RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 NEUROD2Q15784 382 aa22.89■■□□□ 1.25
COL7A1-208ENST00000470076 CHADLQ6NUI6 762 aa22.89■■□□□ 1.25
COL7A1-208ENST00000470076 SYNE4Q8N205 404 aa22.89■■□□□ 1.25
COL7A1-208ENST00000470076 PSMD1Q99460 953 aa22.89■■□□□ 1.25
COL7A1-208ENST00000470076 SNED1Q8TER0 1413 aa22.89■■□□□ 1.25
COL7A1-208ENST00000470076 PROSER3Q2NL68 480 aa22.88■■□□□ 1.25
COL7A1-208ENST00000470076 GRIPAP1Q4V328 841 aa22.88■■□□□ 1.25
COL7A1-208ENST00000470076 PCNTO95613 3336 aa22.88■■□□□ 1.25
COL7A1-208ENST00000470076 CHL1O00533 1208 aa22.87■■□□□ 1.25
COL7A1-208ENST00000470076 RBM17Q96I25 401 aaKnown RBP22.87■■□□□ 1.25
COL7A1-208ENST00000470076 CRAMP1Q96RY5 1269 aa22.87■■□□□ 1.25
COL7A1-208ENST00000470076 ANXA1P04083 346 aa22.86■■□□□ 1.25
COL7A1-208ENST00000470076 TRIM35Q9UPQ4 493 aa22.86■■□□□ 1.25
COL7A1-208ENST00000470076 ANKRD36CQ5JPF3 1778 aa22.86■■□□□ 1.25
COL7A1-208ENST00000470076 RNF123Q5XPI4 1314 aa22.85■■□□□ 1.25
COL7A1-208ENST00000470076 ZNF541Q9H0D2 1346 aa22.85■■□□□ 1.25
COL7A1-208ENST00000470076 FZD9O00144 591 aa22.85■■□□□ 1.25
COL7A1-208ENST00000470076 HSP90AB3PQ58FF7 597 aa22.85■■□□□ 1.25
COL7A1-208ENST00000470076 COPS6Q7L5N1 327 aa22.85■■□□□ 1.25
COL7A1-208ENST00000470076 JDP2Q8WYK2 163 aa22.85■■□□□ 1.25
COL7A1-208ENST00000470076 NLRP3Q96P20 1036 aa22.85■■□□□ 1.25
COL7A1-208ENST00000470076 UTP14AQ9BVJ6 771 aaKnown RBP22.85■■□□□ 1.25
COL7A1-208ENST00000470076 TAF1DQ9H5J8 278 aaPredicted RBP22.85■■□□□ 1.25
COL7A1-208ENST00000470076 POTEIP0CG38 1075 aa22.84■■□□□ 1.25
COL7A1-208ENST00000470076 POTEJP0CG39 1038 aa22.84■■□□□ 1.25
COL7A1-208ENST00000470076 SLC10A5Q5PT55 438 aa22.84■■□□□ 1.25
COL7A1-208ENST00000470076 LDHDQ86WU2 507 aa22.84■■□□□ 1.25
COL7A1-208ENST00000470076 NECTIN2Q92692 538 aa22.84■■□□□ 1.25
COL7A1-208ENST00000470076 DDX21Q9NR30 783 aaKnown RBP eCLIP22.84■■□□□ 1.25
COL7A1-208ENST00000470076 ADAMTS8Q9UP79 889 aa22.84■■□□□ 1.25
COL7A1-208ENST00000470076 XAGE3Q8WTP9 111 aa22.83■■□□□ 1.25
COL7A1-208ENST00000470076 HACL1Q9UJ83 578 aa22.83■■□□□ 1.25
COL7A1-208ENST00000470076 LAS1LQ9Y4W2 734 aaKnown RBP22.83■■□□□ 1.25
COL7A1-208ENST00000470076 PPEF1O14829 653 aaPredicted RBP22.82■■□□□ 1.24
COL7A1-208ENST00000470076 AIMP1Q12904 312 aaKnown RBP22.82■■□□□ 1.24
COL7A1-208ENST00000470076 C3orf67Q6ZVT6 689 aa22.82■■□□□ 1.24
COL7A1-208ENST00000470076 PRKRIP1Q9H875 184 aaPredicted RBP22.82■■□□□ 1.24
COL7A1-208ENST00000470076 HOXB7P09629 217 aa22.81■■□□□ 1.24
COL7A1-208ENST00000470076 KRT24Q2M2I5 525 aa22.81■■□□□ 1.24
COL7A1-208ENST00000470076 GPC2Q8N158 579 aa22.81■■□□□ 1.24
COL7A1-208ENST00000470076 TMX4Q9H1E5 349 aaPredicted RBP22.81■■□□□ 1.24
COL7A1-208ENST00000470076 TCIRG1Q13488 830 aa22.8■■□□□ 1.24
COL7A1-208ENST00000470076 NLRP10Q86W26 655 aa22.8■■□□□ 1.24
COL7A1-208ENST00000470076 CREBZFQ9NS37 354 aa22.8■■□□□ 1.24
COL7A1-208ENST00000470076 EPHX2P34913 555 aa22.79■■□□□ 1.24
COL7A1-208ENST00000470076 EIF6P56537 245 aaKnown RBP22.79■■□□□ 1.24
COL7A1-208ENST00000470076 HDGFL1Q5TGJ6 251 aa22.79■■□□□ 1.24
COL7A1-208ENST00000470076 CFAP44Q96MT7 982 aa22.79■■□□□ 1.24
COL7A1-208ENST00000470076 TCERG1O14776 1098 aaKnown RBP22.78■■□□□ 1.24
COL7A1-208ENST00000470076 EAPPQ56P03 285 aaPredicted RBP22.78■■□□□ 1.24
COL7A1-208ENST00000470076 PNMA8AQ86V59 439 aaPredicted RBP22.78■■□□□ 1.24
COL7A1-208ENST00000470076 LARGE2Q8N3Y3 721 aa22.78■■□□□ 1.24
COL7A1-208ENST00000470076 CHPF2Q9P2E5 772 aa22.78■■□□□ 1.24
COL7A1-208ENST00000470076 ATP6V0A2Q9Y487 856 aa22.78■■□□□ 1.24
COL7A1-208ENST00000470076 LAMB2P55268 1798 aa22.77■■□□□ 1.24
COL7A1-208ENST00000470076 DBF4Q9UBU7 674 aaPredicted RBP22.77■■□□□ 1.24
COL7A1-208ENST00000470076 TRMT112Q9UI30 125 aaKnown RBP22.77■■□□□ 1.24
COL7A1-208ENST00000470076 COL4A5P29400 1685 aa22.77■■□□□ 1.24
COL7A1-208ENST00000470076 ABCC4O15439 1325 aa22.77■■□□□ 1.24
COL7A1-208ENST00000470076 PASKQ96RG2 1323 aa22.77■■□□□ 1.24
COL7A1-208ENST00000470076 ADAMTSL1Q8N6G6 1762 aa22.76■■□□□ 1.23
COL7A1-208ENST00000470076 VPS33BQ9H267 617 aa22.76■■□□□ 1.23
COL7A1-208ENST00000470076 SH3TC1Q8TE82 1336 aa22.76■■□□□ 1.23
COL7A1-208ENST00000470076 BBOX1O75936 387 aa22.75■■□□□ 1.23
COL7A1-208ENST00000470076 PLBD2Q8NHP8 589 aa22.75■■□□□ 1.23
COL7A1-208ENST00000470076 CLEC11AQ9Y240 323 aa22.75■■□□□ 1.23
COL7A1-208ENST00000470076 ITGBL1O95965 494 aaPredicted RBP22.74■■□□□ 1.23
COL7A1-208ENST00000470076 HCLS1P14317 486 aaPredicted RBP22.74■■□□□ 1.23
COL7A1-208ENST00000470076 ANKRD13DQ6ZTN6 518 aa22.74■■□□□ 1.23
COL7A1-208ENST00000470076 SLC51AQ86UW1 340 aa22.74■■□□□ 1.23
COL7A1-208ENST00000470076 GJA3Q9Y6H8 435 aa22.74■■□□□ 1.23
COL7A1-208ENST00000470076 DUSP27Q5VZP5 1158 aa22.73■■□□□ 1.23
COL7A1-208ENST00000470076 DDX46Q7L014 1031 aaKnown RBP22.73■■□□□ 1.23
COL7A1-208ENST00000470076 NIM1KQ8IY84 436 aa22.73■■□□□ 1.23
COL7A1-208ENST00000470076 SUPT20HQ8NEM7 779 aa22.73■■□□□ 1.23
COL7A1-208ENST00000470076 MBIPQ9NS73 344 aa22.73■■□□□ 1.23
COL7A1-208ENST00000470076 HYPKQ9NX55 129 aa22.73■■□□□ 1.23
COL7A1-208ENST00000470076 PPIP5K2O43314 1243 aa22.72■■□□□ 1.23
COL7A1-208ENST00000470076 LMOD1P29536 600 aaPredicted RBP22.72■■□□□ 1.23
COL7A1-208ENST00000470076 CALD1Q05682 793 aaKnown RBP22.72■■□□□ 1.23
COL7A1-208ENST00000470076 SP8Q8IXZ3 490 aa22.72■■□□□ 1.23
COL7A1-208ENST00000470076 RTFDC1Q9BY42 306 aaPredicted RBP22.72■■□□□ 1.23
COL7A1-208ENST00000470076 APAF1O14727 1248 aa22.71■■□□□ 1.23
COL7A1-208ENST00000470076 ZNF853P0CG23 659 aa22.71■■□□□ 1.23
COL7A1-208ENST00000470076 HSPA1AP0DMV8 641 aaKnown RBP22.71■■□□□ 1.23
COL7A1-208ENST00000470076 HSPA1BP0DMV9 641 aaKnown RBP22.71■■□□□ 1.23
COL7A1-208ENST00000470076 MKRN1Q9UHC7 482 aaKnown RBP22.71■■□□□ 1.23
COL7A1-208ENST00000470076 TMEM88BA6NKF7 163 aa22.7■■□□□ 1.22
COL7A1-208ENST00000470076 GRAPQ13588 217 aa22.7■■□□□ 1.22
COL7A1-208ENST00000470076 AOC3Q16853 763 aa22.7■■□□□ 1.22
COL7A1-208ENST00000470076 DPP8Q6V1X1 898 aaPredicted RBP22.7■■□□□ 1.22
COL7A1-208ENST00000470076 GRAPLQ8TC17 118 aaPredicted RBP22.7■■□□□ 1.22
COL7A1-208ENST00000470076 ISCA1Q9BUE6 129 aa22.7■■□□□ 1.22
COL7A1-208ENST00000470076 IFT57Q9NWB7 429 aa22.7■■□□□ 1.22
COL7A1-208ENST00000470076 CNTNAP1P78357 1384 aa22.69■■□□□ 1.22
COL7A1-208ENST00000470076 SCNN1DP51172 638 aa22.69■■□□□ 1.22
COL7A1-208ENST00000470076 GNAI1P63096 354 aa22.69■■□□□ 1.22
COL7A1-208ENST00000470076 COL13A1Q5TAT6 717 aaPredicted RBP22.69■■□□□ 1.22
COL7A1-208ENST00000470076 TMC4Q7Z404 712 aa22.69■■□□□ 1.22
COL7A1-208ENST00000470076 CNTROBQ8N137 903 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms