.72
USP48-207ENST00000471752 EPS15P42566 896 aa10.56□□□□□ -0.72
USP48-207ENST00000471752 EAPPQ56P03 285 aaPredicted RBP10.56□□□□□ -0.72
USP48-207ENST00000471752 SOGA3Q5TF21 947 aa10.56□□□□□ -0.72
USP48-207ENST00000471752 IFFO2Q5TF58 517 aa10.56□□□□□ -0.72
USP48-207ENST00000471752 HDGFL1Q5TGJ6 251 aa10.56□□□□□ -0.72
USP48-207ENST00000471752 JMYQ8N9B5 988 aa10.56□□□□□ -0.72
USP48-207ENST00000471752 RBM17Q96I25 401 aaKnown RBP10.56□□□□□ -0.72
USP48-207ENST00000471752 L3MBTL3Q96JM7 780 aaPredicted RBP10.56□□□□□ -0.72
USP48-207ENST00000471752 CFAP44Q96MT7 982 aa10.56□□□□□ -0.72
USP48-207ENST00000471752 CRAMP1Q96RY5 1269 aa10.56□□□□□ -0.72
USP48-207ENST00000471752 TRMT112Q9UI30 125 aaKnown RBP10.56□□□□□ -0.72
USP48-207ENST00000471752 GJA3Q9Y6H8 435 aa10.56□□□□□ -0.72
USP48-207ENST00000471752 WDR90Q96KV7 1748 aa10.55□□□□□ -0.72
USP48-207ENST00000471752 LAMB4A4D0S4 1761 aa10.55□□□□□ -0.72
USP48-207ENST00000471752 SHTN1A0MZ66 631 aa10.55□□□□□ -0.72
USP48-207ENST00000471752 LMOD3Q0VAK6 560 aa10.55□□□□□ -0.72
USP48-207ENST00000471752 PARP10Q53GL7 1025 aa10.55□□□□□ -0.72
USP48-207ENST00000471752 MAP1SQ66K74 1059 aaPredicted RBP10.55□□□□□ -0.72
USP48-207ENST00000471752 DLK2Q6UY11 383 aa10.55□□□□□ -0.72
USP48-207ENST00000471752 ANKRD13DQ6ZTN6 518 aa10.55□□□□□ -0.72
USP48-207ENST00000471752 PPP1R42Q7Z4L9 355 aa10.55□□□□□ -0.72
USP48-207ENST00000471752 NLRP3Q96P20 1036 aa10.55□□□□□ -0.72
USP48-207ENST00000471752 GPR101Q96P66 508 aaPredicted RBP10.55□□□□□ -0.72
USP48-207ENST00000471752 PSMD1Q99460 953 aa10.55□□□□□ -0.72
USP48-207ENST00000471752 ISCA1Q9BUE6 129 aa10.55□□□□□ -0.72
USP48-207ENST00000471752 KCNQ5Q9NR82 932 aa10.55□□□□□ -0.72
USP48-207ENST00000471752 MKRN1Q9UHC7 482 aaKnown RBP10.55□□□□□ -0.72
USP48-207ENST00000471752 WTIPA6NIX2 430 aaPredicted RBP10.54□□□□□ -0.72
USP48-207ENST00000471752 AOC3Q16853 763 aa10.54□□□□□ -0.72
USP48-207ENST00000471752 CELF1Q92879 486 aaKnown RBP10.54□□□□□ -0.72
USP48-207ENST00000471752 TSR2Q969E8 191 aaKnown RBP10.54□□□□□ -0.72
USP48-207ENST00000471752 ATP6V0A2Q9Y487 856 aa10.54□□□□□ -0.72
USP48-207ENST00000471752 PASKQ96RG2 1323 aa10.54□□□□□ -0.72
USP48-207ENST00000471752 EPHX2P34913 555 aa10.53□□□□□ -0.72
USP48-207ENST00000471752 SCNN1DP51172 638 aa10.53□□□□□ -0.72
USP48-207ENST00000471752 LARGE2Q8N3Y3 721 aa10.53□□□□□ -0.72
USP48-207ENST00000471752 PLBD2Q8NHP8 589 aa10.53□□□□□ -0.72
USP48-207ENST00000471752 HACL1Q9UJ83 578 aa10.53□□□□□ -0.72
USP48-207ENST00000471752 CLEC11AQ9Y240 323 aa10.53□□□□□ -0.72
USP48-207ENST00000471752 IBTKQ9P2D0 1353 aaPredicted RBP10.52□□□□□ -0.72
USP48-207ENST00000471752 DICER1Q9UPY3 1922 aaKnown RBP10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms