RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 OXCT2Q9BYC2 517 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-210ENST00000471439 GJA3Q9Y6H8 435 aa7.52□□□□□ -1.21
VPS13A-210ENST00000471439 PRDM2Q13029 1718 aa7.52□□□□□ -1.21
VPS13A-210ENST00000471439 EFSO43281 561 aa7.51□□□□□ -1.21
VPS13A-210ENST00000471439 FAM157BP0CG42 384 aa7.51□□□□□ -1.21
VPS13A-210ENST00000471439 BCRP11274 1271 aa7.51□□□□□ -1.21
VPS13A-210ENST00000471439 MAP3K10Q02779 954 aa7.51□□□□□ -1.21
VPS13A-210ENST00000471439 ALDH16A1Q8IZ83 802 aa7.51□□□□□ -1.21
VPS13A-210ENST00000471439 CCDC82Q8N4S0 544 aa7.51□□□□□ -1.21
VPS13A-210ENST00000471439 SHROOM2Q13796 1616 aa7.5□□□□□ -1.21
VPS13A-210ENST00000471439 ADCY10Q96PN6 1610 aa7.5□□□□□ -1.21
VPS13A-210ENST00000471439 MAP2K3P46734 347 aa7.5□□□□□ -1.21
VPS13A-210ENST00000471439 GGA1Q9UJY5 639 aa7.5□□□□□ -1.21
VPS13A-210ENST00000471439 RAD54L2Q9Y4B4 1467 aa7.49□□□□□ -1.21
VPS13A-210ENST00000471439 SFSWAPQ12872 951 aaKnown RBP7.49□□□□□ -1.21
VPS13A-210ENST00000471439 SAMD5Q5TGI4 173 aa7.49□□□□□ -1.21
VPS13A-210ENST00000471439 FAM200AQ8TCP9 573 aa7.49□□□□□ -1.21
VPS13A-210ENST00000471439 SUSD3Q96L08 255 aa7.49□□□□□ -1.21
VPS13A-210ENST00000471439 KLF15Q9UIH9 416 aa7.49□□□□□ -1.21
VPS13A-210ENST00000471439 CHMP3Q9Y3E7 222 aa7.49□□□□□ -1.21
VPS13A-210ENST00000471439 DNMBPQ6XZF7 1577 aa7.49□□□□□ -1.21
VPS13A-210ENST00000471439 NEURL1BA8MQ27 555 aa7.48□□□□□ -1.21
VPS13A-210ENST00000471439 OIP5O43482 229 aa7.48□□□□□ -1.21
VPS13A-210ENST00000471439 IGFBP4P22692 258 aa7.48□□□□□ -1.21
VPS13A-210ENST00000471439 ABCC8Q09428 1581 aa7.48□□□□□ -1.21
VPS13A-210ENST00000471439 RAB44Q7Z6P3 723 aaPredicted RBP7.48□□□□□ -1.21
VPS13A-210ENST00000471439 CCDC97Q96F63 343 aaPredicted RBP7.48□□□□□ -1.21
VPS13A-210ENST00000471439 PRIMPOLQ96LW4 560 aa7.48□□□□□ -1.21
VPS13A-210ENST00000471439 NSFL1CQ9UNZ2 370 aaKnown RBP7.48□□□□□ -1.21
VPS13A-210ENST00000471439 POLA1P09884 1462 aaPredicted RBP7.48□□□□□ -1.21
VPS13A-210ENST00000471439 CNTNAP5Q8WYK1 1306 aa7.48□□□□□ -1.21
VPS13A-210ENST00000471439 PRMT3O60678 531 aa7.47□□□□□ -1.21
VPS13A-210ENST00000471439 WEE1P30291 646 aa7.47□□□□□ -1.21
VPS13A-210ENST00000471439 PCBP4P57723 403 aaKnown RBP7.47□□□□□ -1.21
VPS13A-210ENST00000471439 SNRPNP63162 240 aaKnown RBP7.47□□□□□ -1.21
VPS13A-210ENST00000471439 TYRO3Q06418 890 aa7.47□□□□□ -1.21
VPS13A-210ENST00000471439 FKBP5Q13451 457 aaPredicted RBP7.47□□□□□ -1.21
VPS13A-210ENST00000471439 TMEM164Q5U3C3 297 aa7.47□□□□□ -1.21
VPS13A-210ENST00000471439 C1orf53Q5VUE5 145 aa7.47□□□□□ -1.21
VPS13A-210ENST00000471439 STAG2Q8N3U4 1231 aa7.47□□□□□ -1.21
VPS13A-210ENST00000471439 GALNT6Q8NCL4 622 aa7.47□□□□□ -1.21
VPS13A-210ENST00000471439 QTRT2Q9H974 415 aaKnown RBP7.47□□□□□ -1.21
VPS13A-210ENST00000471439 SLAIN2Q9P270 581 aa7.47□□□□□ -1.21
VPS13A-210ENST00000471439 BCS1LQ9Y276 419 aa7.47□□□□□ -1.21
VPS13A-210ENST00000471439 IQSEC2Q5JU85 1478 aa7.47□□□□□ -1.21
VPS13A-210ENST00000471439 SLCO4C1Q6ZQN7 724 aa7.46□□□□□ -1.22
VPS13A-210ENST00000471439 FCHSD1Q86WN1 690 aa7.46□□□□□ -1.22
VPS13A-210ENST00000471439 NEDD1Q8NHV4 660 aa7.46□□□□□ -1.22
VPS13A-210ENST00000471439 SLC30A3Q99726 388 aa7.46□□□□□ -1.22
VPS13A-210ENST00000471439 KLK14Q9P0G3 267 aa7.46□□□□□ -1.22
VPS13A-210ENST00000471439 MARK1Q9P0L2 795 aa7.46□□□□□ -1.22
VPS13A-210ENST00000471439 DNMT3AQ9Y6K1 912 aaPredicted RBP7.46□□□□□ -1.22
VPS13A-210ENST00000471439 STRCQ7RTU9 1775 aa7.46□□□□□ -1.22
VPS13A-210ENST00000471439 LTBP4Q8N2S1 1624 aa7.45□□□□□ -1.22
VPS13A-210ENST00000471439 GRIN2BQ13224 1484 aa7.45□□□□□ -1.22
VPS13A-210ENST00000471439 HSPA1LP34931 641 aa7.45□□□□□ -1.22
VPS13A-210ENST00000471439 IRS1P35568 1242 aa7.45□□□□□ -1.22
VPS13A-210ENST00000471439 MARSP56192 900 aaKnown RBP7.45□□□□□ -1.22
VPS13A-210ENST00000471439 KCNMA1Q12791 1236 aa7.45□□□□□ -1.22
VPS13A-210ENST00000471439 CAPN12Q6ZSI9 719 aa7.45□□□□□ -1.22
VPS13A-210ENST00000471439 EDARADDQ8WWZ3 215 aa7.45□□□□□ -1.22
VPS13A-210ENST00000471439 CEP63Q96MT8 703 aa7.45□□□□□ -1.22
VPS13A-210ENST00000471439 NEUROD4Q9HD90 331 aa7.45□□□□□ -1.22
VPS13A-210ENST00000471439 BRD7Q9NPI1 651 aa7.45□□□□□ -1.22
VPS13A-210ENST00000471439 GPC6Q9Y625 555 aaPredicted RBP7.45□□□□□ -1.22
VPS13A-210ENST00000471439 MADDQ8WXG6 1647 aa7.45□□□□□ -1.22
VPS13A-210ENST00000471439 UBAP1LF5GYI3 381 aa7.44□□□□□ -1.22
VPS13A-210ENST00000471439 ARAFP10398 606 aa7.44□□□□□ -1.22
VPS13A-210ENST00000471439 HOXB4P17483 251 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-210ENST00000471439 GRNP28799 593 aaKnown RBP7.44□□□□□ -1.22
VPS13A-210ENST00000471439 OCLNQ16625 522 aa7.44□□□□□ -1.22
VPS13A-210ENST00000471439 FAM182BQ5T319 152 aa7.44□□□□□ -1.22
VPS13A-210ENST00000471439 GOLGA6L1Q8N7Z2 621 aa7.44□□□□□ -1.22
VPS13A-210ENST00000471439 PBXIP1Q96AQ6 731 aa7.44□□□□□ -1.22
VPS13A-210ENST00000471439 RGS17Q9UGC6 210 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-210ENST00000471439 GDF2Q9UK05 429 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-210ENST00000471439 GLI2P10070 1586 aa7.44□□□□□ -1.22
VPS13A-210ENST00000471439 ACIN1Q9UKV3 1341 aaKnown RBP7.44□□□□□ -1.22
VPS13A-210ENST00000471439 WDR97A6NE52 1622 aa7.43□□□□□ -1.22
VPS13A-210ENST00000471439 ATG7O95352 703 aa7.43□□□□□ -1.22
VPS13A-210ENST00000471439 EPXP11678 715 aa7.43□□□□□ -1.22
VPS13A-210ENST00000471439 DGKZQ13574 1117 aa7.43□□□□□ -1.22
VPS13A-210ENST00000471439 ELOAQ14241 798 aaKnown RBP7.43□□□□□ -1.22
VPS13A-210ENST00000471439 RTN1Q16799 776 aa7.43□□□□□ -1.22
VPS13A-210ENST00000471439 MKNK1Q9BUB5 465 aa7.43□□□□□ -1.22
VPS13A-210ENST00000471439 SERPINA10Q9UK55 444 aa7.43□□□□□ -1.22
VPS13A-210ENST00000471439 FOXO3O43524 673 aa7.42□□□□□ -1.22
VPS13A-210ENST00000471439 RASSF7Q02833 373 aa7.42□□□□□ -1.22
VPS13A-210ENST00000471439 ZNF468Q5VIY5 522 aaPredicted RBP7.42□□□□□ -1.22
VPS13A-210ENST00000471439 BTLAQ7Z6A9 289 aa7.42□□□□□ -1.22
VPS13A-210ENST00000471439 SYT9Q86SS6 491 aa7.42□□□□□ -1.22
VPS13A-210ENST00000471439 ENAMQ9NRM1 1142 aa7.42□□□□□ -1.22
VPS13A-210ENST00000471439 LRFN2Q9ULH4 789 aa7.42□□□□□ -1.22
VPS13A-210ENST00000471439 PRG4Q92954 1404 aaPredicted RBP7.42□□□□□ -1.22
VPS13A-210ENST00000471439 SETD1AO15047 1707 aaKnown RBP7.41□□□□□ -1.22
VPS13A-210ENST00000471439 RNF225M0QZC1 329 aaPredicted RBP7.41□□□□□ -1.22
VPS13A-210ENST00000471439 ADH6P28332 368 aa7.41□□□□□ -1.22
VPS13A-210ENST00000471439 SPEM2Q0P670 501 aa7.41□□□□□ -1.22
VPS13A-210ENST00000471439 LAMC2Q13753 1193 aa7.41□□□□□ -1.22
VPS13A-210ENST00000471439 FAM26DQ5JW98 314 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 113.9 ms