RNA–Protein interactions for RNA: ENST00000470045.1

COMMD3-208, Transcript of COMM domain containing 3, humanhuman

TSL 2

Gene COMMD3, Length 662 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-208ENST00000470045 DBF4Q9UBU7 674 aaPredicted RBP18.28■□□□□ 0.52
COMMD3-208ENST00000470045 LTBP3Q9NS15 1303 aa18.27■□□□□ 0.52
COMMD3-208ENST00000470045 C21orf2O43822 256 aa18.27■□□□□ 0.52
COMMD3-208ENST00000470045 LMNB1P20700 586 aa18.27■□□□□ 0.52
COMMD3-208ENST00000470045 NUTM1Q86Y26 1132 aa18.27■□□□□ 0.52
COMMD3-208ENST00000470045 GTF2E1P29083 439 aaPredicted RBP18.26■□□□□ 0.51
COMMD3-208ENST00000470045 ERFEQ4G0M1 354 aa18.26■□□□□ 0.51
COMMD3-208ENST00000470045 WWC1Q8IX03 1113 aa18.26■□□□□ 0.51
COMMD3-208ENST00000470045 C7orf43Q8WVR3 580 aa18.26■□□□□ 0.51
COMMD3-208ENST00000470045 RNF123Q5XPI4 1314 aa18.25■□□□□ 0.51
COMMD3-208ENST00000470045 KIF3CO14782 793 aa18.25■□□□□ 0.51
COMMD3-208ENST00000470045 AIMP1Q12904 312 aaKnown RBP18.25■□□□□ 0.51
COMMD3-208ENST00000470045 HSP90AB3PQ58FF7 597 aa18.25■□□□□ 0.51
COMMD3-208ENST00000470045 PPP1R42Q7Z4L9 355 aa18.25■□□□□ 0.51
COMMD3-208ENST00000470045 IL16Q14005 1332 aa18.24■□□□□ 0.51
COMMD3-208ENST00000470045 SNED1Q8TER0 1413 aa18.24■□□□□ 0.51
COMMD3-208ENST00000470045 DDX60Q8IY21 1712 aaKnown RBP18.24■□□□□ 0.51
COMMD3-208ENST00000470045 SOGA3Q5TF21 947 aa18.24■□□□□ 0.51
COMMD3-208ENST00000470045 PLBD2Q8NHP8 589 aa18.24■□□□□ 0.51
COMMD3-208ENST00000470045 HYPKQ9NX55 129 aa18.24■□□□□ 0.51
COMMD3-208ENST00000470045 TCIRG1Q13488 830 aa18.23■□□□□ 0.51
COMMD3-208ENST00000470045 NLRP10Q86W26 655 aa18.23■□□□□ 0.51
COMMD3-208ENST00000470045 C8orf58Q8NAV2 365 aa18.23■□□□□ 0.51
COMMD3-208ENST00000470045 HOXA10P31260 410 aaPredicted RBP18.22■□□□□ 0.51
COMMD3-208ENST00000470045 SLC10A5Q5PT55 438 aa18.22■□□□□ 0.51
COMMD3-208ENST00000470045 UTP14AQ9BVJ6 771 aaKnown RBP18.22■□□□□ 0.51
COMMD3-208ENST00000470045 ZNF219Q9P2Y4 722 aaPredicted RBP18.22■□□□□ 0.51
COMMD3-208ENST00000470045 ALDH1B1P30837 517 aa18.21■□□□□ 0.51
COMMD3-208ENST00000470045 CCDC93Q567U6 631 aa18.21■□□□□ 0.51
COMMD3-208ENST00000470045 ANKRD13DQ6ZTN6 518 aa18.21■□□□□ 0.51
COMMD3-208ENST00000470045 TSR2Q969E8 191 aaKnown RBP18.21■□□□□ 0.51
COMMD3-208ENST00000470045 TAOK3Q9H2K8 898 aa18.21■□□□□ 0.51
COMMD3-208ENST00000470045 NMRK2Q9NPI5 230 aa18.21■□□□□ 0.51
COMMD3-208ENST00000470045 KDM2BQ8NHM5 1336 aa18.21■□□□□ 0.51
COMMD3-208ENST00000470045 SENP3-EIF4A1A0A087X0R7 540 aa18.2■□□□□ 0.5
COMMD3-208ENST00000470045 ELL2O00472 640 aaPredicted RBP18.2■□□□□ 0.5
COMMD3-208ENST00000470045 TSPYL6Q8N831 410 aa18.2■□□□□ 0.5
COMMD3-208ENST00000470045 ISCA1Q9BUE6 129 aa18.2■□□□□ 0.5
COMMD3-208ENST00000470045 C3orf67Q6ZVT6 689 aa18.19■□□□□ 0.5
COMMD3-208ENST00000470045 WDR90Q96KV7 1748 aa18.19■□□□□ 0.5
COMMD3-208ENST00000470045 CACNA1FO60840 1977 aa18.19■□□□□ 0.5
COMMD3-208ENST00000470045 RPGRQ92834 1020 aaKnown RBP18.18■□□□□ 0.5
COMMD3-208ENST00000470045 CRAMP1Q96RY5 1269 aa18.18■□□□□ 0.5
COMMD3-208ENST00000470045 CHMP4AQ9BY43 222 aa18.18■□□□□ 0.5
COMMD3-208ENST00000470045 PHAXQ9H814 394 aaKnown RBP18.18■□□□□ 0.5
COMMD3-208ENST00000470045 GLTPD2A6NH11 291 aa18.17■□□□□ 0.5
COMMD3-208ENST00000470045 FKBP4Q02790 459 aaKnown RBP eCLIP18.17■□□□□ 0.5
COMMD3-208ENST00000470045 TRIM28Q13263 835 aaKnown RBP18.17■□□□□ 0.5
COMMD3-208ENST00000470045 CCDC30Q5VVM6 783 aa18.17■□□□□ 0.5
COMMD3-208ENST00000470045 OLFM4Q6UX06 510 aa18.17■□□□□ 0.5
COMMD3-208ENST00000470045 WDR63Q8IWG1 891 aa18.17■□□□□ 0.5
COMMD3-208ENST00000470045 NLRP3Q96P20 1036 aa18.17■□□□□ 0.5
COMMD3-208ENST00000470045 SH3TC1Q8TE82 1336 aa18.17■□□□□ 0.5
COMMD3-208ENST00000470045 LRRC37AA6NMS7 1700 aa18.16■□□□□ 0.5
COMMD3-208ENST00000470045 RTKN2Q8IZC4 609 aa18.16■□□□□ 0.5
COMMD3-208ENST00000470045 TRMT112Q9UI30 125 aaKnown RBP18.16■□□□□ 0.5
COMMD3-208ENST00000470045 FANCIQ9NVI1 1328 aa18.16■□□□□ 0.5
COMMD3-208ENST00000470045 NPM3O75607 178 aaKnown RBP18.15■□□□□ 0.5
COMMD3-208ENST00000470045 TOMM70O94826 608 aa18.15■□□□□ 0.5
COMMD3-208ENST00000470045 GOLGA2Q08379 1002 aa18.15■□□□□ 0.5
COMMD3-208ENST00000470045 CC2D2BQ6DHV5 1058 aa18.15■□□□□ 0.5
COMMD3-208ENST00000470045 FAM9BQ8IZU0 186 aa18.15■□□□□ 0.5
COMMD3-208ENST00000470045 SYNE4Q8N205 404 aa18.15■□□□□ 0.5
COMMD3-208ENST00000470045 RBM17Q96I25 401 aaKnown RBP18.15■□□□□ 0.5
COMMD3-208ENST00000470045 TAF1P21675 1872 aa18.15■□□□□ 0.5
COMMD3-208ENST00000470045 TWISTNBQ3B726 338 aaPredicted RBP18.14■□□□□ 0.49
COMMD3-208ENST00000470045 ATP5J2-PTCD1G3V325 749 aa18.13■□□□□ 0.49
COMMD3-208ENST00000470045 HCLS1P14317 486 aaPredicted RBP18.13■□□□□ 0.49
COMMD3-208ENST00000470045 RIC3Q7Z5B4 369 aa18.13■□□□□ 0.49
COMMD3-208ENST00000470045 PSMD1Q99460 953 aa18.13■□□□□ 0.49
COMMD3-208ENST00000470045 ABCC4O15439 1325 aa18.13■□□□□ 0.49
COMMD3-208ENST00000470045 PPEF1O14829 653 aaPredicted RBP18.12■□□□□ 0.49
COMMD3-208ENST00000470045 GRIPAP1Q4V328 841 aa18.12■□□□□ 0.49
COMMD3-208ENST00000470045 RRAGCQ9HB90 399 aa18.12■□□□□ 0.49
COMMD3-208ENST00000470045 COL4A5P29400 1685 aa18.12■□□□□ 0.49
COMMD3-208ENST00000470045 SLC51AQ86UW1 340 aa18.11■□□□□ 0.49
COMMD3-208ENST00000470045 RBM46Q8TBY0 533 aaKnown RBP18.11■□□□□ 0.49
COMMD3-208ENST00000470045 ZNF277Q9NRM2 450 aaPredicted RBP18.11■□□□□ 0.49
COMMD3-208ENST00000470045 SALL2Q9Y467 1007 aaPredicted RBP18.11■□□□□ 0.49
COMMD3-208ENST00000470045 ZNF521Q96K83 1311 aa18.11■□□□□ 0.49
COMMD3-208ENST00000470045 SCN4AP35499 1836 aa18.1■□□□□ 0.49
COMMD3-208ENST00000470045 COL4A1P02462 1669 aa18.1■□□□□ 0.49
COMMD3-208ENST00000470045 DDX58O95786 925 aaKnown RBP18.1■□□□□ 0.49
COMMD3-208ENST00000470045 DPY19L2Q6NUT2 758 aa18.1■□□□□ 0.49
COMMD3-208ENST00000470045 FAM89AQ96GI7 184 aa18.1■□□□□ 0.49
COMMD3-208ENST00000470045 METTL22Q9BUU2 404 aaPredicted RBP18.1■□□□□ 0.49
COMMD3-208ENST00000470045 STK31Q9BXU1 1019 aa18.1■□□□□ 0.49
COMMD3-208ENST00000470045 POTECB2RU33 542 aa18.09■□□□□ 0.49
COMMD3-208ENST00000470045 VEGFAP15692 232 aaPredicted RBP18.09■□□□□ 0.49
COMMD3-208ENST00000470045 HSPA6P17066 643 aa18.09■□□□□ 0.49
COMMD3-208ENST00000470045 IARSP41252 1262 aaKnown RBP18.09■□□□□ 0.49
COMMD3-208ENST00000470045 SF3B3Q15393 1217 aaKnown RBP18.09■□□□□ 0.49
COMMD3-208ENST00000470045 CCDC191Q8NCU4 936 aa18.09■□□□□ 0.49
COMMD3-208ENST00000470045 MYD88Q99836 296 aa18.09■□□□□ 0.49
COMMD3-208ENST00000470045 ATP6V0A2Q9Y487 856 aa18.09■□□□□ 0.49
COMMD3-208ENST00000470045 DUOX1Q9NRD9 1551 aa18.08■□□□□ 0.49
COMMD3-208ENST00000470045 MYH3P11055 1940 aa18.08■□□□□ 0.49
COMMD3-208ENST00000470045 BBOX1O75936 387 aa18.08■□□□□ 0.48
COMMD3-208ENST00000470045 GRAPQ13588 217 aa18.08■□□□□ 0.48
COMMD3-208ENST00000470045 KSR2Q6VAB6 950 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms